KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:42 2014 Check: 00 .. Name: ENSP00000338785/1-1113 Len: 1146 Check: 7985 Weight: 1.00 Name: ENSBTAP00000029081/1-1123 Len: 1146 Check: 2035 Weight: 1.00 Name: ENSTTRP00000011803/1-1113 Len: 1146 Check: 7809 Weight: 1.00 Name: bmy_14965T0/1-686 Len: 1146 Check: 6092 Weight: 1.00 Name: BACU015753/1-1126 Len: 1146 Check: 1276 Weight: 1.00 // 1 50 ENSP00000338785/1-1113 MFSQVPRTPA SGCYYLNSMT PEGQEMYLRF DQTTRRSPYR MSRILARHQL ENSBTAP00000029081/1-1123 MLSQGPRTPA SGCYYLNAMT PEGQEMYLRF DQTTRRSPYR MSRILARHQL ENSTTRP00000011803/1-1113 MFSQGPRTPA SGCYYLNAMT PEGQEMYLRF DQTARRSPYR MSRILARHQL bmy_14965T0/1-686 ---------- ---------- ---------- ---------- ---------- BACU015753/1-1126 MFSQGPRNPA SGCYYLNAMT PEGQEMYLRF DQTARRSPYR MSRILARHQL 51 100 ENSP00000338785/1-1113 VTKIQQEIEA KEACDWLRAA GFPQYAQLYE DSQFPINIVA VKNDHDFLEK ENSBTAP00000029081/1-1123 VTKIQQEIEA KEACDWLRAA GFPQYAQLYE DSQFPINIVA VKNDHDFLEK ENSTTRP00000011803/1-1113 VTKIQQEIEA KEACDWLRAA GFPQYAQLYE DSQFPINIVA VKNDHDFLEK bmy_14965T0/1-686 ---------- ---------- ---------- ---------- ---------- BACU015753/1-1126 VTKIQQEIEA KEACDWLRAA GFPQYAQLYE DSQFPINIVA VKNDHDFLEK 101 150 ENSP00000338785/1-1113 DLVEPLCRRL NTLNKCASMK LDVNFQRKKG DDSDEEDLCI SNKWTFQRTS ENSBTAP00000029081/1-1123 DLVEPLYRRL NTLNKCASMK LDVNFQRKKG DDSDEEDLCI SNKWTFQRTS ENSTTRP00000011803/1-1113 DLVEPLYRRL NTLNKCASMK LDVNFQRKKG DDSDEEDLCI SNKWTFQRTS bmy_14965T0/1-686 ---------- ---------- ---------- ---------- ---------- BACU015753/1-1126 DLVEPLYRRL NTLNKCASMK LDVNFQRKKG DDSDEEDLCI SNKWTFQRTS 151 200 ENSP00000338785/1-1113 RRWSRVDDLY TLLPRGDRNG SPGGTGMRNT TSSESVLTDL SEPEVCSIHS ENSBTAP00000029081/1-1123 RRWSRVDDLH TLFPGGDRNG SSGDIRMKNT TSSESVLTDL SEPEVCSIHS ENSTTRP00000011803/1-1113 RRWSRVDDLH AVFPGGDRNG SSGDITMRNT TSSESVLTDL SEPEVCSIHS bmy_14965T0/1-686 ---------- ---------- ---------- ---------- ---------- BACU015753/1-1126 RRWSRVDDLH ALFPGGDRNG SAGDIRMRNT TSSESVLTDL SEPEVCSIHS 201 250 ENSP00000338785/1-1113 ESSGGSDSRS Q--------- ----PGQCCT DNPVMLDAPL VSSSLPQPPR ENSBTAP00000029081/1-1123 ESSGGSDGRS QPGGHGVGRE AFEGPGQYCA DGPVMLDAAL VGNSLLPSSK ENSTTRP00000011803/1-1113 ESSGGSDGRS Q--------- ----PGQYCA HGPAMLDATL GGSSLPPSPR bmy_14965T0/1-686 ---------- ---------- ---------- ---------- ---------- BACU015753/1-1126 ESSGGSDGRS QPGSYGAGRE ALDGPGQYCA HGPAMLDATL GGSSLPPSPK 