KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:38:16 2014 Check: 00 .. Name: ENSTTRP00000008822/1-509 Len: 556 Check: 5750 Weight: 1.00 Name: bmy_15460T0/1-431 Len: 556 Check: 9375 Weight: 1.00 Name: BACU004907/1-530 Len: 556 Check: 5199 Weight: 1.00 Name: ENSP00000405574/1-514 Len: 556 Check: 7418 Weight: 1.00 Name: ENSBTAP00000029211/1-514 Len: 556 Check: 7419 Weight: 1.00 // 1 50 ENSTTRP00000008822/1-509 MSISSDEVNF LVYRYLQESG FSHSAFTFGI ESHISQSNIN GALVPPAALI bmy_15460T0/1-431 ---------- ---------- ---------- ---------- ---------- BACU004907/1-530 ---------- IVIPFLLLSG FSHSAFTFGI ESHISQSNIN GALVPPAALI ENSP00000405574/1-514 MSISSDEVNF LVYRYLQESG FSHSAFTFGI ESHISQSNIN GALVPPAALI ENSBTAP00000029211/1-514 MSISSDEVNF LVYRYLQESG FSHSAFTFGI ESHISQSNIN GALVPPAALI 51 100 ENSTTRP00000008822/1-509 SIIQKGLQYV EAEVSINDXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15460T0/1-431 ---------- ---------- ---------- -------MPD VVQTRQQAYR BACU004907/1-530 SIIQKGLQYV EAEVSINEDG TLFDGRPIES LSLIDAVMPD VVQTRQQAYR ENSP00000405574/1-514 SIIQKGLQYV EAEVSINEDG TLFDGRPIES LSLIDAVMPD VVQTRQQAYR ENSBTAP00000029211/1-514 SIIQKGLQYV EAEVSINEDG TLFDGRPIES LSLIDAVMPD VVQTRQQAYR 101 150 ENSTTRP00000008822/1-509 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXNHTDMME bmy_15460T0/1-431 DKLAQQQAAA AAAAAAATNQ QGSAKNGENT ANGEENGAHT IANNHTDMME BACU004907/1-530 DKLAQQQAAA AAAAAAATNQ QGSAKNGENT ANGEENGAHT IANNHTDMME ENSP00000405574/1-514 DKLAQQQAAA AAAAAAAASQ QGSAKNGENT ANGEENGAHT IANNHTDMME ENSBTAP00000029211/1-514 DKLAQQQAAA AAAAAAATNQ QGSAKNGENT ANGEENGAHT IANNHTDMME 151 200 ENSTTRP00000008822/1-509 VDGDVEIPPN KAVVLRGHES EVFICAWNPV SDLLASGSGD STARIWNLSE bmy_15460T0/1-431 VDGDVEIPPN KAVVLRGHES EVFICAWNPV SDLLASGAVP AILEIW---- BACU004907/1-530 VDGDVEIPPN KAVVLRGHES EVFICAWNPV SDLLASGSGD STARIWNLSE ENSP00000405574/1-514 VDGDVEIPPN KAVVLRGHES EVFICAWNPV SDLLASGSGD STARIWNLSE ENSBTAP00000029211/1-514 VDGDVEIPPN KAVVLRGHES EVFICAWNPV SDLLASGSGD STARIWNLSE 201 250 ENSTTRP00000008822/1-509 NSTSGSTQLV LRHCIREGGQ DVPSNKDVTS LDWNSEGTLL ATGSYDGFAR bmy_15460T0/1-431 ---------- ---------- ---------- ----SEGTLL ATGSYDGFAR BACU004907/1-530 NSTSGSTQLV LRHCIREGGQ DVPSNKDVTS LDWNSEGTLL ATGSYDGFAR ENSP00000405574/1-514 NSTSGSTQLV LRHCIREGGQ DVPSNKDVTS LDWNSEGTLL ATGSYDGFAR ENSBTAP00000029211/1-514 NSTSGSTQLV LRHCIREGGQ DVPSNKDVTS LDWNSEGTLL ATGSYDGFAR 251 300 ENSTTRP00000008822/1-509 IWTKDGNLAS TLGQHKGPIF ALKWNKKGNF ILSAGVDKTT