KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:38:14 2014 Check: 00 .. Name: ENSTTRP00000013307/1-917 Len: 984 Check: 3653 Weight: 1.00 Name: bmy_18632T0/1-668 Len: 984 Check: 821 Weight: 1.00 Name: ENSP00000359552/1-984 Len: 984 Check: 4284 Weight: 1.00 Name: BACU009547/1-983 Len: 984 Check: 5797 Weight: 1.00 Name: ENSBTAP00000029201/1-981 Len: 984 Check: 2977 Weight: 1.00 // 1 50 ENSTTRP00000013307/1-917 MASNPERGEI LLTELQGDSR SLPFSENVSA VQKLDFSDTM VQQKLDDIKD bmy_18632T0/1-668 MASNPERGEI LLTELQGDSR SLPFSENVSA VQKLDFSDTM VQQKLDDIKD ENSP00000359552/1-984 MASNPERGEI LLTELQGDSR SLPFSENVSA VQKLDFSDTM VQQKLDDIKD BACU009547/1-983 MASNPERGEI LLTELQGDSR SLPFYENVSA VQKLDFSDTM VQQKLDDIKD ENSBTAP00000029201/1-981 MASNPERGEI LLTELQGDSR SLPFSENVSA VQKLDFSDTM VQQKLDDIKD 51 100 ENSTTRP00000013307/1-917 RIKREIRKEL KIKEGAENLR KVTTDKKSLA YVDNILKKSN KKLDELHHKL bmy_18632T0/1-668 RIKREIRKEL KIKEGAENLR KVTTDKKSLA YVDNILKKSN KKLEELHHKL ENSP00000359552/1-984 RIKREIRKEL KIKEGAENLR KVTTDKKSLA YVDNILKKSN KKLEELHHKL BACU009547/1-983 RIKREIRKEL KIKEGAENLR KVTTDKKSLA YVDNILKKSN KKLEELHHKL ENSBTAP00000029201/1-981 RIKREIRKEL KIKEGAENLR KVTTDKKSLA YVDNILKKSN KKLEELHHKL 101 150 ENSTTRP00000013307/1-917 QELNAHIVVS DPEDVTDCPR TPDTPSSDPR CSTSNNRLMA LQKQLDIELK bmy_18632T0/1-668 QELNAHIVVS DPEDVTDCPR TPDTPSSDPR CSTSNNRLMA LQKQLDIEL- ENSP00000359552/1-984 QELNAHIVVS DPEDITDCPR TPDTPNNDPR CSTSNNRLKA LQKQLDIELK BACU009547/1-983 QELNAHIVVS DPEDVTDCPR TPDTPSSDPR CSTSNNRLMA LQKQLDIELK ENSBTAP00000029201/1-981 QELNAHIVVS DPEDVTDCPR TPDTPSSDSR CSTSNNRLMA LQKQLDIELK 151 200 ENSTTRP00000013307/1-917 VKQGAENMIQ MYSNGSSKDR KLHGTAQQLL QDSKTKIEVI RMQILQAVQT bmy_18632T0/1-668 ---------- -------KDR KLHGTAQQLL QDSKTKIEVI RMQILQAVQT ENSP00000359552/1-984 VKQGAENMIQ MYSNGSSKDR KLHGTAQQLL QDSKTKIEVI RMQILQAVQT BACU009547/1-983 VKQGAENMIQ MYSNGSSKDR KLHGTAQQLL QDSKTKIEVI RMQILQAVQT ENSBTAP00000029201/1-981 VKQGAENMIQ MYSNGSSKDR KLHGTAQQLL QDSKTKIEVI RMQILQAVQT 201 250 ENSTTRP00000013307/1-917 NELAFDNAKP VISPLELRME ELRHHFRIEF AVAEGAKNVM KLLGSGKVTD bmy_18632T0/1-668 NELAFDNAKP VISPLELRME ELRHHFRIEF AVAEGAKNVM KLLGSGK--- ENSP00000359552/1-984 NELAFDNAKP VISPLELRME ELRHHFRIEF AVAEGAKNVM KLLGSGKVTD BACU009547/1-983 NELAFDNAKP VISPLELRME ELRHHFRIEF AVAEGAKNVM KLLGSGKVTD ENSBTAP00000029201/1-981 NELAFDNAKP VISPLELRME ELRHHFRIEF AVAEGAKNVM KLLGSGKVTD 251 300 ENSTTRP00000013307/1-917 RKALSE---- ---------- ---------- ---------- ---------- bmy_18632T0/1-668 ------AQAR FNESSQKLDL LKYSLEQRLN ELPKNHPKSS IIIEELSLV- ENSP00000359552/1-984 RKALSEAQAR FNESSQKLDL LKYSLEQRLN EVPKNHPKSR IIIEELSLVA BACU009547/1-983 RKALSEAQAR FNESSQKLDL LKYSLEQRLN ELPKNHPKSS IIIEELSLV- ENSBTAP00000029201/1-981 RKALSEAQAR FNESSQKLDL LKYSLEQRLN