KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:38:04 2014  Check: 00 ..

 Name: ENSTTRP00000009173/1-230  Len:    282  Check:  2983  Weight:  1.00
 Name: ENSP00000217260/1-234     Len:    282  Check:  2840  Weight:  1.00
 Name: bmy_08912T0/1-277         Len:    282  Check:  6568  Weight:  1.00
 Name: ENSBTAP00000029170/1-205  Len:    282  Check:  2973  Weight:  1.00

//


                          1                                                   50
ENSTTRP00000009173/1-230  MRAPLCLLLL VAHAVDMLPL NRRKK----- -------QVG TGLGGNCTGC 
ENSP00000217260/1-234     MRAPLCLLLL VAHAVDMLAL NRRKK----- -------QVG TGLGGNCTGC 
bmy_08912T0/1-277         --MSLGQEAI LDHCLSAHSQ NSQERWSNCP SLDELSGPVG TGLGGNCTGC 
ENSBTAP00000029170/1-205  ---------- ---------- ---------- --------VG TGPGGNCTGC 


                          51                                                 100
ENSTTRP00000009173/1-230  VICSEENGCS TCQQRLFLFI RREGIRQYGK CVHDCPPGYF GVRGQEVNRC 
ENSP00000217260/1-234     IICSEENGCS TCQQRLFLFI RREGIRQYGK CLHDCPPGYF GIRGQEVNRC 
bmy_08912T0/1-277         VICSEENGCS TCQQRLFLFI RREGIRQYGK CVHDCPPGYF GVRGQEVNRC 
ENSBTAP00000029170/1-205  VICSEENGCS TCQQRLFLFI SREGIRQYGK CVHDCPPGYF GVRGQEVNRC 


                          101                                                150
ENSTTRP00000009173/1-230  RKCGATCESC FSQDFCIQCK RQFYLHKGKC LPTCPPGTAA QQSTRECQXX 
ENSP00000217260/1-234     KKCGATCESC FSQDFCIRCK RQFYLYKGKC LPTCPPGTLA HQNTRECQGE 
bmy_08912T0/1-277         KKCGATCESC FSQDFCIQCK RRFYLYKGKC LPTCPPGTAA QQSTRECQGE 
ENSBTAP00000029170/1-205  KKCGATCESC FSQDFCIQCK RRFYLYKGKC LPTCPPGTAA QQSTRECQEE 


                          151                                                200
ENSTTRP00000009173/1-230  ---------- ---------- ---------- -----XXXXX XXXXXXXXXX 
ENSP00000217260/1-234     ---------- ---------- ---------- -----CELGP WGGWSPCTHN 
bmy_08912T0/1-277         WGHPHPALSP PSLEQGLVRG VRRPERNHRR MSREECELGP WGSWSPCTHN 
ENSBTAP00000029170/1-205  ---------- ---------- ---------- -----CELNP WGSWSPCTHN 


                          201                                                250
ENSTTRP00000009173/1-230  XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXSNPN 
ENSP00000217260/1-234     GKTCGSAWGL ESRVREAGRA GHEEAATCQV LSESRKCPIQ RPCPGERSPG 
bmy_08912T0/1-277         GKTCGSAWGL ETRVREASRA GREEAATCQV LSESRQCPIR RPCPGESNPS 
ENSBTAP00000029170/1-205  GKTCGSAWGL ETRVREAGRA GREEAATCQV LSESRKCPIR RPCPGERNPN 


                          251                                                300
ENSTTRP00000009173/1-230  QKKSGKDRRP RKDRKLDGRG EGRPRQR--- -- 
ENSP00000217260/1-234     QKKGRKDRRP RKDRKLDRRL DVRPRQPGLQ P- 
bmy_08912T0/1-277         QKKSGKDRRL RKDRKLDGRG EERPRPA--- PA 
ENSBTAP00000029170/1-205  RKKGQRERRP RKDRKLDGRG DGRPRPA--- P-