KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:43 2014 Check: 00 .. Name: ENSBTAP00000029082/1-1013 Len: 1125 Check: 5730 Weight: 1.00 Name: ENSP00000363727/1-1103 Len: 1125 Check: 654 Weight: 1.00 Name: ENSTTRP00000005603/1-1091 Len: 1125 Check: 9552 Weight: 1.00 Name: bmy_21630T0/1-1100 Len: 1125 Check: 7107 Weight: 1.00 Name: BACU010278/1-1104 Len: 1125 Check: 3825 Weight: 1.00 // 1 50 ENSBTAP00000029082/1-1013 ---------- ---------- ---------- ---------- ---------- ENSP00000363727/1-1103 MPLLDVFWSC FR--KVKCFP LLQVKKN--- -----AEAEA KRACEWLQAT ENSTTRP00000005603/1-1091 MPLLDVFWAC FR--KVKCFP LLQGRKN--- -----AEAEA KNACRWLRAT bmy_21630T0/1-1100 MARRTSFVAS VQL-QVSTES GRGAPPCARH SQS--REAEA KKACRWLRAT BACU010278/1-1104 MAQAQGWGQA LRLPKLRTWT PRGVKDTRWD PPSWKPEAEA KKACRWLRAT 51 100 ENSBTAP00000029082/1-1013 ---------- ---------- ---------- ---------- MTLNSCASMK ENSP00000363727/1-1103 GFPQYVQLFE EGSFPLDIGS VKKNHGFLDE DSLGALCRRL MTLNNCASMK ENSTTRP00000005603/1-1091 GFPQYAQLFE EGSFPVDIGS VKKDHGFLDE DSLGALCRRL MTLNSCASMK bmy_21630T0/1-1100 GFPQYAQLFE EGSFPVDIGS VKKDHGFLDE DSLGALCRRL MTLNSCASMK BACU010278/1-1104 GFPQYAQLFE EGSFPVDIGS VKKDHGFLDE DSLGALCRRL MTLNSCASMK 101 150 ENSBTAP00000029082/1-1013 LEVHFQCKQN EDSEEEEHCT ISNHWTFERE NKQWSRMGSS DLLAPASPDL ENSP00000363727/1-1103 LEVHFQSKQN EDSEEEEQCT ISSHWAFQQE SKCWSPMGSS DLLAPPSPGL ENSTTRP00000005603/1-1091 LEVHFQCKQN EDSEEEEHCT INNHWAFQRE SKRWSHVGSS DLLAPPSPGL bmy_21630T0/1-1100 LEVHFQCKQN EDSEEEEHCT ISNHWAFQRE SKRWSHVGSS DLLAPPSPGL BACU010278/1-1104 LEVHFQCKQN EDSEEEEHCT ISNHWAFQRE SKRWSHVGSS DLLAPPSPGL 151 200 ENSBTAP00000029082/1-1013 PVTSSCEGVL TELSATSLPA ITVSLPPEPA DLPLLGHSSS PSHWPFFSPT ENSP00000363727/1-1103 PATSSCESVL TELSATSLPV ITVSLPPEPA DLPLPGRAPS SSDRPLLSPT ENSTTRP00000005603/1-1091 PVTSSCESVL TELSATSLPA ITVSLPPEPV GLPLLGCAPS PSGRPFHSPT bmy_21630T0/1-1100 PVTSSCESVL TELSATSLPA ITVSLPPEPV DLPLLGCAPS PSGRRFLSPT BACU010278/1-1104 PVTSSCESVL TELSAISLPA ITVSLPPGPV DLPLLGCAPS PSGRPFLSPT 201 250 ENSBTAP00000029082/1-1013 RGQEGPRDKT KK-HRSQSFL KHLESLRRKE KGGGRQADLE HSSVTSEKVA ENSP00000363727/1-1103 QGQEGPQDKA KKRHRNRSFL KHLESLRRKE KSGSQQAEPK HSPATSEKVS ENSTTRP00000005603/1-1091 QDQETPQGKA KK-HRSRSFL KHLESLRRKE KGGSRQAEPE RSSATSEKAT bmy_21630T0/1-1100 QDQETPQDKA KK-HRSRSFL KHLESLRRKE KGGSRQAEPE RSSATSEKAT BACU010278/1-1104 QNRETPQDKA KK-HRSRSFL