KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:37:59 2014 Check: 00 .. Name: ENSP00000367104/1-665 Len: 759 Check: 2728 Weight: 1.00 Name: ENSBTAP00000029150/1-757 Len: 759 Check: 828 Weight: 1.00 Name: ENSTTRP00000006897/1-665 Len: 759 Check: 8319 Weight: 1.00 Name: bmy_01847T0/1-604 Len: 759 Check: 6956 Weight: 1.00 Name: BACU009277/1-468 Len: 759 Check: 9293 Weight: 1.00 // 1 50 ENSP00000367104/1-665 MYRRSYVFQT RKEQYEHADE ASRAAEPERP ADEGWAGATS LAALQGLGER ENSBTAP00000029150/1-757 MYRRSYVFQT RKEQYERAEE APRAAEPDRL AEAR-AAAPN LAALQGLGER ENSTTRP00000006897/1-665 MYRRSYVFQA RKEQYERAEE APHPVEPDSL VESR-AAAPS LAQLQGLGER bmy_01847T0/1-604 MFENSLPHSI LSSL-----E GPRVGRVGKH PEDEGFEDPS LSPQDG---- BACU009277/1-468 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000367104/1-665 VAAHVQRARA LEQRHAGLRR QLDAFQRLGE LAGPEDALAR QVESNRQRVR ENSBTAP00000029150/1-757 VAAHVQRARA LEQRHAVLRR QLDAFQRLDE LAGPEDALAR HVEGNRQRAR ENSTTRP00000006897/1-665 VAAHVQRARA LEQRHAVLRR QLDAFQRLDE LAGPEDALAR HVEGNRQRAR bmy_01847T0/1-604 --------KL LKAEHIKNQR LVNSF----- ---------- ---------- BACU009277/1-468 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000367104/1-665 DLEAERARLE RQGTEAQRAL DEFRSKYENE CECQLLLKEM LERLNKEADE ENSBTAP00000029150/1-757 DLAAERTRLE RQGAEAQRAL DEFRSKYENE CECQLLLKEM LERLNKEADE ENSTTRP00000006897/1-665 DLAAERTRLE RQGAEAQRAL CEFRSKYENE CECQLLLKDM LKRLNKEADE bmy_01847T0/1-604 --------IK RMSPEAKTPK DGFH------ ---------I ILVQSPEADE BACU009277/1-468 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000367104/1-665 ALLHNLRLQL EAQFLQDDIS AAKDRHKKNL LEVQTYISIL QQIIHTTPPA ENSBTAP00000029150/1-757 ALLRNLRLQI EAQFLQDDIS AAKDRYKKNL LEIQTYVTIL QQIIQTTPQA ENSTTRP00000006897/1-665 ALLSNLRLQI EAQFLQDDIS AAKDRYKKNL LEIQTYVSIL QQIIQTTPQA bmy_01847T0/1-604 ALLSNLRLQI EAQFLQDDIS AAKDRYKKNL LEIQTYVSIL QQIIQTTPQA BACU009277/1-468 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000367104/1-665 SIVTSGMREE KLLTEREVAA LRSQLEEGRE VLSHLQAQRV ELQAQTTTLE ENSBTAP00000029150/1-757 AAITSGMREE KLLTEREAAA LQCQLEDGRE MICLLQAQRT ELQAQTAALE ENSTTRP00000006897/1-665 AAVTSGTREA KLLTEREVAT LQSQLEDSQE VLCLLQAQRA ELQAQTAALE bmy_01847T0/1-604 AAITSGMRE- ---------- --SQLEDGQE VLCLLQAQRA ELQAQTAALE BACU009277/1-468 ---------- ---------- ---------- ---------- --MRETAALE 251 300 ENSP00000367104/1-665 QAIKSAHECY DDEIQLYNEQ IETLRKEIEE TERVLEKSSY DCRQLAVAQQ ENSBTAP00000029150/1-757 QAIRDAHECY DDEIQLYNEQ IDTLRKEIEE AERSLERSSY DCRQLVVVQQ ENSTTRP00000006897/1-665 QAIRDAHECY DEEIQLYNEQ IDTLRKETEE AERSLERSSY DCRQLVVAQQ bmy_01847T0/1-604 QAIKDAHECY DEEIQLYNEQ IDTLRKEIEE AERSLERSSY DCRQLVVAQQ BACU009277/1-468 QAIKDAHECY DEEIQLYNEQ IDTLRKEIEE AERSLERSSY DCRQLVVAQQ 301 350 ENSP00000367104/1-665 TLKNELDRYH RIIEIEGNRL TSAFIETPIP LFTQSHGVSL STGSGGKDLT ENSBTAP00000029150/1-757 TLRNELDRYH RIIENEGNRL SSAFIETPIT LYTASHGASL SPRHGGKDLT ENSTTRP00000006897/1-665 TLRNELDRYH RIIENEGNRL SSAFIETPIT LYTVSHGASL SPRHGVKDLA bmy_01847T0/1-604 TLRNELDRYH RIIENEGNRL SSAFTETPIT LYTVSHGASF SPRHGGKDLT BACU009277/1-468 TLRNELDRYH RIIENEGNRL SSAFTETPIT LYTVSHGASF SPRHGGKDLT 351 400 ENSP00000367104/1-665 RALQDITAAK PRQKALPKNV PRRKEIITKD KTNGALEDAP LKGLEDTKLV ENSBTAP00000029150/1-757 RAVQDITAAK