ELPKNHPKSS IIIEELSLV- 301 350 ENSTTRP00000013307/1-917 ---------- ---------- ---PAALTGT LEVRLMGCQD ILENVPGRSK bmy_18632T0/1-668 ASPTLSPRQS MISTQNQYST LSKPAALT-- ---------- ---------- ENSP00000359552/1-984 ASPTLSPRQS MISTQNQYST LSKPAALTGT LEVRLMGCQD ILENVPGRSK BACU009547/1-983 ASPTLSPRQS MISTQNQYST LSKPAALTGT LEVRLMGCQD ILENVPGRSK ENSBTAP00000029201/1-981 ASPTLSPRQS MISTQNQYST LSKPAALTGT LEVRLMGCQD ILENVPGRSK 351 400 ENSTTRP00000013307/1-917 AASVALPGWS PSETRSSFMS RTSKSKSGSS RNLLKTDDLS NDVCAVLKLD bmy_18632T0/1-668 ---------- ---------- ---------- ---------- DDVCAVLKLD ENSP00000359552/1-984 ATSVALPGWS PSETRSSFMS RTSKSKSGSS RNLLKTDDLS NDVCAVLKLD BACU009547/1-983 AASVALPGWS PSETRSSFMS RTSKSKSGSS RNLLKTDDLS NDVCAVLKLD ENSBTAP00000029201/1-981 AASVALPGWS PSETRSSFMS RTSKSKSGSS RNLLKTDDLS NDVCAVLKLD 401 450 ENSTTRP00000013307/1-917 NTVVGQTSWK PISNQSWDQK FTLELDRSRE LEISVYWRDW RSLCAVKFLR bmy_18632T0/1-668 NTVVGQTSWK PISNQSWDQK FTLELDR--- ---------- ---------- ENSP00000359552/1-984 NTVVGQTSWK PISNQSWDQK FTLELDRSRE LEISVYWRDW RSLCAVKFLR BACU009547/1-983 NTVVGQTSWK PISNQSWDQK FTLELDRSRE LEISVYWRDW RSLCAVKFLR ENSBTAP00000029201/1-981 NTVVGQTSWK PISNQSWDQK FTLELDRSRE LEISVYWRDW RSLCAVKFLR 451 500 ENSTTRP00000013307/1-917 LEDFLDNQRH GMCLYLEPQG TLFAEVTFFN PVIERRPKLQ RQKKIFSKQQ bmy_18632T0/1-668 ---------- ---------- -----VTFFN PVIERRPKLQ RQKKIFSKQQ ENSP00000359552/1-984 LEDFLDNQRH GMCLYLEPQG TLFAEVTFFN PVIERRPKLQ RQKKIFSKQQ BACU009547/1-983 LEDFLDNQRH GMCLYLEPQG TLFAEVTFFN PVIERRPKLQ RQKKIFSKQQ ENSBTAP00000029201/1-981 LEDFLDNQRH GMCLYLEPQG TLFAEVTFFN PVIERRPKLQ RQKKIFSKQQ 501 550 ENSTTRP00000013307/1-917 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXVH bmy_18632T0/1-668 GKTFLRAPQM NINIATWGRL VRRAIPTVNH SGTFSPQAPV PATVPVVDVH ENSP00000359552/1-984 GKTFLRAPQM NINIATWGRL VRRAIPTVNH SGTFSPQAPV PTTVPVVDVR BACU009547/1-983 GKTFLRAPQM NINIATWGRL VRRAIPTVNH SGAFSPQAPV PATVPVVDVH ENSBTAP00000029201/1-981 GKTFLRAPQM NINIATWGRL VRRAIPTVNH SGTFSPQAPV PATVPVVDVH 551 600 ENSTTRP00000013307/1-917 IPELAPPASD SAVTKLDFDL EPEPPLAPPR DSSLGEIDES AELRDLDTQG bmy_18632T0/1-668 IPELAPPASD SAVTKLDFDL EPEPPLAPPR DSSLGEIDES AELRDLDTQG ENSP00000359552/1-984 IPQLAPPASD STVTKLDFDL EPEPPPAPPR ASSLGEIDES SELRVLDIPG BACU009547/1-983 IPELAPPASD SAVTKLDFDL EPEPPLAPPR DSSLGEIDES AELRDLDTQG ENSBTAP00000029201/1-981 IPELAPPASD STVTKLDFDL EPEPPPAPPR DSSLGEIDES A--RDLDTPG 601 650 ENSTTRP00000013307/1-917 QVSETVFDTE NDRNRLLPKS QSEYEPDIPQ SGLEYSDIHE LEDRRSQQMF bmy_18632T0/1-668 QVSETVFDTE NDRNRLLPKP QSEYEPDIPQ SGLEYSGIHE LEDRRSQQMF ENSP00000359552/1-984 QDSETVFDIQ NDRNSILPKS QSEYKPDTPQ SGLEYSGIQE LEDRRSQQRF BACU009547/1-983 QVSETVFDTE NDRNRLLPKS QSEYEPDIPQ SGLEYSGIDE LEDRRSQQMF ENSBTAP00000029201/1-981 