KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:38:15 2014 Check: 00 .. Name: ENSTTRP00000015519/1-1011 Len: 1122 Check: 1702 Weight: 1.00 Name: ENSP00000367459/1-1072 Len: 1122 Check: 5819 Weight: 1.00 Name: ENSBTAP00000029204/1-1066 Len: 1122 Check: 3891 Weight: 1.00 Name: bmy_10267T0/1-1099 Len: 1122 Check: 9224 Weight: 1.00 Name: BACU017603/1-1073 Len: 1122 Check: 6815 Weight: 1.00 // 1 50 ENSTTRP00000015519/1-1011 ---------- ---------- ---------- ---------M APPTGALSSL ENSP00000367459/1-1072 ---------- ---------- ---------- ---------M APPTGVLSSL ENSBTAP00000029204/1-1066 ---------- ---------- ---------- ---------M APPTGELASL bmy_10267T0/1-1099 FPLKFLRLNL APKKHQRKPA PKTSQGHLRS QLPPTVWGKM APPTGALSSL BACU017603/1-1073 ---------- ---------- ---------- ---------M APPTGALSSL 51 100 ENSTTRP00000015519/1-1011 LLLVTLTXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000367459/1-1072 LLLVTIAGCA RKQCSEGRTY SNAVISPNLE TTRIMRVSHT FPVVDCTAAC ENSBTAP00000029204/1-1066 LLLVTFTGCA WTQCSEGRTY SNAIISPNLE TSKIMPVPQT TPLGDCTSAC bmy_10267T0/1-1099 LLLVTLTGCA CTQCSEGRTY SNAIISPNLE TSKIMPVPQT TPVVDCTSAC BACU017603/1-1073 LLLVTLTGCA CTQCSEGRTY SNAIISPNLE TSKIMPVPQT TPVVDCTSAC 101 150 ENSTTRP00000015519/1-1011 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000367459/1-1072 CDLSSCDLAW WFEGRCYLVS CPHKENCEPK KMGPIRSYLT FVLRPVQRPA ENSBTAP00000029204/1-1066 CDLSSCDLAW WFEGRCYLVS CPHKESCEPK KMGSIRSYLT FVLRPAQRPA bmy_10267T0/1-1099 CDLYSCDLAW WFEGRCYLVS CPHKENCEPK KMGSIRSYLT FVLRPAQRPA BACU017603/1-1073 CDLYSCDLAW WFEGRCYLVS CPHKENCEPK KMGSIRSYLT FVLRPAQRPA 151 200 ENSTTRP00000015519/1-1011 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000367459/1-1072 QLLDYGDMML NRGSPSGIWG DSPEDIRKDL TFLGKDWGLE EMSEYSDDYR ENSBTAP00000029204/1-1066 PLLDYGEVML NRDAPSGIWG DSLEDIRKDL PFLGKDQGL- DMSEYSDDYR bmy_10267T0/1-1099 QLLDYGEVML NRGAPSGIWG DSPEDIRKDL AFLGKDRGLE ETSEYSDDYR BACU017603/1-1073 QLLDYGEVML NRGAPSGIWG DSPEDIRKDL AFLGKDRGLE ETSEYSDDYR 201 250 ENSTTRP00000015519/1-1011 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000367459/1-1072 ELEKDLLQPS GKQEPRGSAE YTDWGLLPGS EGAFNSSVGD SPAVPAETQQ ENSBTAP00000029204/1-1066 ELEQNLFQPI SKQEPRGSAE YTDWGLLPGS EGGFNSSAGD SPAAPAEKQL bmy_10267T0/1-1099 ELEQSLFQPI SKQEPRGSAE YTDWGLPAGG KGGFNSSAAD SPATPAEKQQ BACU017603/1-1073 ELEQSLLQPI SKQEPRGSAE YTDWGLPAGG KGGFNSSAGD