KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:38:00 2014 Check: 00 .. Name: ENSP00000310244/1-797 Len: 848 Check: 4198 Weight: 1.00 Name: ENSBTAP00000029159/1-797 Len: 848 Check: 2399 Weight: 1.00 Name: ENSTTRP00000011564/1-738 Len: 848 Check: 4273 Weight: 1.00 Name: bmy_15997T0/1-672 Len: 848 Check: 3753 Weight: 1.00 Name: BACU008545/1-797 Len: 848 Check: 2548 Weight: 1.00 // 1 50 ENSP00000310244/1-797 MGTLGKAREA PRKPSHGCRA ASKARLEAKP ANSPFPSHPS LAHITQFRMM ENSBTAP00000029159/1-797 MGTLGKAREA PRKPTHGCRA VPKARLEAKP ASSPLPCHPG LAQITQFRMM ENSTTRP00000011564/1-738 ---------- --KPSHGCRA APKARLEG-- SSSLLASHPS -DQITQFXXX bmy_15997T0/1-672 ---------- ---------- ---------- ---------- ---------- BACU008545/1-797 MGTLGKAREA PRKP-HGCRA APKARLEGKP SSSPLPSHPS LAQITQFRMM 51 100 ENSP00000310244/1-797 VSLGHLAKGA SLDDLIDSCI QSFDADGNLC RSNQLLQVML TMHRIVISSA ENSBTAP00000029159/1-797 VPLGHFAKGA SLDDLIDSCV QSFDADGNLC RSNQLLQVML TMHRILISSA ENSTTRP00000011564/1-738 XXXXXXXXXX XXXXXXXXXX XXXXADGNLC RSNQLLQVLL TMHRILISSA bmy_15997T0/1-672 ---------- ---------- ---------- ---------- ---------- BACU008545/1-797 VSLGHLAKGA SLDDLIDSCV QSFDADGNLC RSNQLLQVML TMHRILISSA 101 150 ENSP00000310244/1-797 ELLQKVITLY KDALAKNSPG LCLKICYFVR YWITEFWVMF KMDASLTDTM ENSBTAP00000029159/1-797 ELLQKVITLY PDALAKNSPG LCLKICYFVR YWITEFWIMF KMDTSLASTM ENSTTRP00000011564/1-738 ELLQKVITLY PDALAKNSPG LCLKICYFVR YWITEFWIMF KIDASLASTM bmy_15997T0/1-672 ---------- ---------- ---------- --------MF KMDASLASTM BACU008545/1-797 ELLQKVITLY KDALAKNSPG LCLKICYFVR YWITEFWIMF KMDASLASTM 151 200 ENSP00000310244/1-797 EEFQELVKAK GEELHCRLID TTQINARDWS RKLTQRIKSN TSKKRKVSLL ENSBTAP00000029159/1-797 EEFQELVKAN GEELHCRLID TTQINARDWS RKLTQRIKSN TSKKRKVSLL ENSTTRP00000011564/1-738 EEFQELVKAN GEELHCRLID TTQINARDWS RKLTQRIKSN TSKKRKVSLL bmy_15997T0/1-672 EEFQELVKAN GQELHCRLID TTQINARDWS RKLTQRIKSN TSKKRKVSLL BACU008545/1-797 EEFQELVKAN GQELHCRLID TTQINARDWS RKLTQRIKSN TSKKRKVSLL 201 250 ENSP00000310244/1-797 FDHLEPEELS EHLTYLEFKS FRRIS----- ---------- ---------- ENSBTAP00000029159/1-797 FDHLEPEELS EHLTFLEFKS FRRIS----- ---------- ---------- ENSTTRP00000011564/1-738 FDHLEPEELS EHLTYLEFKS FRRIS----- ---------- ---------- bmy_15997T0/1-672 FDHLEPEELS EHLTYLEFKS FRRISVCTRG AGEKLPWDIS ENNQRNSTGH BACU008545/1-797 FDHLEPEELS EHLTYLEFKS FRRIS----- ---------- ---------- 