KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:38:06 2014 Check: 00 .. Name: ENSP00000264952/1-553 Len: 553 Check: 2367 Weight: 1.00 Name: bmy_10658T0/1-364 Len: 553 Check: 7729 Weight: 1.00 Name: ENSBTAP00000029175/1-552 Len: 553 Check: 2653 Weight: 1.00 Name: BACU012763/1-546 Len: 553 Check: 4442 Weight: 1.00 Name: ENSTTRP00000011413/1-551 Len: 553 Check: 7243 Weight: 1.00 // 1 50 ENSP00000264952/1-553 MVDMGALDNL IANTAYLQAR KPSDCDSKEL QRRRRSLALP GLQGCAELRQ bmy_10658T0/1-364 MVDMGGLDNL IANTAYVQAR KSLDADSKEL QRRRRTLMLP RPQSCEQLRQ ENSBTAP00000029175/1-552 MVDMGGLDNL IANTAYLQAR KSSDADSKEL QRRRRSLMLP GPQSCEQLRQ BACU012763/1-546 MVDMGGLDNL IANTAYLQAR KSLDADSKEL QRRRRTLMLP GPQSCEQLRQ ENSTTRP00000011413/1-551 MVDMGGLDNL IANSAYLQAR KSSDADSKEL QRRRRTLMLP GPQSCEQLRQ 51 100 ENSP00000264952/1-553 KLSLNFHSLC EQQPIGRRLF RDFLATVPTF RKAATFLEDV QNWELAEEGP bmy_10658T0/1-364 APPNDFHGLC EQQPIGRRLF RGFLAMVPAY QEAVGFLEEV QSWELAEEGP ENSBTAP00000029175/1-552 ALATDFHSLC EQQPIGRRLF RDFLATVPAY QEARGFLEEV QSWELAEEGP BACU012763/1-546 APPNDFHSLC EQQPIGRRLF RVFLPTVPAY QEAVGFLEEV QSWELAEEGP ENSTTRP00000011413/1-551 APPNDFHSLC EQQPIGRRLF RDFLATVPAY QEAVGFLEEV QSWELAEEGP 101 150 ENSP00000264952/1-553 TKDSALQGLV ATCASAPAPG NPQPFLSQAV ATKCQAATTE EERVAAVTLA bmy_10658T0/1-364 AKGSTLQGLV AICAAS--PG RPHPFLSPAL VTKCQAATTE DERASLVELA ENSBTAP00000029175/1-552 AKGSALQGLV TTCAAAPVPG RPHPFFSPAL VTKCQAATTD DDRASLVELA BACU012763/1-546 AKGSTLQGLV ATCAAS--PG RPHPFLSPAL VTKCQAATTE EERASLVELA ENSTTRP00000011413/1-551 AKGSTLQGLV ATCAAS--PG HPHPFLSPAL VTKCQAATTE EERASLVELA 151 200 ENSP00000264952/1-553 KAEAMAFLQE QPFKDFVTSA FYDKFLQWKL FEMQPVSDKY FTEFRVLGKG bmy_10658T0/1-364 KAEAMAFLQD QPFLEFLASP FYDKFLQWKV FEMQPVSDKY FEEFRVLGKG ENSBTAP00000029175/1-552 KAEVMAFLQD QPFREFLASP FYDKFLQWKV FEMQPVSDKY FEEFRVLGKG BACU012763/1-546 KDEAVAFLQD QPFLEFLASP FDDKFLQWKV FEMQPVSDKY FEEFQVLRKG ENSTTRP00000011413/1-551 KAEAMAFLQD QPFLEFLASP FYEKFLQWKV FEMQPVSDKY FEEFRVLGKG 201 250 ENSP00000264952/1-553 GFGEVCAVQV KNTGKMYACK KLDKKRLKKK GGEKMALLEK EILEKVSSPF bmy_10658T0/1-364 GFGEVCAVQV KNTGKMYACK KLGKKRLKKK NGEKMALLEK EILERASSPF ENSBTAP00000029175/1-552 GFGEVCAVQV KNTGKMYACK KLDKKRLKKK NGEKMALLEK EILERVSSPF BACU012763/1-546 GFGEVCAVQV KNTGKMYACK KLGKKRLKKK NGEKMALLEK EILERVSSPF ENSTTRP00000011413/1-551 GFGEVCAVQV KNTGKMYACK KLDKKRLKKK NGEKMALLEK EILERISSPF 251 300 ENSP00000264952/1-553 IVSLAYAFES KTHLCLVMSL