SPATPAEKQQ 251 300 ENSTTRP00000015519/1-1011 X-XXXXXXXX XAWTPAPKPS PGGRFLLPWT T--PSGKELE KE-TFQLQEQ ENSP00000367459/1-1072 D-PELHYLNE SASTPAPKL- PERSVLLPLP TTPSSGEVLE KEKASQLQEQ ENSBTAP00000029204/1-1066 EDPELHKPNE SAWTPAPKPS PE-MLLLPLV TAPPPGEELE RE-TSQLHGQ bmy_10267T0/1-1099 EGPELHKLNE SAWTPAPKPS PGGRILLPLV TTPPSGKELE KE-TFQLQEQ BACU017603/1-1073 EGPELHKLNE SAWTPGPKPS PGGRFLLPLV TTPPSGKELE EE-TFQLQEQ 301 350 ENSTTRP00000015519/1-1011 SSNSSGKEVL MPSHNPSPTS LEFSPATMEK SPALTVTPRS TEHSISTLPA ENSP00000367459/1-1072 SSNSSGKEVL MPSHSLPPAS LELSSVTVEK SPVLTVTPGS TEHSIPTPPT ENSBTAP00000029204/1-1066 AGNSSGKEVL MPSHDPPPAS LEVSPATVEK SPVLAVTPWS TEHSIPTLPT bmy_10267T0/1-1099 SSNSSGKEVL MPSHNPSPTS LEFSPATVEK SPALTVTPWS TEHSISTLPT BACU017603/1-1073 SSNSSGKEVL MPSHNPSATS LEFSPATVEK SPALTVTPWS TEHSISTLPT 351 400 ENSTTRP00000015519/1-1011 STLPTESAPS QQPVSAPTAP RTVKELTVSA GDNLIITLPE NEVELKASVV ENSP00000367459/1-1072 SAAPSESTPS ELPISPTTAP RTVKELTVSA GDNLIITLPD NEVELKAFVA ENSBTAP00000029204/1-1066 STIPSE---- -QPRSAPTAP RTVKQLMVSA GENIVITSPA DEVELKASVV bmy_10267T0/1-1099 STLPTESTPS QQPVSAPTPP RTVKELMVSA GDNLIITLPE NEVELKASVV BACU017603/1-1073 STLPTESIPS QQPVSAPTPP RTVKELMVSA GDNLIITLPE NEVELKASVV 401 450 ENSTTRP00000015519/1-1011 PAPPAETTYN YXXXXXXXXX XXXXXXXXXX XXXXXXXQLS VGIYSFKVAV ENSP00000367459/1-1072 PAPPVETTYN YEWNLISHPT DYQGEIKQGH KQTLNLSQLS VGLYVFKVTV ENSBTAP00000029204/1-1066 PAPPAETTYS YEWSLISHPE DYQGEIKQRH TQALNVSQLS IGRYAFKVAV bmy_10267T0/1-1099 PAPPAETTYN YEWSLISHPE DYQGEIKQRH TQTLNVSQLS VGLYAFKVAV BACU017603/1-1073 PAPPAETTYN YEWSLISHPE DYQGEIKQRH TQTLNVSQLS VGLYAFKVAV 451 500 ENSTTRP00000015519/1-1011 SSENAFGEGF VNVTVKPXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXS ENSP00000367459/1-1072 SSENAFGEGF VNVTVKPARR VNLPPVAVVS PQLQELTLPL TSALIDGSQS ENSBTAP00000029204/1-1066 SGENAFGEGF VNVTVKPAGR VNLPPTAIAS PERQELSLPL VSALIDGSQS bmy_10267T0/1-1099 SSENAFGEGF VNVTVKPAGR VNLPPVAVVS PERQELTLPL TSALIDGSHS BACU017603/1-1073 SSENAFGEGF VNVTVKPAGR VNLPPVAVVS PERQELTLPL TSALIDGSHS 501 550 ENSTTRP00000015519/1-1011 TDDTKIVSYH WEEVNGPFQE EKTSADTPVL HLSNLIPGNY TF-------- ENSP00000367459/1-1072 TDDTEIVSYH WEEINGPFIE EKTSVDSPVL RLSNLDPGNY SF-------- ENSBTAP00000029204/1-1066 TDDTKIVSYH WEEVNGPFRE EKTSADSAVL HLSNLVPGNY TF-------- bmy_10267T0/1-1099 TDDTKIVSYH WEEVNGPFQE EKTSADTPIL XLSNLVPGNY TFRQVASSPF BACU017603/1-1073 