KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:37:54 2014 Check: 00 .. Name: ENSTTRP00000006458/1-277 Len: 321 Check: 5532 Weight: 1.00 Name: ENSBTAP00000029128/1-238 Len: 321 Check: 8031 Weight: 1.00 Name: bmy_12512T0/1-321 Len: 321 Check: 1395 Weight: 1.00 Name: ENSP00000265720/1-317 Len: 321 Check: 9132 Weight: 1.00 // 1 50 ENSTTRP00000006458/1-277 ---------- ---------- ---------- ---------L AFRTLVRKYS ENSBTAP00000029128/1-238 MKSDYIQTTT CQERRKDPIE MFHSGQLVKI CAPMVRYSKL SFRTLVRKYD bmy_12512T0/1-321 MKSDCMQTTT CQERKKDPIE MLHSGQLVKV CAPMVRYSKL AFRTLVRKYS ENSP00000265720/1-317 MKSDCMQTTI CQERKKDPIE MFHSGQLVKV CAPMVRYSKL AFRTLVRKYS 51 100 ENSTTRP00000006458/1-277 CDLCYTPMIV AADFIRSIKA RDSEFTTNQX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000029128/1-238 CDLCYTPMIV AADFVRSAKA RDSEFTTNQG DCPLIVQFAA NDARLLSDAA bmy_12512T0/1-321 CDLCYTPMIV AADFIRSIKA RDSEFTTNQG DCPLIVQFAA NDARVLSDAA ENSP00000265720/1-317 CDLCYTPMIV AADFVKSIKA RDSEFTTNQG DCPLIVQFAA NDARLLSDAA 101 150 ENSTTRP00000006458/1-277 XXXXXXXXXX XXXXXXXXXW ALAEGYGACL INNPELVRDM VKQVRNQVEN ENSBTAP00000029128/1-238 RIVCPYANGI DINCGCPQRW ALAEGYGACL INKPELVRDM VKQVRNQVEN bmy_12512T0/1-321 RIVCPYANGI DINCGCPQRW ALAEGYGACL INNPELVQDM VKQVRNQVEN ENSP00000265720/1-317 RIVCPYANGI DINCGCPQRW AMAEGYGACL INKPELVQDM VKQVRNQVET 151 200 ENSTTRP00000006458/1-277 PRFSVSIKIR IHDDLTRTVD LCRKAEATGV SWITVHGRTV EERHQPVHYE ENSBTAP00000029128/1-238 PRFSVSIKIR IHDDLTRTVD LCRKAEATGV SWITVHGRTV EERHQPVHYE bmy_12512T0/1-321 PRFSVSIKIR IHDDLTRTVD LCRKAEATGV SWITVHGRTV EERHQPVHYE ENSP00000265720/1-317 PGFSVSIKIR IHDDLKRTVD LCQKAEATGV SWITVHGRTA EERHQPVHYD 201 250 ENSTTRP00000006458/1-277 AIKIIKENMS IPVIANGDIR SLKEAENVWH ITGTDGVMVA RGLLANPAIF ENSBTAP00000029128/1-238 AIKIIKESMS IPIVANGDIR SLKEAENVWH TTGTDGKK-- ---------- bmy_12512T0/1-321 AIKIIKENIS IPVIANGDIR SLKEAENVWH ITGTDGVMVA RGLLANPAIF ENSP00000265720/1-317 SIKIIKENMS IPVIANGDIR SLKEAENVWR ITGTDGVMVA RGLLANPAMF 251 300 ENSTTRP00000006458/1-277 AGYEETPLKC IWDWVDIALE LGTPYMCFHQ HLMYMMEKIT SRQEKRIFNA ENSBTAP00000029128/1-238 ---------- ---------- ---------- ---------- ---------- bmy_12512T0/1-321 AGYEETPLKC IWDWVDIALE LGTPYMCFHQ HLMYMMEKIT SRQEKRIFNA ENSP00000265720/1-317 AGYEETPLKC IWDWVDIALE LGTPYMCFHQ HLMYMMEKIT SRQEKRVFNA 301 350 ENSTTRP00000006458/1-277 LSSTSAVLDY LTDHYG---- - ENSBTAP00000029128/1-238 ---------- ---------- - bmy_12512T0/1-321 LSSTSAVLDY LTDHYGIDWT S ENSP00000265720/1-317 LSSTSAIIDY LTDHYGI--- -