KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:55 2014 Check: 00 .. Name: BACU002416/1-1034 Len: 1171 Check: 368 Weight: 1.00 Name: ENSP00000294129/1-722 Len: 1171 Check: 2001 Weight: 1.00 Name: ENSBTAP00000029131/1-729 Len: 1171 Check: 5642 Weight: 1.00 Name: bmy_05984T0/1-828 Len: 1171 Check: 6151 Weight: 1.00 Name: ENSTTRP00000016432/1-721 Len: 1171 Check: 3368 Weight: 1.00 // 1 50 BACU002416/1-1034 MDVEPRAKGI LLEPFVHQVG GHSCVLRFNE TTLCKPLVPR EHQFYETLPA ENSP00000294129/1-722 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029131/1-729 ---------- ---------- ---------- ---------- ---------- bmy_05984T0/1-828 ---------- ---------- --APCVTGQG ERGEALLAWR PGSADPAVSP ENSTTRP00000016432/1-721 ---------- ---------- ---------- ---------- ---------- 51 100 BACU002416/1-1034 EMRKFTPQYK DVLIFVRFAD EFGASGNIET KEQGVVSVSF EEDEDRNLCL ENSP00000294129/1-722 -------MYR ALY------- ---------- --------AF RSAEPNALAF ENSBTAP00000029131/1-729 -------MYR ALY------- ---------- --------AF RSAEPNALAF bmy_05984T0/1-828 APARLTLMYR ALY------- ---------- --------AF RSAEPNALAF ENSTTRP00000016432/1-721 -------MYR ALY------- ---------- --------AF RSAEPNALAF 101 150 BACU002416/1-1034 IAYPLKGDHG TMDSVDNSDC EPKSKLLRWT NKKHHVLETE KIPKDWVRQH ENSP00000294129/1-722 AA-------- ---------- ---------- --GETFLVLE RSSAHW---- ENSBTAP00000029131/1-729 AA-------- ---------- ---------- --GETFLVLE RSSAHW---- bmy_05984T0/1-828 AA-------- ---------- ---------- --GETFLVLE RSSAHW---- ENSTTRP00000016432/1-721 AA-------- ---------- ---------- --GETFLVLE RSSAHW---- 151 200 BACU002416/1-1034 RKEEKMKSHK LEEEFEWLKK SEVLYYSVEK KGNVSSQLKH YNPWSMKCHQ ENSP00000294129/1-722 ---------- ------WL-- ---------- ---------- ---------- ENSBTAP00000029131/1-729 ---------- ------WL-- ---------- ---------- ---------- bmy_05984T0/1-828 ---------- ------WL-- ---------- ---------- ---------- ENSTTRP00000016432/1-721 ---------- ------WL-- ---------- ---------- ---------- 201 250 BACU002416/1-1034 QQLQRMKENA KHRNQYKFIL LENLTSRYEV PCVLDLKMGT RQHGDDASEE ENSP00000294129/1-722 --------AA RARS------ ---------- ---------- ---------- ENSBTAP00000029131/1-729 --------AA RARS------ ---------- ---------- ---------- bmy_05984T0/1-828 --------AA RARS------ ---------- ---------- ---------- ENSTTRP00000016432/1-721 --------AA RARS------ ---------- ---------- ---------- 251 300 BACU002416/1-1034 KAANQIRKCQ QSTSAVIGVR VCGMQVYQAG