MNGGDLKFHI YNVGTRGLDM SRVIFYSAQI bmy_10658T0/1-364 IVSLAYAFES KSHLCLVMSL MNGGDLKFHI YSVGERGPDM SRVVFYSAQM ENSBTAP00000029175/1-552 IVSLAYAFES KSHLCLVMSL MNGGDLKFHI YSVGEPGLDM SRVIFYSAQI BACU012763/1-546 IVSLAYAFES KCHLCLVMSL MNGGDLKFHI YSVGEQGPDM SRVVFYSAQM ENSTTRP00000011413/1-551 IVSLAYAFES KSHLCLVMSL MNGGDLKFHI YSVGERGLDM SRVVFYSAQM 301 350 ENSP00000264952/1-553 ACGMLHLHEL GIVYRDMKPE NVLLDDLGNC RLSDLGLAVE MKGGKPITQR bmy_10658T0/1-364 TCGVLHLHSL SIVYRDLKPE NVLLDDLGNC RLSDLGLAVE IQDGKPIVQR ENSBTAP00000029175/1-552 TCGVLHLHSL GIVYRDMKPE NVLLDDLGNC RLSDLGLAVQ IQDGKPITQR BACU012763/1-546 TCDVLHLHSL SIVYRDLKPK NVLLDDLGNC RLSDLGLAVE IQDGKPIIQR ENSTTRP00000011413/1-551 TCGVLHLHSL SIVYRDLKPE NVLLDDLGNC RLSDLGLAVE IRDGKPITQR 351 400 ENSP00000264952/1-553 AGTNGYMAPE ILMEKVSYSY PVDWFAMGCS IYEMVAGRTP FKDYKEKVSK bmy_10658T0/1-364 ---------- ---------- ---------- ----VSG--- ---------- ENSBTAP00000029175/1-552 AGTNGYMAPE ILMEKASYSY PVDWFAMGCS IYEMVAGRTP FRDYKEKVSK BACU012763/1-546 AGTNGYMAPE ILMEKASYSY PVDWFAMGCS IYEMVAGRTP FKDYKEKVSK ENSTTRP00000011413/1-551 AGTNGYMAPE ILMEKASYSY PVDWFAMGCS IYEMVAGRTP FKDYKEKVSK 401 450 ENSP00000264952/1-553 EDLKQRTLQD EVKFQHDNFT EEAKDICRLF LAKKPEQRLG SREKSDDPRK bmy_10658T0/1-364 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029175/1-552 EDLKQRTLKE EVRFQHSNFT EEAKDICRLF LAKTPEQRLG SREKSDDPRK BACU012763/1-546 EDLKQRTLKE EVRFQHDNFT EEAKDICRLF LAKTPEQRLG SREKSDDPR- ENSTTRP00000011413/1-551 EDLKQRTLKE EVRFQHDNFT EEAKDICRLF LAKTPEQRLG SREKSDDPRK 451 500 ENSP00000264952/1-553 HHFFKTINFP RLEAGLIEPP FVPDPSVVYA KDIAEIDDFS EVRGVEFDDK bmy_10658T0/1-364 ---------- --------SP WAQSPYVV-- ---------- ---------- ENSBTAP00000029175/1-552 HHFFKTINFP RLEAGLVEPP FVPDPSVVYA KDINEIDDFS EVRGVEFDDN BACU012763/1-546 ----KTINFP RLEAGLVEPP FVLDPSVVYA KDIDEIEDFS EVRGVEFDDK ENSTTRP00000011413/1-551 HHFFKTINFP RLEAGLIEPP FVPDPSVVYA KDIGEIEDFS EVRGVEFDDK 501 550 ENSP00000264952/1-553 DKQFFKNFAT GAVPIAWQEE IIETGLFEEL NDPNRPTGCE EGNSSKSGVC bmy_10658T0/1-364 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029175/1-552 DKQFFQRFAT GAVPIAWQEE IIETGLFAEL NDPNRPAGCG EG-SSRSGVC BACU012763/1-546 DMQFFQRFAT AAVPVAWQEE IIETGLFAKL NDPNRPAGCG EGNSSKSGIC ENSTTRP00000011413/1-551 DTQFFQRFAT GAVPIAWQEE IIETGLFAEL NDPNRPAGCG EGNSSKSGIC 551 600 ENSP00000264952/1-553 LLL bmy_10658T0/1-364 ILP ENSBTAP00000029175/1-552 LLL BACU012763/1-546 LLL ENSTTRP00000011413/1-551 LLL