PRLKGLPKNL PRKKEMVAKD RADEILEETL LRGPEDMKPG ENSTTRP00000006897/1-665 RAVQDITIAK PRQKGLPKNV PRKKEIIAKD KADASREEAP LRGPEDAKPG bmy_01847T0/1-604 RAVQDITIAK PRQKGLPKNV PRKKEIIAKD KADESLEEAP LRGPEDPKPG BACU009277/1-468 RAVQDITIAK PRQKGLPKNV PRKKEIIAKD KADESLEEAP LRGPEDPKPG 401 450 ENSP00000367104/1-665 QVVLKEESES KFESESKEVS PLTQEGAPED VPDGGQISKG FGKLYRKVKE ENSBTAP00000029150/1-757 RVVIKEEGES KLEPGDEEAS PPTQEGAPED VPDGGKISKA FEKLGKMIKE ENSTTRP00000006897/1-665 QVVPKEEGES KLESGDGEAS PPTVDGAPED VPDGGKISKA FEKLGRMVKE bmy_01847T0/1-604 QVVLKEESES KLESGDGETS PPTVDGAPED VPDGGKISKA FEKLGKKVKE BACU009277/1-468 QMVLKEEGES KLESGDGEAS PPTVDGAPED VPDGGKISKA FEKLGKKVKE 451 500 ENSP00000367104/1-665 KVRSPKEPET PTELYTKERH VLVTGDANYV DPRFYVSSIT AKGGVAVSVA ENSBTAP00000029150/1-757 KVKGPKEPEP PADLYTKGRY VMVSGDGSFV DPGFCVFSVP AKGGVVVSKG ENSTTRP00000006897/1-665 RVKGPKEPEP PADLYTKGRY VLVSGDANFV DPGFCSFSVP AKGGVVVSKG bmy_01847T0/1-604 RVKGPKEPEP PADLYTKGRY VLVSGDANFV DPGFCSFSVP AKGGVVVSKG BACU009277/1-468 RVKGPKEPEP PADLYTKGRY VLVSGDANFV DPGFCSLSVP AKGGVVVTKG 501 550 ENSP00000367104/1-665 EDSVLYDGQV EPSPESPKPP LENGQV---- ---------- ---------- ENSBTAP00000029150/1-757 DDSVPPDSGV EPSPQQPEPP LEEGQGPPQE KEDGLKEEGG PPEGKGEPPE ENSTTRP00000006897/1-665 DDSVLPDSHV EPSPQQPEPP LEDGEG---- ---------- ---------- bmy_01847T0/1-604 DDSVRPDSHV EPSPQQPEPP LEDGEG---- ---------- ---------- BACU009277/1-468 DDAVRPDSHV EPSPQQPEPP LEDGEGPPQG KEDGL----- ---------- 551 600 ENSP00000367104/1-665 ---------- ---------- ---------- --GLQE---- ---------- ENSBTAP00000029150/1-757 GKGDSVKEEG GPPEGKGDGV KEEGGPPEGK GDGVKEEGGP PEGKGDGVKK ENSTTRP00000006897/1-665 ---------- ---------- ---------- --GLQG---- ---------- bmy_01847T0/1-604 ---------- ---------- -----PPPGK EDGLEDGEGP PEG------- BACU009277/1-468 ------EDGE GPPQGKEDGL EDGEGPPQGK EDGLEDGEGP PEG------- 601 650 ENSP00000367104/1-665 ---------- ---------- -KEDGQPIDQ QPIDKEIEPD GAELEGPEEK ENSBTAP00000029150/1-757 EGEPPEGKGE GLKEEEGPLQ EKEDGRPPTP HPADKGDEKN AKELKGLQGK ENSTTRP00000006897/1-665 ---------- ---------- -KEDGHPPTP HTVDKGDEMN DEELKGPQGK bmy_01847T0/1-604 ---------- ---------- -KEDGHPPTP HTADKGDEMN AEELKGPQGK BACU009277/1-468 ---------- ---------- -KEDGQPSTP PTADKGDEMN AEELKGPQGK 651 700 ENSP00000367104/1-665 REGEERDEES RRPCAMVTPG AEEPSIPEPP KPAADQDGAE VLGTRSRSLP ENSBTAP00000029150/1-757 QDDQK-EEGA RGPCPMVAPG PEGPSTPRSQ GPQVILGGSE GHGARSGSRL ENSTTRP00000006897/1-665 QDGQKEEEGA RKPCVTVSPG PEGPSTPQSQ GPQVTQGGSD GPGAWTSSLP bmy_01847T0/1-604 QDGQKEEEEA GEPCPTVTPG PEGPSTPQSQ EPQVTQGESD GPGARSSSLP BACU009277/1-468 QDGQKEEEGA GEPCPAVTPG PEGPSTPQSQ EPQVTQGESD GPGARRSSLP 701 750 ENSP00000367104/1-665 EKGPPKALAY KTVEVVESIE KISTESIQTY EETAVIVETM IGKTKSDKKK ENSBTAP00000029150/1-757 ARSPPRKLAY EKVEVMESIE KFSTESIQTY EETAVIVETM IEKTKANKKK ENSTTRP00000006897/1-665 ARSPPRTLAY EKVEVMESIE KFSTDSIQTY EETAVIVETV IENTKANKKK bmy_01847T0/1-604 ARSPPRMLAY EKVEVMESVE KFSTDSIQTY EETAVIVETM IEKTKANKKK BACU009277/1-468 ARSPPRTLAY EKVEVMESVE KFSTDSIQTY EETAVIVETM IEKTKADKKK 751 800 ENSP00000367104/1-665 SGEKSS--- ENSBTAP00000029150/1-757 LGEKGSSSA ENSTTRP00000006897/1-665 LEEKCSS-- bmy_01847T0/1-604 LEEKCSSNA BACU009277/1-468 LEEKCSSNA