251 300 ENSP00000338785/1-1113 DVLNHPFHPK NEKPTRARAK SFLKRMETLR GKGAHGRHKG SGRTGGLVIS ENSBTAP00000029081/1-1123 DGLQHPLHPK NEKPSRARAK SFLKRMETLR GKGAQGRHK- -GRPGGLVIS ENSTTRP00000011803/1-1113 DGLQHPLHPK NEKPSRARAK SFLKRMETLR GKGAQGRQKG SGRTGGLVIS bmy_14965T0/1-686 ---------- ---------- ---------- ---------- ---------- BACU015753/1-1126 DGLQHPLHPK NEKPTRARAK SFLKRMETLR GKGAQGRQKG SGRTGGLVIS 301 350 ENSP00000338785/1-1113 GPMLQQEPES FKAMQCIQIP NGDLQNSPPP ACRKGLPCSG KSSGESSPSE ENSBTAP00000029081/1-1123 GPVLQQEPES FRAMQCVQIP NGHLQNSPPA TGSAGLPGAT KWGAESSPSE ENSTTRP00000011803/1-1113 GPVLQQEPES FKAMQCIQIP NGDLQNSPPA ACKTGLPGPS KWSGESSPSE bmy_14965T0/1-686 ---------- ---------- ---------- ---------- ---------- BACU015753/1-1126 GPVLQQEPES FKAMQCIQIP NGDLQNSPPA ACKTGLPGPS KWSGESSPSE 351 400 ENSP00000338785/1-1113 HSSSGVSTPC LKERKCHEAN KRGGMYLEDL DVLAGTALPD AGD-QSRMHE ENSBTAP00000029081/1-1123 NSSSGGSTPG LKERKCQEAH KRGGMYLEDL DVLAGTALQD AGDRKHHAHE ENSTTRP00000011803/1-1113 NSSSGVSTPG LKERRCQEAH KRGGMYLEDL DVLAGTALRG AGD-QNHARE bmy_14965T0/1-686 ---------- ---------- ---------- ---------- ---------- BACU015753/1-1126 NSSSGVSTPG LKERRCQEAH KRGGMYLEDL DVLAGTALRD AGD-QNHARE 401 450 ENSP00000338785/1-1113 FHSQENLVVH IPKDHKPGTF PKALSIESLS PTDSSNGVNW RTGSISLGRE ENSBTAP00000029081/1-1123 FHSQENLVVH VPKDHKPGTF PKALSIESLS PTDNSHGASW RTGSISLGRQ ENSTTRP00000011803/1-1113 FHSQENLVVH IPKDHKPGTF PKALSIESLS PTDNSSGVNW RTGNVSPGRR bmy_14965T0/1-686 ---------- ---------- ---------- ---------- ---------- BACU015753/1-1126 FHSQENLVVH IPKDHKPGTF PKALSIESLS PTDNSSGVHW RTGSISLGRQ 451 500 ENSP00000338785/1-1113 QVPGAREPRL MASCHRASRV SIYDNVPGSH LYASTGDLLD LEKDDLFPHL ENSBTAP00000029081/1-1123 PGPGAREPRL VGSCHRASRV SIYDNVPGSH LYASTGDLLD LEKDDLFPHL ENSTTRP00000011803/1-1113 PGPGAGEPRL MASCHRASRV SIYDNVPGSH LYASTGDLLD LEKDDLFPHL bmy_14965T0/1-686 ---------- MASCHRASRV SVYDNVPGSH LYASTGDLLD LEKDDLFPHL BACU015753/1-1126 PGPGAGEPRL MASCHRASRV SVYDNVPGSH LYASTGDLLD LEKDDLFPHL 501 550 ENSP00000338785/1-1113 DDILQHVNGL QEVVDDWSKD VLPELQTHDT LVGEPGLSTF PSPNQITLDF ENSBTAP00000029081/1-1123 DDILHHVNGL QEVVDDWSRN VLPEPQTHSS --GEAGFSPF PSPNQITLDF ENSTTRP00000011803/1-1113 DDILHHVNGL QEVVDDWSKN LLPELQAHNA LSGEAGFCPF PPPSQITLDF bmy_14965T0/1-686 DDILHHVNGL QEVVDDWSKN LLPELQTHNA LAGEAGFCPF PPPSQITLDF BACU015753/1-1126 DDILHHVNGL QEVVDDWSKN LLPELQTHNA LAGEAGFCPF