KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:37:44 2014 Check: 00 .. Name: ENSBTAP00000029084/1-827 Len: 871 Check: 173 Weight: 1.00 Name: ENSTTRP00000007502/1-837 Len: 871 Check: 5370 Weight: 1.00 Name: bmy_04829T0/1-790 Len: 871 Check: 3700 Weight: 1.00 Name: BACU019379/1-844 Len: 871 Check: 6931 Weight: 1.00 // 1 50 ENSBTAP00000029084/1-827 MGGPHGGPFL LFHVLCFLLT LSEVGSQNSK ACALPCPPNS SCVNGTACRC ENSTTRP00000007502/1-837 MGG------L VFHVLCVLLT LSEAGSQNTT ACARQCPANS SCVGGDVCRC bmy_04829T0/1-790 MGGPHGVASF VFHVLCVLLT LSEAGSQNTR ---------- ---------- BACU019379/1-844 ---------- ---VLCVLLT LSEAGSQNTR DCAPRCPLHS SCVNGTACRC 51 100 ENSBTAP00000029084/1-827 APGFISFSGE IFTDPLESCD DINECGPPSP VDCGSSADCQ NTEGGYYCTC ENSTTRP00000007502/1-837 APGFSSLSGK DFTDRLGSCD DINECGPPLT VSCGKLADCQ NTEGGYDCMC bmy_04829T0/1-790 ---------- ---------- DVNECGPPLT VSCGKLADCQ NTEGGYHCMC BACU019379/1-844 TPGFSSSSGE IFTNFLESCD DINECGPPLT VSCGKLADCE NTEGGYHCMC 101 150 ENSBTAP00000029084/1-827 SPGYEPVSGA MIFRNESENT CRDVDECQHR PRVCKGRSVC -INTEGSYTC ENSTTRP00000007502/1-837 IPGYELTSGA TVFKNESENT CRXXXXXXXX XXXXXXXXXX LINTPGSYIC bmy_04829T0/1-790 SPGYELISGA TTFKNESENT CRDVDECQQK PKICKGRSIC -INTQGSYTC BACU019379/1-844 SPGYELISGA TTFKNESENT CQDVDECQQK PKICKGRSIC -INTQGSYTC 151 200 ENSBTAP00000029084/1-827 QCPPGLEFSP EDPRHCTDVN ECTSGKKPCH SSTHCLNSVG SYECRCRPGW ENSTTRP00000007502/1-837 RCPPGLKLNL EDPRHCTDVN ECTSGRNPCH NSSHCFNLVG TYKCHCRPGW bmy_04829T0/1-790 QCPPGLELNL EDPRLCTDVN ECTSGRNPCH SSSHCFNLVG TYKCHCRPGW BACU019379/1-844 QCPPGLELNL EDPRLCTDVN ECTSGRNPCH SSSHCFNLVG TYKCHCRPGW 201 250 ENSBTAP00000029084/1-827 KPIAGSPNGP NNTVCEDVDE CSSGQHQCHN STVCFNTVGS YTCHCREGWE ENSTTRP00000007502/1-837 KPVPGAPSSP NNTVCEDMDE CSSGQHQCHN STICVNNVGS YTCRCRQGWV bmy_04829T0/1-790 KPIPGAASGP NNTVCEDMDE CSSGQHQCHN STICVNTVGS YTCHCRQGWV BACU019379/1-844 KPIPGAASGP NNTVCEDTDE CSSGQHQCHN STVCVNTVGS YMCHCRQGWV 251 300 ENSBTAP00000029084/1-827 PKHGLKNKQK DTI-CKEISF PAWTAPPGIK SRSLSAFFER VQKMSRDFKP ENSTTRP00000007502/1-837 PKPGFQDKQM GTI-CEEISF PTWTAPPEIK SQSLSDFFER VQKMSIDFNS bmy_04829T0/1-790 PKPGFQDKQV GTISCEEISF PTWTAPPEIK SQSLSGFFER VQKMSIDFKS BACU019379/1-844 PKPGFQDKQV DTISCEEISF PTWTAPPEIK SQSLSGFFER VQKMSIDFKS 301 350 ENSBTAP00000029084/1-827 AMAKKSMQDL VGSVDDLLKN SGDLESLDQS SKHVTVTHLL SGLEQILRTL ENSTTRP00000007502/1-837 ALPQKTIQYL IMSLDDLLKT PGDLEALDLS SRHHTATYLF SGLEQILRTL bmy_04829T0/1-790 ALTQETIQYL IMSVDDLLKT PGDLEALDLS SRHHTATYLF SGLEQILRTL BACU019379/1-844 AFTQETIQYL IMSVDDLLKT PGDLEALDLS SRHHTATYLF SGLEQILRTL 351 400 ENSBTAP00000029084/1-827 AKAMPKGSFT YRSLDNTELS LVVQEQGKGN VTVGQSHARM LLDWAVAAAA ENSTTRP00000007502/1-837 AKAMSNGAFI YHSPGDTELS LMVQEQGNGN ITVGQSQARM LLDWAVAAGA bmy_04829T0/1-790 AKAMSGGSFI YHSPGDTELS LMVQEQGSGN ITVGQSHARM LLDWAVAAGA BACU019379/1-844 AKAMSGGSFI YHSPGDTELS LMVQEQGSGN ITVGQSHARM LLDWAVAAGA 401 450 ENSBTAP00000029084/1-827 EESGPTVVGI LSSQNMKKLL ANASLKLDSE K---LKETYK SPVRGAKVTL