KHLESLRRKE KGGSRQAEPE RSSATSEKAT 251 300 ENSBTAP00000029082/1-1013 KAFSFRSRHG FL----YRAK NQAATSASGS GAETQRAWEA WPVAMFQHPP ENSP00000363727/1-1103 KASSFRSCRG FLSAGFYRAK NWAATSAGGS GANTRKAWEA WPVASFRHPQ ENSTTRP00000005603/1-1091 KAASFRSRRG FL----YRAK NRAATSASGS GTETQRAWEA WPVATFQRPQ bmy_21630T0/1-1100 KAASFRSRRG FL----YRAK NRAATSASGG GTETQRAWEA WPVATFQHPR BACU010278/1-1104 KAASFRSRRG FL----YRAK NRAATSASGG GTETQRAWEA WPVATFQHPR 301 350 ENSBTAP00000029082/1-1013 RAHQGDCLVH VPRDHKPGTF PRSLSIESLC PEDGHRLADW QPGRHWGHEG ENSP00000363727/1-1103 WTHRGDCLVH VPGDHKPGTF PRSLSIESLC PEDGHRLADW QPGRRWGCEG ENSTTRP00000005603/1-1091 RAHWGDCLVH VPRDHKPGTF PRSLSIESLC PEDGHHLADR QPGSCWGYEG bmy_21630T0/1-1100 RAHWGDCLVH VPRDHKPGTF PRSLSIESLC PEDGHHLADR QPGSCWGYEG BACU010278/1-1104 RAHWGDCLVH VPRDHKPGTF PRSLSIESLC PEDGHHLADR QPGSCWGYEG 351 400 ENSBTAP00000029082/1-1013 RRGSCGSIGS HTSIYDNMPE LYPAEPVLAG AEAEEE-EEE GGDSYTHLDD ENSP00000363727/1-1103 RRGSCGSTGS HASTYDNLPE LYPAEPVMVG AEAEDEDDEE SGGSYAHLDD ENSTTRP00000005603/1-1091 RRGSCGSTGS HASTYDNMPE LYPAEPVLAG AEAEEE--EE GGDSHTHLDD bmy_21630T0/1-1100 RRGSCGSTGS HASTYDNMPE LYPAEPVLAG AEAEEE--EA GGDSYTHLDD BACU010278/1-1104 RRGSCGSAGS HASTYDNMPE LYPAEPVLAG AEAEEQ--EE RGDSYTHLDD 401 450 ENSBTAP00000029082/1-1013 ILQHVWGLQQ RVELWSQAMC PDLGPGDKEE EEEEEVEEEA TSTVEIATDG ENSP00000363727/1-1103 ILQHVWGLQQ RVELWSRAMY PDLGPGD--- EE----EEEA TSSVEIATVE ENSTTRP00000005603/1-1091 ILQHVWGLQQ RVELWSQAMY PDLGPGDKEE EE----EEEA ASSVEIATSG bmy_21630T0/1-1100 ILQHVWGLQQ RVELWSQAMY PDLGPGGKEE EE----EEEA ASSVEIATSG BACU010278/1-1104 ILQHVWGLQQ RVELWSQAMY PDLGPGDKEE EE----EEEA ASSVEIATGG 451 500 ENSBTAP00000029082/1-1013 VEGQTGEAQT QGEAPALRES LALGQVDVQL GLLLGFTVKK HMCKSRALQE ENSP00000363727/1-1103 VKCQ-AEALS QMEVPAHGES PAWAQAEVQP AVLAPAQAPA E-AEPVAQEE ENSTTRP00000005603/1-1091 VEGQTAEARA QGEAPALRES SAPGQADVQP GVPAQAQAPA E-AELLALAE bmy_21630T0/1-1100 VEGQTNEARA QGEAPALRES LALGQADVQP GVPAQAQAPA E-AELLALAE BACU010278/1-1104 VEGQTDEAQA QEEAPALRES LALGQADVQP GVPAQAQAPA E-AELLALAG 501 550 ENSBTAP00000029082/1-1013 MV-------- -----SDPQL HLGFSEKPLP CSLEWKRG-- -SYCLLALDG ENSP00000363727/1-1103 AEAPAPAPAP APAQDSEQEA HSG-GEPTFA SSLSVEEGHS ISDTVASSSE ENSTTRP00000005603/1-1091 AG------P- -LAQDHEQEA NSG-GEPTSA SSLSV-EGHS ISDTVASSSE bmy_21630T0/1-1100 AG------AP GLAQDHEQEA NSG-GEPTSA SSLSV-EGHS ISDTVASSSE BACU010278/1-1104 