KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:38:14 2014 Check: 00 .. Name: ENSP00000314649/1-548 Len: 548 Check: 5911 Weight: 1.00 Name: ENSBTAP00000029203/1-526 Len: 548 Check: 2785 Weight: 1.00 Name: bmy_10269T0/1-520 Len: 548 Check: 431 Weight: 1.00 Name: BACU017604/1-405 Len: 548 Check: 6837 Weight: 1.00 Name: ENSTTRP00000000262/1-524 Len: 548 Check: 3167 Weight: 1.00 // 1 50 ENSP00000314649/1-548 MATCIWLRSC GARRLGSTFP GCRLRPRAGG LVPASGPAPG PAQLRCYAGR ENSBTAP00000029203/1-526 MATCLRLRSC AAPHLRRAPP SRICRPRADC PV-------- -APIRGYARG bmy_10269T0/1-520 METCFRLRSC LALHLPRTPP SRVLRPRADY SV-------- -ARIRGYARG BACU017604/1-405 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000262/1-524 MATCFRLRSC LALHLPRTPP SRVLRLRAGY PV-------- -ARIRGYARG 51 100 ENSP00000314649/1-548 LAGLSAALLR TDSFVGGRWL PAAATFPVQD PASGAALGMV ADCGVREARA ENSBTAP00000029203/1-526 PAGLSSALLR TDGFVGGLWV SAAATFPVHD PASGAELGLV ADCGVPEARA bmy_10269T0/1-520 PAGLSSALLR TDGFVGGSWL SAAATFPVHD PASGAELGLV ADCGVPEARA BACU017604/1-405 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000262/1-524 PAGLSSALLR TDGFVGGSWL SAAATFPVHD PASGAELGLV ADCGVPEARA 101 150 ENSP00000314649/1-548 AVRAAYEAFC RWREVSAKER SSLLRKWYNL MIQNKDDLAR IITAESGKPL ENSBTAP00000029203/1-526 AVRAAYEAFC SWRGVSAKER SSLLRKWYDL MIQNKDDLAK IITAESGKPL bmy_10269T0/1-520 AVRAAYEAFC SWRGVSAKER SSLLRKWYDL MIQNKDDLAK IITAESGKPL BACU017604/1-405 ---------- ---------- ---------- MIQNKDDLAK IITAESGKPL ENSTTRP00000000262/1-524 AVRAAYEAFC SWRGVSAKER SSLLRKWYDL MIQNKDDLAK IITAESGKPL 151 200 ENSP00000314649/1-548 KEAHGEILYS AFFLEWFSEE ARRVYGDIIH TPAKDRRALV LKQPIGVAAV ENSBTAP00000029203/1-526 KEAQGEILYS ANFLEWFSEE ARRVYGDIIS TPAKERRALV LKQPVGVAAV bmy_10269T0/1-520 KEAQGEILYS ANFLEWFSEE ARRIYGDIIY TPAKEKRALV LKQPLGVATV BACU017604/1-405 KEAQGEILYS ANFLEWFSEE ARRVYGDIIY TPAKEKRGLV LKQPLGVAAV ENSTTRP00000000262/1-524 KEAQGEILYS ANFLEWFSEE ARRVYGDIIY TPAKEKRALV LKQPLGVAAV 201 250 ENSP00000314649/1-548 ITPWNFPSAM ITRKVGAALA AGCTVVVKPA EDTPFSALAL AEVNQGFLLD ENSBTAP00000029203/1-526 ITPWNFPSAM ITRKVGAALA AGCTVVVKPA EDTPFSALAL AE-------- bmy_10269T0/1-520 ITPWNFPSAM ITRKVGAALA AGCTVVVKPA EDTPFSALAL AE-------- BACU017604/1-405 ITPWNFPSAM ITRKVGAALA AGCTVVVKPA EDTPFSALAL AA-------- ENSTTRP00000000262/1-524 ITPWNFPSAM ITRKVGAALA S-CTVVVKPA EDTPFSALAL AA-------- 251 300 