PPHSQITLDF 551 600 ENSP00000338785/1-1113 EGNSVSEGRT TPSDVERDVT SLNESEPPGV RDRRDSGVGA SLTRPNRRLR ENSBTAP00000029081/1-1123 EGNSVSEGRT TPSDMERDGA SLTESEATGV RERRDSGVGA SLTRPNRRLR ENSTTRP00000011803/1-1113 EGNSVSEGRT TPSDVERDGA SLNESEAAGV RERRDSGVGA SLTRPNRRLR bmy_14965T0/1-686 EGNSVSEGRT TPSDVERDGA SLNESEAAGV RERRDSGVGA SLTRPNRRLR BACU015753/1-1126 EGNSVSEGRT TPSDVERDGA SLNESEAAGV RERRDSGVGA SLTRPNRRLR 601 650 ENSP00000338785/1-1113 WNSFQLSHQP RPAPASPHIS SQTASQLSLL QRFSLLRLTA IMEKHSMSNK ENSBTAP00000029081/1-1123 WNSFQLSHQP QPSTASPHIS GQTAGQLNLL QRFSLLRLTA IMEKHSMSNK ENSTTRP00000011803/1-1113 WNSFQLSHQP QPSTASPHIS GQTAGQLNLL QRFSLLRLTA IMEKHSMSNK bmy_14965T0/1-686 WNSFQLSHQP QPSTASPHIS GQTAGQLNLL QRFSLLRLTA IMEKHSMSNK BACU015753/1-1126 WNSFQLSHQP QPSTASPHIS GQTAGQLNLL QRFSLLRLTA IMEKHSMSNK 651 700 ENSP00000338785/1-1113 HGWT------ ---------- ---WSVPKFM KRMKVPDYKD KAVFGVPLIV ENSBTAP00000029081/1-1123 HGWT------ ---------- ---WAVPKFM KRMKVPDYRD KAVFGVPLIV ENSTTRP00000011803/1-1113 HGWT------ ---------- ---WAVPKFM KRMKVPDYRD KTVFGIPLIV bmy_14965T0/1-686 HGWTCLSPQC APRGVHDLLS VNSRAVPKFM KRMKVPDYRD KTVFGIPLIV BACU015753/1-1126 HGWT------ ---------- ---WAVPKFM KRMKVPDYRD KTVFGIPLIV 701 750 ENSP00000338785/1-1113 HVQRTGQPLP QSIQQALRYL RSNCLDQVGL FRKSGVKSRI HALRQMNENF ENSBTAP00000029081/1-1123 HVQRTGQPLP QSIQQALRYL RSNCLDQVGL FRKSGVKSRI HALRQMNENF ENSTTRP00000011803/1-1113 HVQRTGQPLP QSIQQALRYL RSNCLDQVGL FRKSGVKSRI HALRQMNESF bmy_14965T0/1-686 HVQRTGQPLP QSIQQALRYL RSNCLDQVGL FRKSGVKSRI HALRQMNESF BACU015753/1-1126 HVQRTGQPLP QSIQQALRYL RSNCLDQVGL FRKSGVKSRI HALRQMNESF 751 800 ENSP00000338785/1-1113 PENVNYEDQS AYDVADMVKQ FFRDLPEPLF TNKLSETFLH IYQYVSKEQR ENSBTAP00000029081/1-1123 PENVSYEDQS AYDVADMVKQ FFRDLPEPLF TNKLSETFLH IYQYVPKEQR ENSTTRP00000011803/1-1113 PENVSYDDQS AYDVADMVKQ FFRDLPEPLF TNKLSETFLH IYQYVPKEQQ bmy_14965T0/1-686 PENVSYEDQS AYDVADMVKQ FFRDLPEPLF TNKLNETFLH IYQYVPKEQQ BACU015753/1-1126 PENVSYEDQS AYDVADMVKQ FFRDLPEPLF TNKLNETFLH IYQYVPKEQQ 801 850 ENSP00000338785/1-1113 LQAVQAAILL LADENREVLQ TLLCFLNDVV NLVEENQMTP MNLAVCLAPS ENSBTAP00000029081/1-1123 LQAVQAAVLL LADESREVLQ TLLCFLNDVV HAVEENQMTP MNLAVCLAPS ENSTTRP00000011803/1-1113 LQAVQAAILL LADESREVLQ TLLCFLNDVV HAVEENQMTP MNLAVCLAPS bmy_14965T0/1-686 LQAVQAAVLL LADESREVLQ TLLCFLNDVV HAVEENQMTP MNLAVCLAPS BACU015753/1-1126 LQAVQAAVLL LADESREVLQ TLLCFLNDVV HAVEENQMTP