KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:38:03 2014 Check: 00 .. Name: ENSTTRP00000010435/1-647 Len: 685 Check: 7847 Weight: 1.00 Name: ENSP00000355741/1-647 Len: 685 Check: 3690 Weight: 1.00 Name: ENSBTAP00000029167/1-648 Len: 685 Check: 9129 Weight: 1.00 Name: bmy_16504T0/1-683 Len: 685 Check: 3317 Weight: 1.00 Name: BACU001651/1-647 Len: 685 Check: 8661 Weight: 1.00 // 1 50 ENSTTRP00000010435/1-647 MASMLGDTIM VVKGLAKLTQ AAVETHLQHP GLSRELIMAA GALQSTAAEQ ENSP00000355741/1-647 MAAILGDTIM VAKGLVKLTQ AAVETHLQHL GIGGELIMAA RALQSTAVEQ ENSBTAP00000029167/1-648 MAAMLGDAIM LIKGFVKLTQ AAVETHLQHL GLSGELLMAV RALQSTATEQ bmy_16504T0/1-683 MAAMLGDTIM VVKGLAKLTQ AAVETHLQHL GLGRELIMAA RALQSTAAEQ BACU001651/1-647 MAAMLGDTIM VVKGLAKLTQ AAVETHLQHL GLGRELIMAA RALQSTAAEQ 51 100 ENSTTRP00000010435/1-647 IGMVLGQVQG QEKHEESYTK SSDDPQAEFY SSGLRAEGAS EEPSVASSPD ENSP00000355741/1-647 IGMFLGKVQG QDKHEEYFAE NFGGPEGEFH FSVPHAAGAS TDFSSASAPD ENSBTAP00000029167/1-648 VGMVFGQVQG QETPEEYYSE SLDDPEGAFH FSGMRAESAS ADVSAASSPE bmy_16504T0/1-683 IGMVLGQVQG QEKHEESYSQ SFDDLQAEFH FSGPRAEGAS EELSAASSPD BACU001651/1-647 IGMVLGQVQG QEKHEESYSQ SSDDPQAEFH FSGPRAEAAS EELSAASSPD 101 150 ENSTTRP00000010435/1-647 QS-PPPWDQA R-SQGPAPAY VASGPFGEGG LRGQAASAMG RVNGPLFADP ENSP00000355741/1-647 QSAPPSLGHA H-SEGPAPAY VASGPFREAG FPGQASSPLG RANGRLFANP ENSBTAP00000029167/1-648 QS-PPPWAHA AGSEGPAPAY VASAPFREGG VLGQAASPLG RVNGRLFASP bmy_16504T0/1-683 QS-PPPWDHA C-SQGPAPAY VASGPFREGG LRGQAASPTG RVNGRLFADP BACU001651/1-647 QS-PPPWDHA R-SQGPAPAY VASGPFREGG LRGQAASPTG RVNGRLFADP 151 200 ENSTTRP00000010435/1-647 RDPFSATGLQ RRFYHQDQSP VGGLTAEDIE KARQAKARPE SKPHKQMLSE ENSP00000355741/1-647 RDSFSAMGFQ RRFFHQDQSP VGGLTAEDIE KARQAKARPE NKQHKQTLSE ENSBTAP00000029167/1-648 RDPFSAPGLQ RRVYHQDQSS MGGLTAEDIE KARQAKARPE SKPHKQALSE bmy_16504T0/1-683 RDPSSATGLQ RRFYHQDQSP VGGLTAEDIE KARQAKARPE SKPHKQTLSE BACU001651/1-647 RDPSSATGLR RRFYHQDQSP VGGLTAEDIE KARQAKARPE SKPHKQMLSE 201 250 ENSTTRP00000010435/1-647 RARERKVPVT RIGRLANFGG LAVGLGFGAL AEVAKKSLRP EDPSGKKAVL ENSP00000355741/1-647 HARERKVPVT RIGRLANFGG LAVGLGFGAL AEVAKKSLRS EDPSGKKAVL ENSBTAP00000029167/1-648 HARERKVPVT RIGRLANFGG LAVGLGFGAL AEVAKKSLRP DDPSGKKAVL bmy_16504T0/1-683 RARERKVPVT RIGRLANFGG LAVGLGFGAL AEVAKKSLRP EDPSGKKAVL BACU001651/1-647 RARERKVPVT RIGRLANFGG LAVGLGFGAL AEVAKKSLRP EDPSGKKAVL 251 300 ENSTTRP00000010435/1-647 DSSPFLSEAN AERIVRTLCK VRGAALKLGQ MLSIQDDAFI NPHLAKIFER ENSP00000355741/1-647 GSSPFLSEAN AERIVRTLCK VRGAALKLGQ MLSIQDDAFI NPHLAKIFER ENSBTAP00000029167/1-648 DSSPFLSEAN AERIVRTLCK VRGAALKLGQ MLSIQDDAFI NPHLAKIFDR bmy_16504T0/1-683 DSSPFLSEAN AERIVRTLCK VRGAALKLGQ MLSIQDDAFI NPHLAKIFER BACU001651/1-647 DSSPFLSEAN AERIVRTLCK VRGAALKLGQ MLSIQDDAFI NPHLAKIFER 301 350 ENSTTRP00000010435/1-647 VRQSADFMPL KQMTKTLNND LGPSWRDKLE YFEERPFAAA SIGQVHLARM ENSP00000355741/1-647 VRQSADFMPL KQMMKTLNND LGPNWRDKLE YFEERPFAAA SIGQVHLARM