KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:41 2014 Check: 00 .. Name: ENSP00000270139/1-557 Len: 563 Check: 7473 Weight: 1.00 Name: ENSBTAP00000029080/1-560 Len: 563 Check: 5973 Weight: 1.00 Name: ENSTTRP00000014292/1-536 Len: 563 Check: 3838 Weight: 1.00 Name: bmy_01209T0/1-547 Len: 563 Check: 7318 Weight: 1.00 Name: BACU010398/1-523 Len: 563 Check: 1311 Weight: 1.00 // 1 50 ENSP00000270139/1-557 MMVVLLGATT LVLVAVAPWV LSAAAGGKNL KSPQKVEVDI IDDNFILRWN ENSBTAP00000029080/1-560 -MLALLGATT LMLVAG-RWV LPAASGEANL K-PENVEIHI IDDNFFLKWN ENSTTRP00000014292/1-536 ---------- ---------- ------GTNL KSPENGRVCI IDDNFILQWN bmy_01209T0/1-547 -MLALLGATT LMLVAGAPWV LPAASGGTNL KSPENGRVCI IDDNFILEWN BACU010398/1-523 -MLALLGATT LMLVAGAPWV LPAASGGTNL KSPENGRVCI IDDNFILKWN 51 100 ENSP00000270139/1-557 RSDESVGNVT FSFDYQKTGM DNWIKLSGCQ NITSTKCNFS SLKL-NVYEE ENSBTAP00000029080/1-560 SSSESVKNVT FSADYQILGT DNWKKLSGCQ HITSTKCNFS SVELENVFEK ENSTTRP00000014292/1-536 SSRESVRNVT FSAEYKIPGM DNWKKLPGCQ HITSTECNFS SVKLKNVYEK bmy_01209T0/1-547 SNSESVRNVT FSAEYKIPGM DNWKKLPGCQ HITSTECNFS SVKLKNVYEK BACU010398/1-523 SN-------- ---------- ---------- ---------- -IKLKNVYEK 101 150 ENSP00000270139/1-557 IKLRIRAEKE NTSS-WYEVD SFTPFRKAQI GPPEVHLEAE DKAIVIHIS- ENSBTAP00000029080/1-560 IELRIRAEEG NNTSTWYEVE PFVPFLEAQI GPPDVHLEAE DKAIILSISP ENSTTRP00000014292/1-536 IELRIRAEKG NSTSQWHEVK PFIPFQEAQI GPLDVHLEAE DKAIIINVSP bmy_01209T0/1-547 IELRIRAEKG NNTSQWHEVK PFIPFQK--- ---DVHLEAE DKAIIINISP BACU010398/1-523 IELRIRAEKG NNTSQWHEVK PFIPFQKAQI GPLDVHLEAE DKAIIINISP 151 200 ENSP00000270139/1-557 PGTKDSVMWA LDGLSFTYSL VIWKNSSGVE ERIENIYSRH KIYKLSPETT ENSBTAP00000029080/1-560 PGTKDSIMWA MDRSSFRYSV VIWKNSSSLE ERTETVYPED KIYKLSPEIT ENSTTRP00000014292/1-536 PGTKDSIMWA MDHSSFIYSL VIWKNSSRLE ERTETVYSRD KIYNLSPETT bmy_01209T0/1-547 PGTKDSIMWA MDHSSFIYSL VIWKNSSSLE ERTETVYSRD KIYKLSPETT BACU010398/1-523 PGTKDSIMWA MDHSSFMYSL VIWKNSSRLE ERTETVYSRD KIYKLSPETT 201 250 ENSP00000270139/1-557 YCLKVKAALL TSWKIGVYSP VHCIKTTVEN ELPPPENIEV SVQNQNYVLK ENSBTAP00000029080/1-560 YCLKVKAELR LQSRVGCYSP VYCINTTERH KVPSPENIQI NADNQIYVLK ENSTTRP00000014292/1-536 YCLKVKAELR SPRRVGFYSP VYCINTTEKH KVPSPENIRI DAKNQVYVLQ bmy_01209T0/1-547 YCLKVKAELR SPRRVGFYSP VYCINTTEKH KVPAPENIQI DAENQVYVLK BACU010398/1-523 YCLKVKAELR SPRRVGLYSP VYCINTTEKH KVPAPENIQI DAENQVYVLK 251 300 ENSP00000270139/1-557 WDYTYANMTF QVQWLHAFLK RNPGNHLYKW KQIPDCENVK TTQCVFPQNV ENSBTAP00000029080/1-560 