SGQLMFMNKY HGRKLSVQGF ENSP00000294129/1-722 ---------- ---------- ---------- -GETGYVPPA YLRRL----- ENSBTAP00000029131/1-729 ---------- ---------- ---------- -GETGYVPPA YLRRL----- bmy_05984T0/1-828 ---------- ---------- ---------- -GETGYVPPA YLRRL----- ENSTTRP00000016432/1-721 ---------- ---------- ---------- -GETGYVPPA YLRRL----- 301 350 BACU002416/1-1034 KEALFQFFHN GRYLRRELLG PVLRKLTELK SVLERQESYR FYSSSLLVIY ENSP00000294129/1-722 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029131/1-729 ---------- ---------- ---------- ---------- ---------- bmy_05984T0/1-828 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016432/1-721 ---------- ---------- ---------- ---------- ---------- 351 400 BACU002416/1-1034 DGKERPEVAL DSDAEDLEDL SEESADESAG AYAYKPIGTS SVDVRMIDFA ENSP00000294129/1-722 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029131/1-729 ---------- ---------- ---------- ---------- ---------- bmy_05984T0/1-828 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016432/1-721 ---------- ---------- ---------- ---------- ---------- 401 450 BACU002416/1-1034 HTTCRLYGLQ RPHQVRADRK GLEQDVLQAI DRAIEAVHNA AMRDGGKYSL ENSP00000294129/1-722 ---------- ---------Q GLEQDVLQAI DRAIEAVHNT AMRDGGKYSL ENSBTAP00000029131/1-729 ---------- ---------Q GLEQDVLQAI DRAIEAVHNA AMRDGGKYSL bmy_05984T0/1-828 ---------- ---------Q GLEQDVLQAI DRAIEAVHNA AMRDGGKYSL ENSTTRP00000016432/1-721 ---------- ---------Q GLEQDVLQAI DRAIEAVHNA AMRDGGKYSL 451 500 BACU002416/1-1034 EQRGILQKLI HHRKETLSRR GPSAPNPATM TPSTSDHHLD AAAARQPNGV ENSP00000294129/1-722 EQRGVLQKLI HHRKETLSRR GPSASSVAVM TSSTSDHHLD AAAARQPNGV ENSBTAP00000029131/1-729 EQRGILQKLI HHRKETLSRR GPSAPSAAAM TPSTSDHHLD AAATRQPNGM bmy_05984T0/1-828 EQRGILQKLI HHRKETLSRR GPSAPNPAAM TPSTSDHHLD AAAARQPNGV ENSTTRP00000016432/1-721 EQRGILQKLI HHRKETLSRR GPSAPNPAAM TPSTSDHHLD AAAARQPNGV 501 550 BACU002416/1-1034 CRAGFERQHS LPSSEYLGAD GGLY------ ---QIPPQPR RAAPATPPPP ENSP00000294129/1-722 CRAGFERQHS LPSSEHLGAD GGLYQI--PL PSSQIPPQPR RAAPTTPPPP ENSBTAP00000029131/1-729 CRAGFERQHS LPSSEYLGAD GGLYQVHDPT SVLQIPPQPR RAAPTTPPPP bmy_05984T0/1-828 CRAGFERQHS LPSSEYLGAD GGLY------ ---QIPPQPR RAAPTTPPPP ENSTTRP00000016432/1-721 CRAGFERQHS LPSSEYLGAD GGLYQI--PL LSSQIPPQPR RAAPATPPPP 551 600 BACU002416/1-1034 VKRRDREALV ALGS------ ---------- ---------- ----GGRNAT ENSP00000294129/1-722 VKRRDREALM ASGS------ ---------- ---------- ----GGHNTM