ENSP00000314649/1-548 LDPLLLASQA GIPSGVYNVI PCSRKNAKEV GEAICTDPLV SKISFTGSTT ENSBTAP00000029203/1-526 -----LANQA GIPPGVYNVI PCSQKKAKEV GEALCTDPLV SKISFTGSTA bmy_10269T0/1-520 -----LADQA GIPPGVYNVI PCSQKKVKEV GEALCTDPLV SKISFTGSTA BACU017604/1-405 -----LADQA GIPPGVYNVI PCSQKKAKEV GEALCTDPLV SKISFTGSTA ENSTTRP00000000262/1-524 -----LADQA GIPPGVYNVI PCSQKKAKEV GEALCTDPLV SKISFTGSTA 301 350 ENSP00000314649/1-548 TGKILLHHAA NSVKRVSMEL GGLAPFIVFD SANVDQAVAG AMASKFRNTG ENSBTAP00000029203/1-526 TGKVLLHHAA NSVKRVSMEL GGHAPFIVFD SANVDQAVAG AMASKFRNSG bmy_10269T0/1-520 TGKVLLHHAA NSVKRVSMEL GGHAPFIVFD SANVDQAVAG AMASKFRNSG BACU017604/1-405 TGKVLLHHAA NSVKRVSMEL GGHAPFIVFD SANVDQAVAG AMASKFRNSG ENSTTRP00000000262/1-524 TGKVLLHHAA NSVKRVSMEL GGHAPFIVFD SANVDQAVAG AMASKFRNSG 351 400 ENSP00000314649/1-548 QTCVCSNQFL VQRGIHDAFV KAFAEAMKKN LRVGNGFEEG TTQGPLINEK ENSBTAP00000029203/1-526 QTCVCSNRFL VQSGIHDSFV KKFAEAIKTN LHVGNGFDER TTQGPLINAK bmy_10269T0/1-520 QTCVCSNRFL VQRGIHDSFV KKFAEAIKTN LHVGNGFEEX TTQGPLINEK BACU017604/1-405 QTCVCSNRFL VQRGIHDSFV KKFAEAIKTN LHVGNGFEER TTQGPLINEK ENSTTRP00000000262/1-524 QTCVCSNRFL VQRGIHDSFV KKFAEAMKTN LHVGNGFEER TTQGPLINEK 401 450 ENSP00000314649/1-548 AVEKVEKQVN DAVSKGATVV TGGKRHQLGK NFFEPTLLCN VTQDMLCTHE ENSBTAP00000029203/1-526 AVEKVEKHVS DAISKGATVV TGGKRHHVGK NFFEPTLLSN VTRDMLCSQE bmy_10269T0/1-520 AVEKVEKHVS DAISKGATVV TGGKRHQVGK NFFEPTLLSN VTRDMLCSQE BACU017604/1-405 AVEKVEKHVS DAISKGATVV TGGKRHQVGK NFFEPTLLSN VTRDMLCSQE ENSTTRP00000000262/1-524 AVEKVEKHVS DAISKGATVV TGGKRHQVGK NFFEPTLLSN VTRDMLCSQE 451 500 ENSP00000314649/1-548 ETFGPLAPVI KFDTEEEAIA IANAADVGLA GYFYSQDPAQ IWRVAEQLEV ENSBTAP00000029203/1-526 ETFGPVAPVI KFNTEEEAVA IANAANVGLA GYFYSQDPAQ IWRVAERLEV bmy_10269T0/1-520 ETFGPVAPVI KFDTEEEAVA IANVANVGLA ------DPAQ IWRVAERLEV BACU017604/1-405 ETFGPVAPVI KFDTEEEAVA IANVADVGLA GYFYSQDPAQ IWRVAERLEV ENSTTRP00000000262/1-524 ETFGPVAPVI KFDTEEEAVA IANVADV-LA GYFYSQDPAQ IWRVAERLEV 501 550 ENSP00000314649/1-548 GMVGVNEGLI SSVECPFGGV KQSGLGREGS KYGIDEYLEL KYVCYGGL ENSBTAP00000029203/1-526 GMVGVNEGLI SSVECPFGGV KQSGLGREGS KYGIDEYLEL KYVCFGGL bmy_10269T0/1-520 GMVGINEGLI SSVECPFGGV KQSGLGREGS KYGIDEYLEL KYVCFGGL BACU017604/1-405 GMVGVNEGLI SSVECPFGGV KQSGLGREGS KYGIDEYLEL KYVCFGGL ENSTTRP00000000262/1-524 GMVGVNEGLI SSVECPFGGV KQSGLGREGS KYGIDEYLEL KYVCFGGL