KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:38:07 2014 Check: 00 .. Name: BACU003858/1-398 Len: 742 Check: 8876 Weight: 1.00 Name: ENSP00000356981/1-565 Len: 742 Check: 1376 Weight: 1.00 Name: ENSBTAP00000029184/1-565 Len: 742 Check: 25 Weight: 1.00 Name: bmy_06339T0/1-722 Len: 742 Check: 3336 Weight: 1.00 Name: ENSTTRP00000008720/1-562 Len: 742 Check: 3809 Weight: 1.00 // 1 50 BACU003858/1-398 ---------- ---------- ---------- ---------- ---------- ENSP00000356981/1-565 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029184/1-565 ---------- ---------- ---------- ---------- ---------- bmy_06339T0/1-722 MADEATRRVV SEIPVLKTNA GPRDRELWVQ RLKEEYQSLI RYVENNKNAD ENSTTRP00000008720/1-562 ---------- ---------- ---------- ---------- ---------- 51 100 BACU003858/1-398 ---------- ---------- ---------- ---------- ---------- ENSP00000356981/1-565 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029184/1-565 ---------- ---------- ---------- ---------- ---------- bmy_06339T0/1-722 NDWFRLESNK EGTRWFGKCW YIHDLLKYEF DIEFDIPITY PTTAPEIAVP ENSTTRP00000008720/1-562 ---------- ---------- ---------- ---------- ---------- 101 150 BACU003858/1-398 ---------- ---------- ---------- ---------- --------MP ENSP00000356981/1-565 ---------- ---------- ---------- ---------- --------MP ENSBTAP00000029184/1-565 ---------- ---------- ---------- ---------- --------MP bmy_06339T0/1-722 ELDGKTAKMY RGGKVCLTDH FKPLWARNVP KFGLAHLMAL GVQPVVSTMP ENSTTRP00000008720/1-562 ---------- ---------- ---------- ---------- --------MP 151 200 BACU003858/1-398 QASEHRLGRT REPPLNVQHR VGSKLPFASR ARSKERRNPA PGPNPMLRPL ENSP00000356981/1-565 QASEHRLGRT REPPVNIQPR VGSKLPFAPR ARSKERRNPA SGPNPMLRPL ENSBTAP00000029184/1-565 QASEHRLGRT REPPLNIQPR VGSKLPFAPR ARSKERRNPA PGPNPMLRPL bmy_06339T0/1-722 QASEHRLGRT REPPLNVQHR VGSKLPFAPR ARSKERRNPA PGPNPMLRPL ENSTTRP00000008720/1-562 QASEHRLGRT REPPLNVQPR VGSKLPFAPR ARSKERRNPG PGPNPVLRPL 201 250 BACU003858/1-398 PPRPAPPEER LKKLELGRGR TSGPRPRGPL RADHGVPLPG SPPPTVALPL ENSP00000356981/1-565 PPRPGLPDER LKKLELGRGR TSGPRPRGPL RADHGVPLPG SPPPTVALPL ENSBTAP00000029184/1-565 PPRPGPPEER LKKLELGRGR TSGPRPSGPL RADHGVPLPG SPPPTVALPL bmy_06339T0/1-722 PPRPAPPEER LKKLELGRGR TSGPRPRGPL RADHGVPLPG SPPPTVALPL ENSTTRP00000008720/1-562 PPRPGPPEER LKKLELGRGR TSGPRPRGPL RADHGVPLPG SPPPTVALPL 251 300 BACU003858/1-398 PSRTNLARSK SVSSGDLRPM GIALGGHRGT GELGAALSRL ALRPEPPTLR ENSP00000356981/1-565 PSRTNLARSK SVSSGDLRPM GIALGGHRGT GELGAALSRL ALRPEPPTLR ENSBTAP00000029184/1-565 PSRTNLARSK SVSSGDLRPM GIALGGHRGT GELGAALSRL ALRPEPPPLR bmy_06339T0/1-722 PSRTNLARSK SVSSGDLRPM GIALGGHRGT GELGAALSRL ALRPEPPTLR ENSTTRP00000008720/1-562 PSRTNLARSK SVSSGDLRPM GIALGGHRGT GELGAALSRL ALRPEPPTLR 301 350 BACU003858/1-398 RSTSLRRLGG FPGPPTLLSI RTEPPTSHGS FHVISARPSE PFYSNDKMAH ENSP00000356981/1-565 RSTSLRRLGG FPGPPTLFSI RTEPPASHGS FHMISARSSE PFYSDDKMAH ENSBTAP00000029184/1-565 RSTSLRRLGG FPGPPTLFSI RTEPPTPHGS FHVISARPSE PFYSDDKMAH bmy_06339T0/1-722 RSTSLRRLGG FPGPPTLLSI RTEPPTSHGS FHVISARPSE PFYSNDKM-- ENSTTRP00000008720/1-562 RSTSLRRLGG FSGPPTLFSI RTEPPTSHGS FHVISARPSE PFYADDKMAH 