ENSBTAP00000029131/1-729 VKRRDRDALM VLGS------ ---------- ---------- ----GGRNTT bmy_05984T0/1-828 VKRRDREALV ALGSGEKAGL GDWGGTLCLE WLLCLCQGTG GSRLGGKTGH ENSTTRP00000016432/1-721 VKRRDREALL ASGS------ ---------- ---------- ----GGRNTT 601 650 BACU002416/1-1034 PSG------- ------GSSV SSSS------ ---------- ---------- ENSP00000294129/1-722 PSG------- ------GNSV SSGS------ ---------- ---------- ENSBTAP00000029131/1-729 PSG------- ------GSSV SSGG------ ---------- ---------- bmy_05984T0/1-828 VSGQLGVLGL VGGSGVGTRP CTGGRGLWAW RGWGPQGAAL AQHPLSAHRR ENSTTRP00000016432/1-721 PSG------- ------GSSV SSGS------ ---------- ---------- 651 700 BACU002416/1-1034 ---------- SVGSTSLDTL YTGSSSSEPG PSCSPTPPPV PRRGTHTTVS ENSP00000294129/1-722 ---------- SVSSTSLDTL YTSSSPSEPG SSCSPTPPPV PRRGTHTTVS ENSBTAP00000029131/1-729 ---------- SVSSTSLDTL YTGSSSSELG PSCSPTPPPV PRRGALTAVS bmy_05984T0/1-828 PQRHALWGQF CVQSTSLDTL YTGSSSSEPG PSCSPTPPPV PRRGTHTTVS ENSTTRP00000016432/1-721 ---------- SVSSTSLDTL YTGSSSSEPG PSCSPTPPPV PRRGTHTTVS 701 750 BACU002416/1-1034 QAQPPPSKVP NSEPPTEEVA ----VDTAPA P--DELEALG ALSLGTTEEK ENSP00000294129/1-722 QVQPPPSKAS APEPPAEEE- ----VATGTT SASDDLEALG TLSLGTTEEK ENSBTAP00000029131/1-729 QAQPPPCKVP NPEPPTEEEA AAAVVETAPA PALDELEALG ALNLGATEEK bmy_05984T0/1-828 QAQPPPSKVP NSEPPTEEVA ----VDTAPA P--DELEALG ALNLGTTEEK ENSTTRP00000016432/1-721 QAQPPPSKVL NSEPPTEEVA ----VDTAPA P--DELEALG ALSLGTTEEK 751 800 BACU002416/1-1034 AVAETAVPRT IGAELMELVR RNTGLSHELC RVAIGVVVGH IQASVPASSP ENSP00000294129/1-722 AAAEAAVPRT IGAELMELVR RNTGLSHELC RVAIGIIVGH IQASVPASSP ENSBTAP00000029131/1-729 AVAEPAVPRT IGAELMELVR RNTGLSHELC RVAIGVVVGH IQASVPASSP bmy_05984T0/1-828 TLAETAVPRT IGAELMELVR RNTGLSHELC RVAIGVVVGH IQASVPASSP ENSTTRP00000016432/1-721 ALAETAVPRT IGAELMELVR RNTGLSHELC RVAIGVVVGH IQASVPASSP 801 850 BACU002416/1-1034 IMEQVLLSLV EGKDLSTALP SGQVCHDQQR LEVIFADLAR RKDDAQQRSW ENSP00000294129/1-722 VMEQVLLSLV EGKDLSMALP SGQVCHDQQR LEVIFADLAR RKDDAQQRSW ENSBTAP00000029131/1-729 VMEQVLLSLV EGKDLSTALP SGQVCHDQQR LEVIFADLAR RKDDAQQRSW bmy_05984T0/1-828 IMEQVLLSLV EGKDLSTALP SGQVCHDQQR LEVIFADLAR RKDDAQQRSW ENSTTRP00000016432/1-721 IMEQVLLSLV EGKDLSTALP SGQVCHDQQR LEVIFADLAR RKDDAQQRSW 851 900 BACU002416/1-1034 ALYEDEGVIR CYLEELLHIL TDADPEVCKK MCKRNEFESV LALVAYYQME ENSP00000294129/1-722 ALYEDEGVIR CYLEELLHIL TDADPEVCKK MCKRNEFESV LALVAYYQME ENSBTAP00000029131/1-729 ALYEDEGVIR CYLEELLHIL