AG------AP GLAQDHEQEA NSG-GEPTSA SSLSVEEGHS ISDTVASSSE 551 600 ENSBTAP00000029082/1-1013 PDLCTTLPDN ILASGQPWKS RLASSTLEPR SSADTFSTPS PLTRKLRWHS ENSP00000363727/1-1103 LDSSGNSMNE AEAAGPL--A GLQASMPRER RDSGVGASLT RPCRKLRWHS ENSTTRP00000005603/1-1091 LDSSGNSTNE TEATGSL--A GLQASAPRER RDSGVGASLT RPYRKLRWHS bmy_21630T0/1-1100 LDSSGNSTNE TEATGSP--A GLQASAPRER RDSGVGASLT RPCRKLRWHS BACU010278/1-1104 LDSSGNSTNE TEATGSP--A GLQASAPRER RDSGVGASLT RPCRKLRWHS 601 650 ENSBTAP00000029082/1-1013 FQNSHRPSLN SESLEINRQF ASQIHLLHKG SLLRLTTFME KYTIPHKQGW ENSP00000363727/1-1103 FQNSHRPSLN SESLEINRQF AGQINLLHKG SLLRLTAFME KYTVPHKQGW ENSTTRP00000005603/1-1091 FQNSHRPSLN SESLEINRQF ASQIHLLHKG SLLRLTAFME KYTVPHKQGW bmy_21630T0/1-1100 FQNSHRPSLN SESLEINRQF ASQIHLLHKG SLLRLTAFME KYTVPHKQGW BACU010278/1-1104 FQNSHRPSLN SESLEINRQF ASQIHLLHKG SLLRLTAFME KYTVPHKQGW 651 700 ENSBTAP00000029082/1-1013 VWSVPKFMKR NKTPNYRGQQ VFGVPPLIHV QRTGQPLPQS IQQAMRYLRS ENSP00000363727/1-1103 VWSMPKFMRR NKTPDYRGQH VFGVPPLIHV QRTGQPLPQS IQQAMRYLRS ENSTTRP00000005603/1-1091 VWSVPKFMKR NKTPDYRGQH VFGVPPLIHV QRTGQPLPQS IQQAMRYLRS bmy_21630T0/1-1100 VWSVPKFMKR NKTPDYRGQH VFGVPPLIHV QRTGQPLPQS IQQAMRYLRS BACU010278/1-1104 VWSVPKFMKR NKTPDYRGQH VFGVLPLIHV QRTGQPLPQS IQQAMRYLRS 701 750 ENSBTAP00000029082/1-1013 QCLDQVGIFR KSGVKSRIQT LRQMNETSPD NVCYEGQSAY DVADLLKQYF ENSP00000363727/1-1103 QCLDQVGIFR KSGVKSRIQN LRQMNETSPD NVCYEGQSAY DVADLLKQYF ENSTTRP00000005603/1-1091 QCLDQXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_21630T0/1-1100 QCLDQVGIFR KSGVKSRIQN LRQMNETSPD NVCYEGQSAY DVADLLKQYF BACU010278/1-1104 QCLDQVGIFR KSGVKSRIQN LRQMNETSPD NVCYEGQSAY DVADLLKQYF 751 800 ENSBTAP00000029082/1-1013 RDLPEPIFTS KLTTTFLQIY QLLPKDQWLA ATQAATLLLP DENREVLQTL ENSP00000363727/1-1103 RDLPEPIFTS KLTTTFLQIY QLLPKDQWLA AAQAATLLLP DENREVLQTL ENSTTRP00000005603/1-1091 XXXXXXXXXX XXXXXXXXXX XXLPKDQWLA AAQAATLLLP DENREVLQTL bmy_21630T0/1-1100 RDLPEPIFTS KLTTTFLQIY QLLPKDQWLA AAQAATLLLP DENREVLQTL BACU010278/1-1104 RDLPEPIFTS KLTPTFLQIY QLLPKDQWLA AAQAATLLLP DENREVLQTL 801 850 ENSBTAP00000029082/1-1013 LYFLSDIASA EENQMTAGNL AVCLAPSIFH LNVSKKDNPS PRIKSKRSLV ENSP00000363727/1-1103 LYFLSDIASA EENQMTAGNL AVCLAPSIFH LNVSKKDSPS PRIKSKRSLI ENSTTRP00000005603/1-1091 LYFLSDIASA EENQMTAGNL AVCLAPSIFH LNVSKKDNPS PRIKSKRSLV bmy_21630T0/1-1100 LYFLSDIASA EENQMTAGNL AVCLAPSIFH