251 300 ENSP00000310244/1-797 ---------- ---------- -----FSDYQ NYLVNSCVKE NPTMERSIAL ENSBTAP00000029159/1-797 ---------- ---------- -----FSDYQ NYLVNSCVKE NPTMERSIAL ENSTTRP00000011564/1-738 ---------- ---------- -----FSDYQ NYLVNSCVKE NPTMERSIAL bmy_15997T0/1-672 PPPNPRSPLS AEYQSGSPDE FLFPQFSDYQ NYLVNSCVKE NPTMERSIAL BACU008545/1-797 ---------- ---------- -----FSDYQ NYLVNSCVKE NPTMERSIAL 301 350 ENSP00000310244/1-797 CNGISQWVQL MVLSRPTPQL RAEVFIKFIQ VAQKLHQLQN FNTLMAVIGG ENSBTAP00000029159/1-797 CNGISQWVQL MVLSRPTPQL RAEVFIKFIQ VAQKLHQLQN FNTLMAVIGG ENSTTRP00000011564/1-738 CNGISQWVQL MVLSRPTPQL RAEVFIKFIQ VAQKLHQLQN FNTLMAVIGG bmy_15997T0/1-672 CNGISQWVQL MVLSRPTPQL RAEVFIKFIQ VAQKLHQLQN FNTLMAVIGG BACU008545/1-797 CNGISQWVQL MVLSRPTPQL RAEVFIKFIQ VAQKLHQLQN FNTLMAVIGG 351 400 ENSP00000310244/1-797 LCHSSISRLK ETSSHVPHEI NKVLGEMTEL LSSSRNYDNY RRAYGECTDF ENSBTAP00000029159/1-797 LCHSSISRLK ETSSHVPHEI NKVLGEMTEL LSSCRNYDNY RRAYGECTDF ENSTTRP00000011564/1-738 LCHSSISRLK ETSSHVPHEI NKVLGEMTEL LSSCRNYDNY RRAYGECTHF bmy_15997T0/1-672 LCHSSISRLK ETSSHVPHEI NKVLGEMTEL LSSCRNYDNY RRAYGECTHF BACU008545/1-797 LCHSSISRLK ETSSHVPHEI NKVLGEMTEL LSSCRNYDNY RRAYGECTHF 401 450 ENSP00000310244/1-797 KIPILGVHLK DLISLYEAMP DYLEDGKVNV HKLLALYNHI SELVQLQEVA ENSBTAP00000029159/1-797 KIPILGVHLK DLISLYEAMP DYLEEGKVNV HKLLALYNHI NELVQLQEVP ENSTTRP00000011564/1-738 KIPILGVHLK DLISLYEAMP DYLEEGKVNV HKLLALYNHI NELVQLQEVA bmy_15997T0/1-672 KIPILGVHLK DLISLYEAMP DYLEEGK--- ---------- ---------- BACU008545/1-797 KIPILGVHLK DLISLYEAMP DYLEEGKVNV HKLLALYNHI NELVQLQEVA 451 500 ENSP00000310244/1-797 PPLEANKDLV HLLTLSLDLY YTEDEIYELS YAREPRNHRA PPLTPSKPPV ENSBTAP00000029159/1-797 PPLEANKDLV HLLTLSLDLY YTEDEIYELS YAREPRNHKA PPLTPSKPPV ENSTTRP00000011564/1-738 PPLEANKDLV HLLTLSLDLY YTEDEIYELS YAREPRNHKA PPLTPSKPPV bmy_15997T0/1-672 ---------- ----LSLDLY YTEDEIYELS YAREPRNHKA PPLTPSKPPV BACU008545/1-797 PPLEANKDLV HLLTLSLDLY YTEDEIYELS YAREPRNHKA PPLTPSKPPV 501 550 ENSP00000310244/1-797 VVDWASGVSP KPDPKTISKH VQRMVDSVFK NYDHDQDGYI SQEEFEKIAA ENSBTAP00000029159/1-797 VVDWASGVSP KPDPKTISKH VQRMVDSVFK NYDHDQDGYI SQEEFEKIAA ENSTTRP00000011564/1-738 VVDWASGVSP KPDPKTISKH VQRMVDSVFK NYDHDQDGYI SQEEFEKIAA bmy_15997T0/1-672 VVDWASGVSP KPDPKTISKH VQRMVDSVFK NYDHDQDGYI SQEEFEKIAA BACU008545/1-797 VVDWASGVSP KPDPKTISKH VQRMVDSVFK NYDHDQDGYI