QDSETVFDTE NDRNRILPKS QSEYEPDIPQ SGLEYSGIHE LEDRRSQQMF 651 700 ENSTTRP00000013307/1-917 QFNLQDFRCC AVLGRGHFGK VLLAEYKHTN EMFAIKALKK GDIVARDEVD bmy_18632T0/1-668 QFNLQDFRCC AVLGRGHFGK VLLAEYKHTN EMFAIKALKK GDIVARDEVD ENSP00000359552/1-984 QFNLQDFRCC AVLGRGHFGK VLLAEYKNTN EMFAIKALKK GDIVARDEVD BACU009547/1-983 QFNLQDFRCC AVLGRGHFGK VLLAEYKHTN EMFAIKALKK GDIVARDEVD ENSBTAP00000029201/1-981 QFSLQDFRCC AVLGRGHFGK VLLAEYKHTN EMFAIKALKK GDIVARDEVD 701 750 ENSTTRP00000013307/1-917 SLMCEKRIFE TVNSVRHPFL VNLFACFQTK EHVCFVMEYA AGGDLMMHIH bmy_18632T0/1-668 R--------- ---------- ---------- ---------- ---------- ENSP00000359552/1-984 SLMCEKRIFE TVNSVRHPFL VNLFACFQTK EHVCFVMEYA AGGDLMMHIH BACU009547/1-983 SLMCEKRIFE TVNSVRHPFL VNLFACFQTK EHVCFVMEYA AGGDLMMHIH ENSBTAP00000029201/1-981 SLMCEKRIFE TVNSVRHPFL VNLFACFQTK EHVCFVMEYA AGGDLMMHIH 751 800 ENSTTRP00000013307/1-917 TDVFSEPRAV FYAACVVLGL QYLHEHKIVY RDLKLDNLLL DTEGFVKIAD bmy_18632T0/1-668 ---------- FYAACVVLGL QYLHEHKIVY RDLKLDNLLL DTEGFVKIAD ENSP00000359552/1-984 TDVFSEPRAV FYAACVVLGL QYLHEHKIVY RDLKLDNLLL DTEGFVKIAD BACU009547/1-983 TDVFSEPRAV FYAACVVLGL QYLHEHKIVY RDLKLDNLLL DTEGFVKIAD ENSBTAP00000029201/1-981 TDVFSEPRAV FYAACVVLGL QYLHEHKIVY RDLKLDNLLL DTEGFVKIAD 801 850 ENSTTRP00000013307/1-917 FGLCKEGMGF GDRTSTFCGT PEFLAPEVLT ETSYTRAVDW WGLGVLIYEM bmy_18632T0/1-668 FGLCKEDM-- ---------- -----SDKIS SSALGR---- WVLKSF---- ENSP00000359552/1-984 FGLCKEGMGY GDRTSTFCGT PEFLAPEVLT ETSYTRAVDW WGLGVLIYEM BACU009547/1-983 FGLCKEGMGF GDRTSTFCGT PEFLAPEVLT ETSYTRAVDW WGLGVLIYEM ENSBTAP00000029201/1-981 FGLCKEGMGY GDRTSTFCGT PEFLAPEVLT ETSYTRAVDW WGLGVLIYEM 851 900 ENSTTRP00000013307/1-917 LVGESPFPGD DEEEVFDSIV NDEVRYPRFL STEAISIMRR LLRRNPERRL bmy_18632T0/1-668 --SQSPFPGD DEEEVFDSIV NDEVRYPRFL STEAISIMRR VE-------- ENSP00000359552/1-984 LVGESPFPGD DEEEVFDSIV NDEVRYPRFL STEAISIMRR LLRRNPERRL BACU009547/1-983 LVGESPFPGD DEEEVFDSIV NDEVRYPRFL STEAISIMRR LLRRNPERRL ENSBTAP00000029201/1-981 LVGESPFPGD DEEEVFDSIV NDEVRYPRFL STEAISIMRR LLRRNPERRL 901 950 ENSTTRP00000013307/1-917 GAGEKDAEDV KKHPFFRLID WSALMDKKVK PPFVPTIRGR EDVSNFDDEF bmy_18632T0/1-668 ---------- ---------- ---------- ---------- ---------- ENSP00000359552/1-984 GASEKDAEDV KKHPFFRLID WSALMDKKVK PPFIPTIRGR EDVSNFDDEF BACU009547/1-983 GAGEKDAEDV KKHPFFRLID WSALMDKKVK PPFVPTIRGR EDVSNFDDEF ENSBTAP00000029201/1-981 GAGEKDAEDV KKHPFFRLID WSALMDKKVK PPFVPTIRGR EDVSNFDDEF 951 1000 ENSTTRP00000013307/1-917 TSEAPILTPP REPRILSEEE QEMFRDFDYI ADWC bmy_18632T0/1-668 ---------- ---------- ---------- ---- ENSP00000359552/1-984 TSEAPILTPP REPRILSEEE QEMFRDFDYI ADWC BACU009547/1-983 TSEAPILTPP REPRILSEEE QEMFRDFDYI ADWC ENSBTAP00000029201/1-981 TSEAPILTPP REPRILSEEE QEMFRDFDYI ADWC