KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:58 2014 Check: 00 .. Name: ENSTTRP00000006110/1-618 Len: 619 Check: 8253 Weight: 1.00 Name: ENSBTAP00000029140/1-617 Len: 619 Check: 9673 Weight: 1.00 Name: ENSP00000379326/1-618 Len: 619 Check: 4736 Weight: 1.00 Name: bmy_06780T0/1-384 Len: 619 Check: 7103 Weight: 1.00 Name: BACU008852/1-619 Len: 619 Check: 4365 Weight: 1.00 // 1 50 ENSTTRP00000006110/1-618 MEVKNFEVWD YVVFAALFVI SSGIGVFFAI RERKKATSRE FLVGGRQMTF ENSBTAP00000029140/1-617 MEVKNFAVWD YVVFAALFII SSGIGVFYAI KERKKATSRE FLVGGRQMSF ENSP00000379326/1-618 MEVKNFAVWD YVVFAALFFI SSGIGVFFAI KERKKATSRE FLVGGRQMSF bmy_06780T0/1-384 MEVKNFEVWD YVVFAALFVI SSGIGVFFAI RERKKATSRE FLVGGRQMTF BACU008852/1-619 MEVKNFEVWD YVVFAALFVI SSGIGVFFAI RERKKATSRE FLVGGRQMTF 51 100 ENSTTRP00000006110/1-618 GPVALSLTAS FMSAVTVLGT PAEVYRFGAS FIIFFIAYAF VILFTSELFL ENSBTAP00000029140/1-617 GPVALSLTAS FMSAVTVLGT PADVYRFGAS FVLFFITYGL VIILTSELFL ENSP00000379326/1-618 GPVGLSLTAS FMSAVTVLGT PSEVYRFGAS FLVFFIAYLF VILLTSELFL bmy_06780T0/1-384 GPVALSLTAS FMSAVTVLGT PAEVYRFGAS FVLFFIAYAF VIIFTSELFL BACU008852/1-619 GPVALSLTAS FMSAVTVLGT PAEVYRFGAS FILFFIAYAF VIIFTSELFL 101 150 ENSTTRP00000006110/1-618 PVFYRSGITS TYEXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000029140/1-617 PVFYRSGITS TYEYLQLRFN KPVRYAATVI YIVQTILYTG VVVYAPALAL ENSP00000379326/1-618 PVFYRSGITS TYEYLQLRFN KPVRYAATVI YIVQTILYTG VVVYAPALAL bmy_06780T0/1-384 PVFYRSGITS TYEYLQLRFN KPVRYAATAI YILQTILYTG VVVYAPALAL BACU008852/1-619 PVFYRSGITS TYEYLQLRFN KPVRYAATVI YILQTILYTG VVVYAPALAL 151 200 ENSTTRP00000006110/1-618 XXXXXXXXXX XXXXXXXXXX XXXXXGGLKA VVWTDAFQMV VMTVGFLTVL ENSBTAP00000029140/1-617 NQVTGFDLWG SVFATGIVCT FYCTLGGLKA VVWTDAFQMV VMIVGFLTVL ENSP00000379326/1-618 NQVTGFDLWG SVFATGIVCT FYCTLGGLKA VVWTDAFQMV VMIVGFLTVL bmy_06780T0/1-384 NQVTGFDLWG SVFATGIVCT FYCTLGGLKA VVWTDAFQMV VMTVGFLTVL BACU008852/1-619 NQVTGFDLWG SVFATGIVCT FYCTLGGLKA VVWTDAFQMV VMTVGFLTVL 201 250 ENSTTRP00000006110/1-618 IQGSADAGGL HNVLEQSANG SRLNIFDFDV DPLRRHTFWT ISVGGTFTWL ENSBTAP00000029140/1-617 IQGSTYAGGL HNVLEQAENG SRLNIFDFDI DPLRRHTFWT ISVGGTFTWL ENSP00000379326/1-618 IQGSTHAGGF HNVLEQSTNG SRLHIFDFDV DPLRRHTFWT ITVGGTFTWL bmy_06780T0/1-384 IQGSADAGGL HNVLEQSANG SRLSIFDFDV DPLRRHTFWT ISVGGTFTWL BACU008852/1-619 IQGSANAGGL HNVLEQSANG SRLNIFDFDV DPLRRHTFWT ISVGGTFTWL 251 300 ENSTTRP00000006110/1-618 GIYGVNQSTI QRCISCKTEK HAKLALYFNL LGLWVILACA VFSGLIMYSH ENSBTAP00000029140/1-617 GIYGVNQSTI QRCISCKTEK HAKLALYFNL LGLWIILLCA VFSGLTMYAH ENSP00000379326/1-618 GIYGVNQSTI QRCISCKTEK HAKLALYFNL LGLWIILVCA VFSGLIMYSH bmy_06780T0/1-384 GIYGVNQSTI QRCISCKTEK HAKLALYFNL LGLWVILACA