351 400 BACU003858/1-398 HTLLLGSGHV GLRNLGNTCF LNAVLQCLSS TRPLRDFCLR RDFRQEVPGG ENSP00000356981/1-565 HTLLLGSGHV GLRNLGNTCF LNAVLQCLSS TRPLRDFCLR RDFRQEVPGG ENSBTAP00000029184/1-565 HTLLLGSGHV GLRNLGNTCF LNAVLQCLSS TRPLRDFCLR RDFRQEVPGG bmy_06339T0/1-722 ---------- --------CF LNAVLQCLSS TRPLRDFCLR RDFRQEVPGG ENSTTRP00000008720/1-562 HTLLLGSGHV GLRNLGNTXX XXAVLQC-SS TRPL-DF-LR RDFRQEVPGG 401 450 BACU003858/1-398 GRAQELTEAF ADVIGALWHP DSCEAVNPTR FRAVFQKYVP SFSGYSQQDA ENSP00000356981/1-565 GRAQELTEAF ADVIGALWHP DSCEAVNPTR FRAVFQKYVP SFSGYSQQDA ENSBTAP00000029184/1-565 GRAQELTEAF ADVIGALWHP DSCEAVNPTR FRAVFQKYVP SFSGYSQQDA bmy_06339T0/1-722 GRAQELTEAF ADVIGALWHP DSCEAVNPTR FRAVFQKYVP SFSGYSQQDA ENSTTRP00000008720/1-562 GRAQELTEAF ADVIGALWHP DSCEAVNPTR FRAVFQKYVP SFSGYSQQDA 451 500 BACU003858/1-398 QEFLKLLMER LHLEINRRGR RAPPVLANSP APSQPRRGGA LLEEPELSDD ENSP00000356981/1-565 QEFLKLLMER LHLEINRRGR RAPPILANGP VPSPPRRGGA LLEEPELSDD ENSBTAP00000029184/1-565 QEFLKLLMER LHLEINRRGR RAPPILASSP APHPPRLGGA LLEEPELSDD bmy_06339T0/1-722 QEFLKLLMER LHLEINRRGR RAPPVLANSP APSQPRRGGA LLEEPELSDD ENSTTRP00000008720/1-562 QEFLKLLMER LHLEINRRDR RAPPVLANSP APSQPRRGGA LLEEPELSDD 501 550 BACU003858/1-398 DRANLMWKRY LEREDSKIV- ---------- ---------- ---------- ENSP00000356981/1-565 DRANLMWKRY LEREDSKIVD LFVGQLKSCL KCQACGYRST TFEVFCDLSL ENSBTAP00000029184/1-565 DRANLMWKRY LEREDSKIVD LFVGQLKSCL KCQACGYRST TFEVFCDLSL bmy_06339T0/1-722 DRANLMWKRY LEREDSKIVD LFVGQLKSCL KCQACGYRST TFEVFCDLSL ENSTTRP00000008720/1-562 DRANLMWKRY LEREDSKIVD LFVGQLKSCL KCQSCGYRST TFEVFCDLSL 551 600 BACU003858/1-398 ---------- ---------- ---------- -GPV--CG-- ---------- ENSP00000356981/1-565 PIPKKGFAGG KVSLRDCFNL FTKEEELESE NAPV--CDRC RQKTRSTKKL ENSBTAP00000029184/1-565 PIPKKGFAGG KVSLRDCFNL FTKEEELESE NAPV--CDRC RQKTRSTKKL bmy_06339T0/1-722 PIPKKGFAGG KVSLRDCFSL FTKEEELESE NAPVCVCDQC RQKTRSTKKL ENSTTRP00000008720/1-562 PIPKKGFAGG KVSLRDCFSL FTKEEELESE NAPV--CDQC RQKTRSTKKL 601 650 BACU003858/1-398 ---------- ---------- ---------- ---------- ---------- ENSP00000356981/1-565 TVQRFPRILV LH-------- ---------- ---------L NRFSASRGSI ENSBTAP00000029184/1-565 TVQRFPRILV LH-------- ---------- ---------L NRFSASRGSI bmy_06339T0/1-722 TVQRFPRILV LRRGVDNIHF LSPPQRHSAS QILLNQSLDL NRFSASRGSI ENSTTRP00000008720/1-562 TVQRFPRILV LR-------- ---------- ---------I NRFSASRGSI 651 700 BACU003858/1-398 ---------P VEKLS----- ---------Q VPGL------ ---------- ENSP00000356981/1-565 KKSSVGVDFP LQRLSLGDFA SDKAGSPVYQ LYALCNHSGS VHYGHYTALC ENSBTAP00000029184/1-565 KKSSVGVDFP LQRLSLGDFA SDKAGSPVYQ LYALCNHSGS VHYGHYTALC bmy_06339T0/1-722 KKSSVGVDFP LQRLSLGDFA SDKAGSPVYQ LYALCNHSGS VHYGHYTALC ENSTTRP00000008720/1-562 KKSSVGVDFP LQRLSLGDFA SDKAGSPVYQ LYALCNHSGS VHYGHYTALC 701 750 BACU003858/1-398 -----WVSLH DLR------- ------GFL- ---------- -- ENSP00000356981/1-565 RCQTGWHVYN DSRVSPVSEN QVASSEGYVL FYQLMQEPPR CL ENSBTAP00000029184/1-565 RCQTGWHVYN DSRVSPVSEN QVASSEGYVL FYQLMQEPPR CL bmy_06339T0/1-722 RCQTGWHVYN DSRVSPVSEN QVASSEGYVL FYQLMQEPPR CL ENSTTRP00000008720/1-562 RCQTGWHVYN DSRVSPVSEN QVASSEGYVL FYQLMQEPPR CL