TDDTKIVSYH WEEVNGPFQE EKTSADTPIL HLSNLVPGNY TF-------- 551 600 ENSTTRP00000015519/1-1011 -RLTVTDSDG AISSTTAALI VNSAVDHPPV ASAGPNQTIT LPQNSITLNG ENSP00000367459/1-1072 -RLTVTDSDG ATNSTTAALI VNNAVDYPPV ANAGPNHTIT LPQNSITLNG ENSBTAP00000029204/1-1066 -RLTVTDSDG ATNSTTAALI VNSAVDYPPV ANAGPNQTIT LPQNSITLNG bmy_10267T0/1-1099 RRLTVTDSDG AISSTTAALI VNSAVDHPPV ANAGPNQTIT LPQNSITLNG BACU017603/1-1073 -RLTVTDSDG AISSTTAALI VNSAVDHPPV ANAGPNQTIT LPQNSITLNG 601 650 ENSTTRP00000015519/1-1011 NQSSDDHQIV LYEWSLGPGS ESKEVAMQGV ETPYLHLSAM KEGNYTFQLM ENSP00000367459/1-1072 NQSSDDHQIV LYEWSLGPGS EGKHVVMQGV QTPYLHLSAM QEGDYTFQLK ENSBTAP00000029204/1-1066 NQSSDDHQIV LYEWSLVPGS ENQEVAMQGV KTPYLHLSAM KEGDYTFQLM bmy_10267T0/1-1099 NQSSDDHQIV LYEWSLGPES ENKEVAMQGV ETPYLHLSAM KEGDYTFQLM BACU017603/1-1073 NQSSDDHQIV LYEWSLGPGS ESKELAMQGV ETPYLHLSAM KEGDYTFQLM 651 700 ENSTTRP00000015519/1-1011 VTDSSRQQST AVVTVIVQPX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000367459/1-1072 VTDSSRQQST AVVTVIVQPE NNRPPVAVAG PDKELIFPVE SATLDGSSSS ENSBTAP00000029204/1-1066 VTDSSKQQSM AVVTVTVQPE NNRPPVAVAG PDKELILPVE STTLDGSRSS bmy_10267T0/1-1099 VTDSSRQQST AVVTVIVQPE NNRPPMAVAG PDQELVFPVE STTLDGSRSS BACU017603/1-1073 VTDSSRQQST AVVTVIVQPE NNRPPMAVAG PDQELVFPVE STTLDGSRSS 701 750 ENSTTRP00000015519/1-1011 XXXXXXXXXX XXXXGPSAVE MENIDKAIAT VSGLQVGTYH FRLAVKDQQG ENSP00000367459/1-1072 DDHGIVFYHW EHVRGPSAVE MENIDKAIAT VTGLQVGTYH FRLTVKDQQG ENSBTAP00000029204/1-1066 DDHGIVFYRW ERVRGPSAVE MENFDKAIAT VSGLQVGTYH FRLTVKDQQG bmy_10267T0/1-1099 DDHGIVFYHW EHVRGPSAVE MENIDKAIAT VSGLQVGTYH FRLAVKDQQG BACU017603/1-1073 DDHGIVFYHW EHVRGPSAVE MENIDKAIAK VSGLQVGTYH FRLAVKDQQG 751 800 ENSTTRP00000015519/1-1011 LSSTTTLSVT VRKENNSPPR AQAGGRHVLV LPNNSITLDG SRSTDDQGIV ENSP00000367459/1-1072 LSSTSTLTVA VKKENNSPPR ARAGGRHVLV LPNNSITLDG SRSTDDQRIV ENSBTAP00000029204/1-1066 LSSTTTLTVA VKKENNSPPR AQAGGRHVLV LPNNSITLDG SRSTDDQGIV bmy_10267T0/1-1099 LSSTTTLSVT VRKASSE--- -RGSGRFF-- --SNSL---- SRDVATQALG BACU017603/1-1073 LSSTTTLSVT VRKENNSPPR AQAGGRHVLV LPNNSITLDG SRSTDDQGIV 801 850 ENSTTRP00000015519/1-1011 SYLWIRDGQS PAAGDVMDGS DHSTALQLTN LVEGVYTFHL RVTDSQGSSD ENSP00000367459/1-1072 SYLWIRDGQS PAAGDVIDGS DHSVALQLTN LVEGVYTFHL RVTDSQGASD ENSBTAP00000029204/1-1066 SYLWIRDGQS PAAGDVIDGS DHSSALQLTN LVEGIYTFRL RVADGQGASD bmy_10267T0/1-1099 SF-------- --EKDVMDGS