SQEEFEKIAA 551 600 ENSP00000310244/1-797 SFPFSFCVMD KDREGLISRD EITAYFMRAS SIYSKLGLGF PHNFQETTYL ENSBTAP00000029159/1-797 SFPFSFCVMD KDREGLISRD EITAYFMRAS SIYSKLGLGF PHNFQETTYL ENSTTRP00000011564/1-738 SFPFSFCVMD KDREGLISRE EITAYFMRAS SIYSKLGLGF PHNFQETTYL bmy_15997T0/1-672 SFPFSFCVMD KDREGLISRE EITAYFMRAS SIYSKLGLGF PHSFQETTYL BACU008545/1-797 SFPFSFCVMD KDREGLISRE EITAYFMRAS SIYSKLGLGF PHSFQETTYL 601 650 ENSP00000310244/1-797 KPTFCDNCAG FLWGVIKQGY RCKDCGMNCH KQCKDLVVFE CKKRAKNPVA ENSBTAP00000029159/1-797 KPTFCDNCAG FLWGVIKQGY RCKDCGMNCH KQCKDLVVFE CKKRAKNSTA ENSTTRP00000011564/1-738 KPTFCDNCAG FLWGVIKQGY RCKDCGMNCH KQCKDLVVFE CKKRAKNSTA bmy_15997T0/1-672 KPTFCDNCAG FLWGVIKQGY RCKDCGMNCH KQCKDLVVFE CKKRAKNSTA BACU008545/1-797 KPTFCDNCAG FLWGVIKQGY RCKDCGMNCH KQCKDLVVFE CKKRAKNSTA 651 700 ENSP00000310244/1-797 PTENNTSVGP VSNLCSLGAK DLLHAPEEGP FTFPNGEAVE -HGEESKDRT ENSBTAP00000029159/1-797 PTEISTSVGP TSNLCSLGAK DLLHAPEEGP FTFPNGEAAE -HSEESKDRT ENSTTRP00000011564/1-738 PTENSTSVGP TSNLCSLGAK DLHHAPEEGP FTFPNGEAVE -HNEESKDRT bmy_15997T0/1-672 PTENSTSVGP ASSLCSLGAK DLLHAPEEGH FTFPNGEAVE -HNEESKDRT BACU008545/1-797 PTENSTSVGP ASSLCSLGAK DLLHAPEEGH FTFPNGEAVE QHNEESKDRT 701 750 ENSP00000310244/1-797 IMLMGVSSQK ISLRLKRAVA HKATQTESQP WIGSEGPSGP FVLSSPRKTA ENSBTAP00000029159/1-797 IMLMGVSSQK ISVRLKRTVA HMATQTEALS WPGSEGPSSH FVLSSPRKTA ENSTTRP00000011564/1-738 IMLMGVSSQK ISVRLKRTVA HKATQTEALS WLGSEGPSSH FVLSSPRKTA bmy_15997T0/1-672 IMLMGVSSQK ISVRLKRTVA HKATQTEALS WLGSEGPSSH FVLSSPRKTA BACU008545/1-797 IMLMGVSAQK ISVRLKRTVA HKATQTEALS WLGSEGPSSH FVLSSPRKTA 751 800 ENSP00000310244/1-797 QDTLYVLPSP TSPCPSPVLV RKRAFVKWEN KDSLIKSKEE LRHLRLPTYQ ENSBTAP00000029159/1-797 QDTLYVLPSP TSPCPSPVLV RKRAFVKWEN KESFIKSKEE LRHLRLPTYQ ENSTTRP00000011564/1-738 QDTLYVLPST TSPCPSPVLV RKRAFVKWEN KESLIKSKEE LRHLRLPTYQ bmy_15997T0/1-672 QDTLYVLPST TSPCPSPVLV RKQAFVKWEN KESLIKSKEE LRHLRLPTYQ BACU008545/1-797 QDTLYVLPST TSPCPSPVLV RKQAFVKWEN KESLIKSKEE LRHLRLPTYQ 801 850 ENSP00000310244/1-797 ELEQEINTLK ADNDALKIQL KYAQKKIESL QLEKSNHVLA QMEQGDCS ENSBTAP00000029159/1-797 ELEQEINTLK ADNNALKIQL KYAQKKIETL QLARNNHVLA QMEQGDCS ENSTTRP00000011564/1-738 ELEQ------ ---------- ---------- ---------- -------- bmy_15997T0/1-672 ELEQEINTLK ADNNALKIQL KYAQKKIETL QLARSNHVLA QMEQGDCS BACU008545/1-797 ELEQEINTLK ADNNALKIQL KYAQKKIETL QLARSNHVLA QMEQGDCS