WDYPYENATF QAQWLRAFFK KIPGNHSDKW KQIPNCENVT STHCVFPREV ENSTTRP00000014292/1-536 WDYARENTTF RAQWSHEFLK RIPGSHSDKW KQIPNCEDVK TTRCVIPQNA bmy_01209T0/1-547 WDYAYENTTF RAQWSH---- -----HSDKW KQIPNCEDVK TTYCVIPQNV BACU010398/1-523 WDYAYENTTF RAQWSHEFLK RIPGSHSDKW KQIPNCEDVK TTHCVIPQNV 301 350 ENSP00000270139/1-557 FQKGIYLLRV QASDGNNTSF WSEEIKFDTE IQAFLLPPVF NIRSLS-DSF ENSBTAP00000029080/1-560 SSRGIYYVRV RASNGNGTSF WSEEKEFNTE MKTIIFPPVI SVKSVTDDSL ENSTTRP00000014292/1-536 FPEGIHRIRV QASNGNSTSF WSEEKIFNTE MKTVIFPPVI SMKSVNDDSL bmy_01209T0/1-547 FPEGIHRIRV QASNGNNTSF WSEEKIFNTQ MKTIIFPPVI SMKSVNDDSL BACU010398/1-523 FPEGIHRIRV QASNGNNTSF WSEEKIFNTE MKTIIFPPVI SMKSINDDSL 351 400 ENSP00000270139/1-557 HIYIGAPKQS GNTPVIQDYP LIYEIIFWEN TSNAERKIIE KKTDVTVPNL ENSBTAP00000029080/1-560 HVSVGASEES ENMSVNQLYP LIYEVIFWEN TSNAERKVLE KRTNFIFPDL ENSTTRP00000014292/1-536 HVSIGAPKES ENKSVNQPYP LIYEVIFWEN TSNAERKVVE KRTDVTFPNL bmy_01209T0/1-547 HVSIGAPKES ENKSVNQLYP LIYEVIFREN TSNAERKVVE KRTDFTFPNL BACU010398/1-523 HVSIGAPKES ENKSVNQLYP LIYEVIFREN TSNAERKVVE KRTDFTFPNL 401 450 ENSP00000270139/1-557 KPLTVYCVKA RAHTMDEKLN KSSVFSDAVC EKTKPGNTSK IWLIVGICIA ENSBTAP00000029080/1-560 KPLTVYCVKA RALIENDRRN KGSSFSDTVC EKTKPGNTSK TWLIVGTCTA ENSTTRP00000014292/1-536 KPLTVYCVKA RAFTENGKWN KSSVFSATVC EKTKPGNTSK TWLIAGICTA bmy_01209T0/1-547 KPLTVYCVKA RALTENDKWN KSSVFSDTVC EKTKPGNTSK TWLIAGICTA BACU010398/1-523 KPLTVYCVKA RALTENDKWN KSSVFSDTVC EKTKPGNTSK TWLIAGICTS 451 500 ENSP00000270139/1-557 LFALPFVIYA AKVFLRCINY VFFPSLKPSS SIDEYFSEQP LKNLLLSTSE ENSBTAP00000029080/1-560 LFSIPVVIYV VSVFLRCVKY VFFPSSKPPS SVDEYFSDQP LRNLLLSTSE ENSTTRP00000014292/1-536 LFSIIVIIYV VKVLLRCINY VFFPSSKPPS TVDEYFSEWP VRNLLLSTSE bmy_01209T0/1-547 LFSIIVVIYV VKVLLRCINY VFFPSSKPPS TVDEYFSEQP VRNLLLSTSE BACU010398/1-523 LFSIIVAIYV VKVLLRCINY VFFPSSKPPS TVDEYFSEPP VRNLLLSTSE 501 550 ENSP00000270139/1-557 EQIEKCFIIE NISTIATVEE TNQTDEDHKK YSSQTSQDSG NYSNEDE-SE ENSBTAP00000029080/1-560 EQTERCFIIE NASIITEIEE TDEIDEVHKK YSSQTSQDSG NYSNEDENSG ENSTTRP00000014292/1-536 EQTERCSIIE NANTITVIEE TNPI-EDHKK YNSQTSQDSG NYSNEDENSE bmy_01209T0/1-547 ERTERCSIIE NANTFTVIEE TNTIDEDHKK YNSQTSQDSG NYSNEDENSG BACU010398/1-523 ERTERCSIIE NANTLTVIEE TNPIDEDHKK YNSQTSQDSG NYSNEDENSG 551 600 ENSP00000270139/1-557 SKTSEEL-QQ DFV ENSBTAP00000029080/1-560 SKISEEFPQQ DSV ENSTTRP00000014292/1-536 SKISEELLEQ ETV bmy_01209T0/1-547 SKISEELLQQ ETV BACU010398/1-523 SKISEELLQQ ETV