DHSTALQLTN LVEGVYTFHL RVADSQGASD BACU017603/1-1073 SYLWIRDGQS PAAGDVMDGS DHSTALQLTN LVEGVYTFHL RVADGQGASD 851 900 ENSTTRP00000015519/1-1011 MDTATVEVRP DPKKSGLVEL ILQVGVGQLT EQQKDTLVRQ LAVLLNVLDS ENSP00000367459/1-1072 TDTATVEVQP DPRKSGLVEL TLQVGVGQLT EQRKDTLVRQ LAVLLNVLDS ENSBTAP00000029204/1-1066 TDTATVEVRP DPKKGGLVEL ILQVGVGQLT EQHKDTLVRQ LAALLNVLDS bmy_10267T0/1-1099 MDTATVEVRP DPKKSGLVEL ILQVGAGQLA EQQKDTLVGQ LAVLLNVLDS BACU017603/1-1073 MDTATVEVRP DPKKSGLVEL ILQVGVGQLT EQQKETLVRQ LAVLLNVLDS 901 950 ENSTTRP00000015519/1-1011 DIKVQKIQAL SDLSTVIVFY VQTGPPFKVL KAAEVARNLH RRLSKEKADF ENSP00000367459/1-1072 DIKVQKIRAH SDLSTVIVFY VQSRPPFKVL KAAEVARNLH MRLSKEKADF ENSBTAP00000029204/1-1066 DIRVQKIQAH SDLSTVIVFY VQTGPPFKVL KAAEVARNLH RRLSKEKADF bmy_10267T0/1-1099 DIKVQKIQAH SDLSTVIVFY VQTGPPFKVL KAAEVARNLH RRLSKEKADF BACU017603/1-1073 DIKVQKIQAH SDLSTVIVFY VQTGPPFKVL KAAEVARNLH RRLSKEKADF 951 1000 ENSTTRP00000015519/1-1011 LLFKVLRIDT AGCLLXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000367459/1-1072 LLFKVLRVDT AGCLLKCSGH GHCDPLTKRC ICSHLWMENL IQRYIWDGES ENSBTAP00000029204/1-1066 LLFKVLRIDT AGCLLKCSGH GHCDPITKRC ICSQLWMENL IQRYIRDGES bmy_10267T0/1-1099 LLFKVLRIDT AGCLLKCSGH GHCDPITKRC ICSQLWMENL IQRYIQDGES BACU017603/1-1073 LLFKVLRIDT AGCLLKCSGH GHCDPITKRC ICSQLWMENL IQRYIQDGES 1001 1050 ENSTTRP00000015519/1-1011 XXXWSVFYVT TLALTLVVLT GGLTWLCICC CKRRKRTKIR KKTKYTILDN ENSP00000367459/1-1072 NCEWSIFYVT VLAFTLIVLT GGFTWLCICC CKRQKRTKIR KKTKYTILDN ENSBTAP00000029204/1-1066 NCEWSVFYVT ILALALIVLT GGLTWLCICC CKRRKRTKIR KKTKYTILDN bmy_10267T0/1-1099 NCEWSVFYVT TLALTLVVLT GGLTWLCICC CKRRKRTKIR KKTKYTILDN BACU017603/1-1073 NCEWNVFYVT TLALTLVVLT GGLTWLCICC CKRRKRTKIR KKTKYTILDN 1051 1100 ENSTTRP00000015519/1-1011 MDDQERMELR PKY------- ---------- ---------- ---------- ENSP00000367459/1-1072 MDEQERMELR PKYGIKHRST EHNSSLMVSE SEFDSDQDTI FSREKMERGN ENSBTAP00000029204/1-1066 MDDQERMELR PKYGIKHRST EHNSSLMVSE SEFDSDQDTI FSRERMERGN bmy_10267T0/1-1099 MDDQERMELR PKYGIKHRST EHNSSLMVSE SEFDSDQDTI FSRERMERGN BACU017603/1-1073 MDDQERMELR PKYGIKHRST EHNSSLMVSE SEFDSDQDTI FSRERMERGN 1101 1150 ENSTTRP00000015519/1-1011 ---------- ---------- -- ENSP00000367459/1-1072 PKVSMNGSIR NGASFSYCSK DR ENSBTAP00000029204/1-1066 PKVSMNGSIR NGVSFSYCSK DR bmy_10267T0/1-1099 PKVSMNGSIR NGACFSYCSK DR BACU017603/1-1073 PKVCMNGSIR NGACFSYCSK DR