MNLAVCLAPS 851 900 ENSP00000338785/1-1113 LFHLNLLKKE SSPRVIQKKY ATGKPDQKDL NENLAAAQGL AHMIMECDRL ENSBTAP00000029081/1-1123 LFHLNLLKKE SSPRVIQKKY AAGKPDQKDL SENLAAAQGL AHMIMECDRL ENSTTRP00000011803/1-1113 LFHLNLLKKE SSPRVIQKKY ASGKPDQKDL SENLAAAQGL AHMIMECDRL bmy_14965T0/1-686 LFHLNLLKKE SSPRVSQKKY ASGKPDQKDL SENLAAAQGL AHMIMECDRL BACU015753/1-1126 LFHLNLLKKE SSPRVSQKKY ASGKPDQKDL SENLAAAQGL AHMIMECDRL 901 950 ENSP00000338785/1-1113 FEVPHELVAQ SRNSYVEAEI HVPTLEELGT QLEESGATFH TYLNHLIQGL ENSBTAP00000029081/1-1123 FEVPLEMVAQ SHNSYVEAEI HPPTLEELGA QLEDSGATFH TYLEHLVQGL ENSTTRP00000011803/1-1113 FEVPLEMVAQ SHNSYMEAEI HPPTLEDLGA QLEESGATFH TYLEHLIQGL bmy_14965T0/1-686 FEVPLEMVAQ SHNSYMEAXM HPPTLEDLGA QMEESGATFH TYLEHLIQGL BACU015753/1-1126 FEVPLEMVAQ SHNSYMEAEM HPPTLEDLGA QMEESGATFH TYLEHLIQGL 951 1000 ENSP00000338785/1-1113 QKEAKEKFKG WVTCSSTDNT DLAFKKVGDG NPLKLWKASV EVEAPPSVVL ENSBTAP00000029081/1-1123 QKEAKEKFKG WVTCPSTDST ELAFKKVGDG PPLRLWKASA EVEAPPSVVL ENSTTRP00000011803/1-1113 QKEAKEKFKG WVTCSNTDNT DLAFKKVGDG HPLKLWKASV EVEAPPSVVL bmy_14965T0/1-686 QKEAKEKFKG WVTCSNTDNT DLAFKKVGDE HPLRLWKASV EVEAPPSVVL BACU015753/1-1126 QKEAKEKFKG WVTCSNTDNT DLAFKKVGDG HPLRLWKASV EVEAPPSVVL 1001 1050 ENSP00000338785/1-1113 NRVLRERHLW DEDFVQWKVV ETLDRQTEIY QYVLNSMAPH PSRDFVVLRT ENSBTAP00000029081/1-1123 NRVLRERHLW DEDFVQWKVV ETLDKQTEVY QYVLNSMAPH PSRDFVVLRT ENSTTRP00000011803/1-1113 NRVLRERHLW DEDFVQWKVV ETLDKQTEIY QYVQNSMAPH PSRDFLVLRT bmy_14965T0/1-686 NRVLRERHLW DEDFVQWKVV ETLDKQTEIY QYVQNSMAPH PSRDFLVLRT BACU015753/1-1126 NRVLRERHLW DEDFVQWKVV ETLDKQTEIY QYVQNSMAPH PSRDFLVLRT 1051 1100 ENSP00000338785/1-1113 WKTDLPKGMC TLVSLSVEHE EAQLLGGVRA VVMDSQYLIE PCGSGKSRLT ENSBTAP00000029081/1-1123 WKTDLPKGMC TLVSLSVEHE EAQLMGGVRA AVMDSQYLIE PCGSGKSRLT ENSTTRP00000011803/1-1113 WKTDLPKGMC TLVSLSVDHE EAQLMGGVRA VVMDSQYLME PCGSGKSRLT bmy_14965T0/1-686 WKTDLPKGMC TLVSLSVEHE EAQLMGGVRA VVMDSQYLME PCGSGKSRLT BACU015753/1-1126 WKTDLPKGMC TLVSLSVEHE EAQLMGGVRA VVMDSQYLME PCGSGKSRLT 1101 1150 ENSP00000338785/1-1113 HICRIDLKGH SPEWYSKGFG HLCAAEVARI RNSFQPLIAE GPETKI ENSBTAP00000029081/1-1123 HICRVDLRGH SPEWYNKGFG HLCAAEVARI RNSFQPLIAE GPETKI ENSTTRP00000011803/1-1113 HICRVDLRGH SPEWYNKGFG HLCAAEVARI RNSFQPLIAE GPETKI bmy_14965T0/1-686 HICRVDLRGH SPEWYNKGFG HLCAAEVARI RNSFQPLIAE GPETKI BACU015753/1-1126 HICRVDLRGH SPEWYNKGFG HLCAAEVARI RNSFQPLIAE GPETKI