KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:37:54 2014 Check: 00 .. Name: ENSTTRP00000006460/1-338 Len: 351 Check: 604 Weight: 1.00 Name: bmy_12511T0/1-221 Len: 351 Check: 4257 Weight: 1.00 Name: ENSP00000368414/1-348 Len: 351 Check: 5309 Weight: 1.00 Name: ENSBTAP00000029129/1-240 Len: 351 Check: 7784 Weight: 1.00 // 1 50 ENSTTRP00000006460/1-338 MTLQWAAVAT FLYAEIGLIL IFCLPFIPPQ RWQKIFSFSV WGKIATFWNK bmy_12511T0/1-221 MTLQWAAVAT FLYAEIGLIL IFCLPFIPPQ RWQKIFSFSV WGKIATFWNK ENSP00000368414/1-348 MTLQWAAVAT FLYAEIGLIL IFCLPFIPPQ RWQKIFSFNV WGKIATFWNK ENSBTAP00000029129/1-240 MTLQWTAVAT FLYAEIGLIL IFCLPFIPPQ RWQKIFSFSV WGKIASFWNK 51 100 ENSTTRP00000006460/1-338 AFLTIIVLLI VLFLDAVREV RKYSSTHAIE SSSASRPAAY EHTQMKLFRS bmy_12511T0/1-221 AFLTIIVLLI VLFLDAVREV RKYSSTHAIE RSSASRPSAY EHTQMKLFRS ENSP00000368414/1-348 AFLTIIILLI VLFLDAVREV RKYSSVHTIE KSSTSRPDAY EHTQMKLFRS ENSBTAP00000029129/1-240 AFLTIIILLI VLFLDAVREV RKYSSTHTIE KSSASRPAAY EHTQMKLFRS 101 150 ENSTTRP00000006460/1-338 QRNLYITGFS LFFWLVLRRL VTLITQLAKE LSNKGVLKVQ AENTNQAAKK bmy_12511T0/1-221 QRNLYITGFS LFFWLVLRRL VTLITQLAKE LSNKGVLKVQ AENTNQAAKK ENSP00000368414/1-348 QRNLYISGFS LFFWLVLRRL VTLITQLAKE LSNKGVLKTQ AENTNKAAKK ENSBTAP00000029129/1-240 QRNLYISGFS LFFWLVLRRL VTLITQLAKE LSHKGVLKHQ AENINQAAKK 151 200 ENSTTRP00000006460/1-338 FMEENERLKR XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXLSK bmy_12511T0/1-221 FMEENERLKR LLKNHGKEEE HILEAENKKL AEDKEKLKTE LKKASDG--- ENSP00000368414/1-348 FMEENEKLKR ILKSHGKDEE CVLEAENKKL VEDQEKLKTE LRKTSDALSK ENSBTAP00000029129/1-240 FMEENERLKR LLKNYGKEEE HILEAENKKL EEDKEKLKTE LKKASDALSK 201 250 ENSTTRP00000006460/1-338 AQNDMTVMKM QSEGLSKEYD RLLKEHSELQ HSSWSKLLSQ RSHKNSSIGN bmy_12511T0/1-221 ---NVACMHK SRKSIVIFYA VTLHCFS--- ---------- ---------- ENSP00000368414/1-348 AQNDVMEMKM QSERLSKEYD QLLKEHSELQ HSSFGEFLSK RSHKNGSIGK ENSBTAP00000029129/1-240 AQNDVMIMKM QSERLSKEYD RLLREHSELQ DRA------- --------GK 251 300 ENSTTRP00000006460/1-338 QTGSGKRSCS ER-QERPVNF MKEDCDTPCQ EDKFVIMLAS GKLKVQFRKT bmy_12511T0/1-221 ---------- ---------- ---------- ---------- ---------- ENSP00000368414/1-348 QTGSRKGSFR KRQQEKTVNF IKDTCNILCQ NDNFVMLASR ---KFKFRKM ENSBTAP00000029129/1-240 D--------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000006460/1-338 NCDQPVFFLM PHIGYVIMAL SQYLMMFQIY CKVCILALK- ---------- bmy_12511T0/1-221 ---------- ---------- ---------- ---------- ---------- ENSP00000368414/1-348 HYDRFVIFLM PHIGCIVMAL SKYLMMFQIY CKVCIPALKK NISMLNTIFT ENSBTAP00000029129/1-240 ---------- ---------- ---------- -KKCL----- ---------- 351 400 ENSTTRP00000006460/1-338 - bmy_12511T0/1-221 - ENSP00000368414/1-348 Y ENSBTAP00000029129/1-240 -