ENSTTRP00000007502/1-837 EKSGPTVVGI LSSPNMQKLL ANASLDLDLE KQTELKEIYE SPVRGAQLRL bmy_04829T0/1-790 EQSGPTVVGI LSSPNMQKLL ANASLDLDLE KQTELEEIYE NPVRGAQLRL BACU019379/1-844 EQSGPTVVGI LSSPNMQKLL ANASLDLDSE KQTELEEIYE SPVRGAQLRL 451 500 ENSBTAP00000029084/1-827 LSAVSSVFLS NTNTEKLDSN VSFAFAL--- ---------- ---------- ENSTTRP00000007502/1-837 LSAVNLVFLS NTNTDKLNSK VTFAFSHPES LGGEGGSDPM ---------- bmy_04829T0/1-790 LSAVNLVFLS NTNTDNLNSK VTFAFSHP-- ---------- ---------- BACU019379/1-844 LSAVNLVFLS NTNTDKLNSK VTFAFSHP-S LGGEGGSALL LTPWPRLTST 501 550 ENSBTAP00000029084/1-827 -------HEQ PELKPRQELI CAFWKKDSNG NGSWATTGCW KMGRGNGSIT ENSTTRP00000007502/1-837 -----AKWEM PG--TRQELI CAFWRSDSNR RGYWSTSGCQ TLGSGNGSTT bmy_04829T0/1-790 -------WEM PG--TRQELI CAFWKSDSNR RGYWATSGCQ TLGSGNGSTT BACU019379/1-844 TAPTCSQWEM PG--TRQELI CAFWKSDSNR RGYWATSGCQ TLGSGNGSTT 551 600 ENSBTAP00000029084/1-827 CQCSHLSSFA ILMAHYDVED PKLALITKVG LALSLACLLL CILTFLLVRP ENSTTRP00000007502/1-837 CQCNHLSSFA ILMAHYDVED WKLALITKVG LALSLVCLLL CILTFLLVRP bmy_04829T0/1-790 CQCNHLSSFA ILMAHYDVED WKLALITKVG LALSLVCLLL CILTFLLVRP BACU019379/1-844 CQCNHLSSFA ILMAHYDVED WKLALITKVG LALSLVCLLL CILTFLLVRP 601 650 ENSBTAP00000029084/1-827 IQGSRTTVHL HLCICLFVGS AIFLAGIENE GGEVGTRCRL VAVLLHYCFL ENSTTRP00000007502/1-837 IQGSRTTVHL HLCICLFVGS TIFLAGIENE GGQVGLRCRL VAAMLHYCFL bmy_04829T0/1-790 IQGSRTTVHL HLCICLFVGS TIFLVGIENE GGQVGLRCRL VAGLLHYCFL BACU019379/1-844 IQGSRTTVPL HLCICLFVGS TIFLVGIENE GGQVGLRCRL EAWLLHYCFL 651 700 ENSBTAP00000029084/1-827 AAFCWMSLEG VELYFLVVRV FQGQGLRKLW LCLIGYGVPL IIVGISAGAY ENSTTRP00000007502/1-837 AAFCWMSLEG -ELYFLVVRV FQGQGLRKRW LCLIGYGVPL FIVAVSAAIK bmy_04829T0/1-790 AAFCWMSLEG VELYFLVVRV FQGQGLRKRW LCLIGYGVPL FIVAVSAAIK BACU019379/1-844 AAFCWMSLEG VELYFLVVRV FQGQGLRKRW LCLIGYGVPL FIVAVSAAIK 701 750 ENSBTAP00000029084/1-827 SKGYGREKFC WLNFEGGFLW SFVGPVT--- ------FIVL GNAIIFVITV ENSTTRP00000007502/1-837 SQXXXXXXXX XXXXXXXXXX XXXXXXX--- ------XXXX CNAVIFVITV bmy_04829T0/1-790 IQGYGRPQYC WLDHANGFLW SFLGPVT--- ------FIVL CNAVIFVITV BACU019379/1-844 IQGYGRPQYY -----TGFL- ----PVSSKD TNPNSVLPTQ CNAVIFVITV 751 800 ENSBTAP00000029084/1-827 WKLTQKFSEI NPDIKKLKKA RVLTITAIAQ LFVLGCTWVF GLLLFDPESW ENSTTRP00000007502/1-837 WKLTQKFSEI NPDIKKLKKA RVLTITAIAQ LFVLGCTWVF GLFLFDQRSW bmy_04829T0/1-790 WKLTQKFSEI NPDIKKLKKA RVLTITAIAQ LFVLGCTWVF GLFLFDHSSW BACU019379/1-844 WKLTQKFSEI NPDIKKLKKA RVLTVTAIAQ LFVLGCTWVF GLFLFDHSSW 801 850 ENSBTAP00000029084/1-827 VLSYIFSILN CLQGFFLFVL YCLLNKKVRE EYRKWACMVA GNKYSEFATT ENSTTRP00000007502/1-837 VLCYVFSVLN SLQGLFLFVL HCLLNKKVRE EYRRWACMVT GNKYSEFATS bmy_04829T0/1-790 VLCYTFSILN CLQGLFLFVL YCLLNKKVRE EYRRWACMVT RNKYSEFATS BACU019379/1-844 VLCYTFSILN CLQGLFLFVL YCLLNKKVRE EYRRWACMVT RNKYSEFATS 851 900 ENSBTAP00000029084/1-827 TSGSGSSHNQ TQALRPSESG M ENSTTRP00000007502/1-837 TSGSGSSQSQ TQALRPSESG M bmy_04829T0/1-790 TSGSGSSHSQ TQALRPSESG M BACU019379/1-844 TSGSGSSHSQ TQALRPSESG M