TDADPEVCKK MCKRNEFESV LALVAYYQME bmy_05984T0/1-828 ALYEDEGVIR CYLEELLHIL TDADPEVCKK MCKRNEFESV LALVAYYQME ENSTTRP00000016432/1-721 ALYEDEGVIR CYLEELLHIL TDADPEVCKK MCKRNEFESV LALVAYYQME 901 950 BACU002416/1-1034 HRVSLRLLLL KCFGAMCSLD AAIISTLVSS VLPVELARDM QTDTQDHQKL ENSP00000294129/1-722 HRASLRLLLL KCFGAMCSLD AAIISTLVSS VLPVELARDM QTDTQDHQKL ENSBTAP00000029131/1-729 HRVSLRLLLL KCFGAMCSLD AAIISTLVSS VLPVELARDM QTDTQDHQKL bmy_05984T0/1-828 HRVSLRLLLL KCFGAMCSLD AAIISTLVSS VLPVELARDM QTDTQDHQKL ENSTTRP00000016432/1-721 HRVSLRLLLL KCFGAMCSLD AAIISTLVSS VLPVELARDM QTDTQDHQKL 951 1000 BACU002416/1-1034 CYSALILAMV FSMGEAVPYA HY-------- ---------- ---------- ENSP00000294129/1-722 CYSALILAMV FSMGEAVPYA HYEHLGTPFA QFLLNIVEDG LPLDTTEQLP ENSBTAP00000029131/1-729 CYSALILAMV FSMGEAVPYA HYEHLGTPFA QFLLSIVEDG LPLDTTEQLP bmy_05984T0/1-828 CYSALILAMV FSMGEAVPYA HYEHLGTPFA QFLLSIVEDG LPLDTTEQLP ENSTTRP00000016432/1-721 CYSALILAMV FSMGEAVPYA HYEHLGTPFA QFLLSIVEDG LPLDTTEQLP 1001 1050 BACU002416/1-1034 ---------- -----APDQN FIMAALSKHA NVKIFSEKLL LLLNRGDDPV ENSP00000294129/1-722 DLCVNLLLAL NLHLPAADQN VIMAALSKHA NVKIFSEKLL LLLNRGDDPV ENSBTAP00000029131/1-729 DLCVNLLLAL NLHLPAPDQN VIMAALSKHA NVKIFSEKLL LLLNRGDDPV bmy_05984T0/1-828 DLCMNLLLAL NLHLPAPDQN FIMAALSKHA NVKIFSEKLL LLLNRGDDPV ENSTTRP00000016432/1-721 DLCMNLLLAL NLHLPAPDQN FIMAALSKHA NVKIFSEKLL LLLNRGDDPV 1051 1100 BACU002416/1-1034 RIFKHEPQPP HSVLKFLQDV FASPATAAIF YHTDMMALID ITVRHIADLS ENSP00000294129/1-722 RIFKHEPQPP HSVLKFLQDV FGSPATAAIF YHTDMMALID ITVRHIADLS ENSBTAP00000029131/1-729 RIFKHEPQPP HSILKFLQDV FASPTTAAIF YHTDMMALID ITVRHIADLS bmy_05984T0/1-828 RIFKHEPQPP HSVLKFLQDV FASPATAAIF YHTDMMALID ITVRHIADLS ENSTTRP00000016432/1-721 RIFKHEPQPP HSVLKFLQDV FASPATAAIF YHTDMMALID ITVRHIADLS 1101 1150 BACU002416/1-1034 PGDKLRMEYL SLMHAVVRST PYLQHRHRLP DLQATLRRIL TEEEASPQCQ ENSP00000294129/1-722 PGDKLRMEYL SLMHAIVRTT PYLQHRHRLP DLQAILRRIL NEEETSPQCQ ENSBTAP00000029131/1-729 PGDKLRMEYL SLMHAVVRST PYLQHRHRLP DLQATLRRIL AEEEASPQCQ bmy_05984T0/1-828 PGDKLRMEYL SLMHAVVRST PYLQHRHRLP DLQATLRRIL TEEEASPQCQ ENSTTRP00000016432/1-721 PGDKLRMEYL SLMHAVIRST PYLQHRHRLP DLQATLRRIL TEEEASPQCQ 1151 1200 BACU002416/1-1034 MDRMIVQEMC KEFPVLGEAP S ENSP00000294129/1-722 MDRMIVREMC KEFLVLGEAP S ENSBTAP00000029131/1-729 MDRMIVQEMC KEFPVLGEAP S bmy_05984T0/1-828 MDRMIVQEMC KEFPVLGEAP S ENSTTRP00000016432/1-721 MDRMIVQEMC KEFPVLGEAP S