VFSGLIMYSH BACU008852/1-619 GIYGVNQSTI QRCISCKTEK HAKLALYFNL LGLWVILACA VFSGLIMYSH 301 350 ENSTTRP00000006110/1-618 FKDCDPWTSG IISAPDQLMP YFVMELFATM PGLPGLFVAC AFSGTLSTVA ENSBTAP00000029140/1-617 FKDCDPWTSG IISAPDQLMP YFVMELFSTM PGLPGLFVAC AFSGTLSTVA ENSP00000379326/1-618 FKDCDPWTSG IISAPDQLMP YFVMEIFATM PGLPGLFVAC AFSGTLSTVA bmy_06780T0/1-384 FKDCDPWTSG IISAPDQLMP YFVMELFATM PGLPGLFVAC AFSGTLSTVA BACU008852/1-619 FKDCDPWTSG IISAPDQLMP YFVMELFATM PGLPGLFVAC AFSGTLSTVA 351 400 ENSTTRP00000006110/1-618 ASINALATVT FEDFVKSCFP HLSDKLSTWI SKGLC-LFGI ICTSMAVAAS ENSBTAP00000029140/1-617 ASINALATVT FEDFVKSCFP RLSDKLSTWI SKGLCLLFGV ICTSTAVAAS ENSP00000379326/1-618 SSINALATVT FEDFVKSCFP HLSDKLSTWI SKGLCLLFGV MCTSMAVAAS bmy_06780T0/1-384 ASINALATVT FEDFVKSCFP HLSDKLSTWT SKGL------ ---------- BACU008852/1-619 ASINALATVT FEDFVKSCFP HLSDKLSTWI SKGLCLLFGV LCTSMAVAAS 401 450 ENSTTRP00000006110/1-618 LLGSVVQAAL SIHGMCGGPM LGLFSLGILF PFVNWKGALG GLLTGIILSF ENSBTAP00000029140/1-617 LMGGVIQAAL SIHGMCGGPM LGLFSLGILF PFVNWKGALA GLLTGILLSF ENSP00000379326/1-618 VMGGVVQASL SIHGMCGGPM LGLFSLGIVF PFVNWKGALG GLLTGITLSF bmy_06780T0/1-384 ---------- ---------- ---------- ---------- ---------- BACU008852/1-619 LLGSVVQAAL SIHGMCGGPM LGLFSLGILF PFVNWKGALG GLLTGIILSF 451 500 ENSTTRP00000006110/1-618 WVAIGALIYP APTSKTWPLP LSTDQCVPSN VTESVPPLLS SRPAIAETWY ENSBTAP00000029140/1-617 WVAIGAFIYP APASKTWPLP LSTDQCGLSN VTESVPPVLS SRPAIAETWY ENSP00000379326/1-618 WVAIGAFIYP APASKTWPLP LSTDQCIKSN VTATGPPVLS SRPGIADTWY bmy_06780T0/1-384 ---------- ---------- ---------- ---------- ---------- BACU008852/1-619 WVAIGALIYP APTSKTWPLP LSTDQCVPSN VTESVHPLLS SRPAIAETWY 501 550 ENSTTRP00000006110/1-618 ALSYLYYSAV GCLGCMAAGV IISFATGHQK GKDIQPLLIR PVCNLFCFWS ENSBTAP00000029140/1-617 ALSYLHYSTV GCLGCIAAGV IISFLTGLQK GKDIPPLLIR PVCNLFCFWS ENSP00000379326/1-618 SISYLYYSAV GCLGCIVAGV IISLITGRQR GEDIQPLLIR PVCNLFCFWS bmy_06780T0/1-384 ---------- ---------- ---------- ---------- ---------- BACU008852/1-619 ALSYLYYSAV GCLGCVAAGV IISFVTGHQK GKDIQPLLIR PVCNLFCFWS 551 600 ENSTTRP00000006110/1-618 KKYKTLCWCG VQHDSGTEQE NLENGSTWKQ GADSVLRNGL GRESVVHVPG ENSBTAP00000029140/1-617 KKYKTLCWCG VQHDSGTEQE NLENDSTWKQ GAESVLQNGL KQESL--VPG ENSP00000379326/1-618 KKYKTLCWCG VQHDSGTEQE NLENGSARKQ GAESVLQNGL RRESLVHVPG bmy_06780T0/1-384 ---------- ---------- ---------- ---------- ---------- BACU008852/1-619 KKYKTLCWCG VQHDSGTEQE NLENGTTWKQ GAESVLRNGL RRESLAHVPG 601 650 ENSTTRP00000006110/1-618 YDPKDKNYDN MAFEKITHF ENSBTAP00000029140/1-617 YDPKDKSYDN MALEKITHF ENSP00000379326/1-618 YDPKDKSYNN MAFET-THF bmy_06780T0/1-384 ---------- --------- BACU008852/1-619 YDPKDKNYDN MAFEKITHF