ENSBTAP00000029167/1-648 VRQSADFMPL KQMMKTLNND LGPNWRDKLE YFEERPFAAA SIGQVHLARL bmy_16504T0/1-683 VRQSADFMPL KQMMKTLNSD LGPNWRDKLE YFEERPFAAA SIGQVHLARM BACU001651/1-647 VRQSADFMPL KQMMKTLNSD LGPNWRDKLE YFEERPFAAA SIGQVHLARM 351 400 ENSTTRP00000010435/1-647 KGGREVAMKI QYPXXXXXXX XXXXXXXXXX XXXXXXXX-- ---------- ENSP00000355741/1-647 KGGREVAMKI QYPGVAQSIN SDVNNLMAVL NMSNMLPE-- ---------- ENSBTAP00000029167/1-648 KGGREVAMKI QYPGVAQSIN SDVNNLMTVL NMSNMLPE-- ---------- bmy_16504T0/1-683 KGGREVAMKI QYPGVAQSIS SDVNNLMAVL NMSNMLPEGL RLPLGKGRPV BACU001651/1-647 KGGREVAMKI QYPGVAQSIS SDVNNLMAVL NMSNMLPE-- ---------- 401 450 ENSTTRP00000010435/1-647 ---------- ---------- ----XXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000355741/1-647 ---------- ---------- ----GLFPEH LIDVLRRELA LECDYQREAA ENSBTAP00000029167/1-648 ---------- ---------- ----GLFPEH LIDVLRRELA LECDYQREAA bmy_16504T0/1-683 GGLWGPQGAS RGAPSPPDTL LPGLGLFPEH LIDVLRRELA LECDYQREAA BACU001651/1-647 ---------- ---------- ----GLFPEH LIDVLRRELA LECDYQREAA 451 500 ENSTTRP00000010435/1-647 CARRFRELLK DHPFFYVPEI VDELCSPHVL TTELVSGFPL DQAEGLSHEI ENSP00000355741/1-647 CARKFRDLLK GHPFFYVPEI VDELCSPHVL TTELVSGFPL DQAEGLSQEI ENSBTAP00000029167/1-648 CARRFRELLK DHPFFYVPEI VDELCSPHVL TTELVSGFPL DQAEGLSQEI bmy_16504T0/1-683 CARRFRELLK DHPFFYVPEI VDELCSPHVL TTELVSGFPL DQAEGLSQEI BACU001651/1-647 CARRFRELLK DHPFFYVPEI VDELCSPHVL TTELVSGFPL DQAEGLSQEI 501 550 ENSTTRP00000010435/1-647 RNEICYNILV LCLRELFEFH FMQTDPNWSN FFYDPQQHKV ALLDFGATRE ENSP00000355741/1-647 RNEICYNILV LCLRELFEFH FMQTDPNWSN FFYDPQQHKV ALLDFGATRE ENSBTAP00000029167/1-648 RNEICYNILV LCLRELFEFQ FMQTDPNWSN FFYDPELHKV ALLDFGATRE bmy_16504T0/1-683 RNEICYSILV LCLRELFEFH FMQTDPNWSN FFYDPQQHKV ALLDFGATRE BACU001651/1-647 RNEICHSILV LCLRELFEFH FMQTDPNWSN FFYDPQQHKV ALLDFGATRE 551 600 ENSTTRP00000010435/1-647 YDRSFTDLYI QIIRAAADRD REAVLKKSIE MKFLTGYEVK AMEDAHLDAI ENSP00000355741/1-647 YDRSFTDLYI QIIRAAADRD RETVRAKSIE MKFLTGYEVK VMEDAHLDAI ENSBTAP00000029167/1-648 FDRSFTDLYI QIIRAAANQD REAVLKKSIE MKFLTGYEVK AMEDAHLDAI bmy_16504T0/1-683 YDRSFTDLYI QIIRAAANRD REAVLKKSIE MKFLTGYEVK AMEDAHLDAI BACU001651/1-647 YDRSFTDLYI QIIRAAANRD REAVLKKSIE MKFLTGYEVK AMEDAHLDAI 601 650 ENSTTRP00000010435/1-647 LILGEAFASE EPFDFGTQST TEKIHNLIPV MLKHRLVPPP EETYSLHRKM ENSP00000355741/1-647 LILGEAFASD EPFDFGTQST TEKIHNLIPV MLRHRLVPPP EETYSLHRKM ENSBTAP00000029167/1-648 LILGEAFASE EPFDFGTQST TEKIHNLIPI MLKHRLVPPP EETYSLHRKM bmy_16504T0/1-683 LTLGEAFASE EPFDFGTQST TEKIHSLIPI MLKHRLVPPP EETYSLHRKM BACU001651/1-647 LTLGEAFASE EPFDFGTQST TEKIHSLIPI MLKHRLVPPP EETYSLHRKM 651 700 ENSTTRP00000010435/1-647 GGSFLICSKL KARFPCKAMF EEAYSNYRRR QAEQQ ENSP00000355741/1-647 GGSFLICSKL KARFPCKAMF EEAYSNYCKR QAQQ- ENSBTAP00000029167/1-648 GGSFLICSKL KARFPCKAMF EEAYSNYCRR QAEQQ bmy_16504T0/1-683 GGSFLICSKL KARFPCKAMF EEAYSNYRRR QAEQQ BACU001651/1-647 GGSFLICSKL KARFPCKAMF EEAYSNYCRR QAEQQ