IIWDAHTGEA bmy_15460T0/1-431 IWTKDGNLAS TLGQHKGPIF ALKWNKKGNF ILSAGVDKTT IIWDAHTGEA BACU004907/1-530 IWTKDGNLAS TLGQHKGPIF ALKWNKKGNF ILSAGVDKTT IIWDAHTGEA ENSP00000405574/1-514 IWTKDGNLAS TLGQHKGPIF ALKWNKKGNF ILSAGVDKTT IIWDAHTGEA ENSBTAP00000029211/1-514 IWTKDGNLAS TLGQHKGPIF ALKWNKKGNF ILSAGVDKTT IIWDAHTGEA 301 350 ENSTTRP00000008822/1-509 KQQFPFHSAP ALDVDWQSNN TFASCSTDMC IHVCKLGQDR PIKTFQGHTN bmy_15460T0/1-431 KQQFPFHSAP ALDVDWQSNN TFASCSTDMC IHVCKLGQDR PIKTFQGHTN BACU004907/1-530 KQQFPFHSAP ALDVDWQSNN TFASCSTDMC IHVCKLGQDR PIKTFQGHTN ENSP00000405574/1-514 KQQFPFHSAP ALDVDWQSNN TFASCSTDMC IHVCKLGQDR PIKTFQGHTN ENSBTAP00000029211/1-514 KQLFPFHSAP ALDVDWQSNN TFASCSTDMC IHVCKLGQDR PIKTFQGHTN 351 400 ENSTTRP00000008822/1-509 EVNAIKWDPT GNLLASCSDD MTLKIWSMKQ DNCVHDLQAH NKEIYTIKWS bmy_15460T0/1-431 EVNAIKWDPT GNLLASCSDD MTLKIWSMKQ DNCVHDLQAH NKEIYTIKWS BACU004907/1-530 EVNAIKWDPT GNLLASCSDD MTLKIWSMKQ DNCVHDLQAH NKEIYTIKWS ENSP00000405574/1-514 EVNAIKWDPT GNLLASCSDD MTLKIWSMKQ DNCVHDLQAH NKEIYTIKWS ENSBTAP00000029211/1-514 EVNAIKWDPT GNLLASCSDD MTLKIWSMKQ DNCVHDLQAH NKEIYTIKWS 401 450 ENSTTRP00000008822/1-509 PTGPGTNNPN ANLMLAXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15460T0/1-431 PTGPGTNNPN ANLMLASASF DSTVRLWDVD RGICIHTLTK HQEPVYSVAF BACU004907/1-530 PTGPGTNNPN ANLMLASASF DSTVRLWDVD RGICIHTLTK HQEPVYSVAF ENSP00000405574/1-514 PTGPGTNNPN ANLMLASASF DSTVRLWDVD RGICIHTLTK HQEPVYSVAF ENSBTAP00000029211/1-514 PTGPGTSNPN ANLMLASASF DSTVRLWDVD RGICIHTLTK HQEPVYSVAF 451 500 ENSTTRP00000008822/1-509 XXXXXXXXXX XXXXXXXXXX XXTGALVHSY RGTGGIFEVC WNAAGDKVGA bmy_15460T0/1-431 SPDGRYLASG SFDKCVHIWN TQTGALVHSY RGTGGIFEVC WNAAGDKVGA BACU004907/1-530 SPDGRYLASG SFDKCVHIWN TQTGALVHSY RGTGGIFEVC WNAAGDKVGA ENSP00000405574/1-514 SPDGRYLASG SFDKCVHIWN TQTGALVHSY RGTGGIFEVC WNAAGDKVGA ENSBTAP00000029211/1-514 SPDGRYLASG SFDKCVHIWN TQTGALVHSY RGTGGIFEVC WNAAGDKVGA 501 550 ENSTTRP00000008822/1-509 SASDGSVSI- ---------- ---------- ---------- ---------- bmy_15460T0/1-431 SASDGSVSLC IRPSEIALLV GSHGPTMNVY IAKMTVPDPS TAIVPLEPWP BACU004907/1-530 SASDGST--- ---------F GNSATSWKPW TDYECVYSQN DCPRPKYCYS ENSP00000405574/1-514 SASDGSV--- ---------- ---------- ----CVLDLR K--------- ENSBTAP00000029211/1-514 SASDGSV--- ---------- ---------- ----CVLDLR K--------- 551 600 ENSTTRP00000008822/1-509 ------ bmy_15460T0/1-431 VHYSQI BACU004907/1-530 PT---- ENSP00000405574/1-514 ------ ENSBTAP00000029211/1-514 ------