LNVSKKDNPS PRIKSKRSLV BACU010278/1-1104 LYFLSDIASA EENQMTAGNL AVCLAPSIFH LNVSKKDNPS PRIKSKRSLV 851 900 ENSBTAP00000029082/1-1013 GRPGPRDLSE NMAATQGLSH MISDCKKLFQ VPQDMVLQLC GSYSAAELSP ENSP00000363727/1-1103 GRPGPRDLSD NMAATQGLSH MISDCKKLFQ VPQDMVLQLC SSYSAAELSP ENSTTRP00000005603/1-1091 GRPGPKDLSE NMAATQGLSH MISDCKKLFQ VPQDMVLQLC GSYSAAELSP bmy_21630T0/1-1100 GRPGPRDLSE NMAATQGLSH MISDCKKLFQ VPQDMVLQLC GSYSAAELSP BACU010278/1-1104 GRPGPRDLSE NMAATQGLSH MISDCKKLFQ VPQDMVLQLC GSYSAAELSP 901 950 ENSBTAP00000029082/1-1013 PGPALAELRQ ARAAGVSLSL YMEESIQELL HNAAERFKGW MSMPGPQHTE ENSP00000363727/1-1103 PGPALAELRQ AQAAGVSLSL YMEENIQDLL RDAAERFKGW MSVPGPQHTE ENSTTRP00000005603/1-1091 PGPALAELRQ ARASGMSLCL YMEESIQELL RDAAERFKGW MSVPGPQNTE bmy_21630T0/1-1100 PGPALAELRQ ARASGMSLSL FMEESIQELL RDAAERFKGW MSVPGPQHTE BACU010278/1-1104 PGPALAELRQ ARASGMSLSL YMEESIQELL RDAAERFKGW MSVPGPQHTE 951 1000 ENSBTAP00000029082/1-1013 LACKKAPDGH PLRVWKASTE VAAPPAVVLH RVLRERALWD EDLLRAQVLE ENSP00000363727/1-1103 LACRKAPDGH PLRLWKASTE VAAPPAVVLH RVLRERALWD EDLLRAQVLE ENSTTRP00000005603/1-1091 LACKKAPDGH PLCVWKASTE VAAPPAVVLH RVLRERALWD EDLLRAQVLE bmy_21630T0/1-1100 LACKKAPDGH PLCVWKASTE VAAPPAVVLH RVLRERALWD EDLLRAQVLE BACU010278/1-1104 LACKKAPDGH PLCVWKASAE VAAPPAVVLQ RVLRERALWD EDLLRAQVLE 1001 1050 ENSBTAP00000029082/1-1013 ALMPGVELYH YVTDSMAPHP CRDFVVLRMW RSDLPRGGCL LVSQSLDPEQ ENSP00000363727/1-1103 ALMPGVELYH YVTDSMAPHP CRDFVVLRMW RSDLPRGGCL LVSQSLDPEQ ENSTTRP00000005603/1-1091 ALMPGVELYH YVTDSMAPHP CRDFVVLRMW RSDLPRGGCL LVSQSLDPEQ bmy_21630T0/1-1100 ALMPGVELYH YVTDSMAPHP CRDFVVLRMW RSDLPRGGCL LVSQSLDPEQ BACU010278/1-1104 ALMPGVELYH YVTDSMAPHP CRDFVVLRMW RSDLPRGGCL LVSQSLDPEQ 1051 1100 ENSBTAP00000029082/1-1013 PVPESGVRAL MLTSQYLMEP CGLGRSRLTH ICRADLRGRS PDWYNKVFGH ENSP00000363727/1-1103 PVPESGVRAL MLTSQYLMEP CGLGRSRLTH ICRADLRGRS PDWYNKVFGH ENSTTRP00000005603/1-1091 PVPESGVRAL MLTSQYLMEP CGLGRSRLTH ICRADLRGRS PDWYNKVFGH bmy_21630T0/1-1100 PVPESGVRAL MLTSQYLMEP CGLGRSRLTH ICRADLRGRS PDWYNKVFGH BACU010278/1-1104 PVPESGVRAL MLTSQYLMEP CGLGRSRLTH ICRADLRGRS PDWYNKVFGH 1101 1150 ENSBTAP00000029082/1-1013 LCAMEVAKIR DSFPTLQAAG PETKL ENSP00000363727/1-1103 LCAMEVAKIR DSFPTLQAAG PETKL ENSTTRP00000005603/1-1091 LCAMEVAKIR DSFPTLQAAG PETKL bmy_21630T0/1-1100 LCAMEVAKIR DSFPTLQAAG PETKL BACU010278/1-1104 LCAMEVAKIR DSFPTLQAAG PETKL