KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:38:17 2014 Check: 00 .. Name: ENSTTRP00000011086/1-745 Len: 819 Check: 380 Weight: 1.00 Name: ENSBTAP00000029222/1-707 Len: 819 Check: 7070 Weight: 1.00 Name: bmy_15650T0/1-767 Len: 819 Check: 8991 Weight: 1.00 Name: BACU007135/1-754 Len: 819 Check: 97 Weight: 1.00 Name: ENSP00000404658/1-747 Len: 819 Check: 367 Weight: 1.00 // 1 50 ENSTTRP00000011086/1-745 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029222/1-707 ---------- ---------- ---------- ---------- ---------- bmy_15650T0/1-767 MAVILSDSRK QIITRTGISK GVERVEVLDS GRTIRFLFLG GNGLRLRKTE BACU007135/1-754 MAVILSDSRK QIITRTGISK GIERVEVLDS GHTIRFLFLG GNGLRLRKTE ENSP00000404658/1-747 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000011086/1-745 ---------- ---------- MDIPNPPTSK CITYWKRKVK SEYMRLRQLK ENSBTAP00000029222/1-707 ---------- ---------- MDIPNPPTSK CITYWKRKVK SEYMRLRQLK bmy_15650T0/1-767 DSGTEDTCKT IPFALHSTSK MDIPNPPTSK CITYWKRKVK SEYMRLRQLK BACU007135/1-754 DGG------- ---------K MDIPNPPTSK CITYWKRKVK SEYMRLRQLK ENSP00000404658/1-747 ---------- ---------- MEIPNPPTSK CITYWKRKVK SEYMRLRQLK 101 150 ENSTTRP00000011086/1-745 RLQANMGAKA LYVANFAKVQ EKTQILNEEW KKLRVQPVQL MKPVSGHPFL ENSBTAP00000029222/1-707 RLQANMGAKA LYVANFAKVQ EKTQILNEEW KKLRVQPVQL MKPVSGHPFL bmy_15650T0/1-767 RLQANMGAKA LYVANFAKVQ EKTQILNEEW KKLRVQPVQL MKPVSGHPFL BACU007135/1-754 RLQANMGAKA LYVANFAKVQ EKTQILNEEW KKLRVQPVQL MKPV------ ENSP00000404658/1-747 RLQANMGAKA LYVANFAKVQ EKTQILNEEW KKLRVQPVQS MKPVSGHPFL 151 200 ENSTTRP00000011086/1-745 KKCTIESIFP GFASQHMLMR SLNTVALVPI MYSWSPLQQN FMVEDETVLC ENSBTAP00000029222/1-707 KKCTIESIFP GFASQHMLMR SLNTVALVPI MYSWSPLQQN FMVEDETVLC bmy_15650T0/1-767 KKCTIESIFP GFASQHMLMR SLNTVALVPI MYSWSPLQQN FMVEDETVLC BACU007135/1-754 ---------- ---------- ---------- ---------- ---EDETVLC ENSP00000404658/1-747 KKCTIESIFP GFASQHMLMR SLNTVALVPI MYSWSPLQQN FMVEDETVLC 201 250 ENSTTRP00000011086/1-745 NIPYMGDEV- EEDETFIEEL INNYDGKVHG EEEMIPGSVL ISDAVFLELV ENSBTAP00000029222/1-707 NIPYMGDEVK EEDETFIEEL INNYDGKVHG EEEMIPGSVL ISDAVFLELV bmy_15650T0/1-767 NIPYMGDEVK EEDETFIEEL INNYDGKVHG EEEMIPGSVL ISDAVFLELV BACU007135/1-754 NIPYMGDEVK EEDETFIEEL INNYDGKVHG EEEMIPGSVL ISDAVFLELV ENSP00000404658/1-747 NIPYMGDEVK EEDETFIEEL INNYDGKVHG EEEMIPGSVL ISDAVFLELV 251 300 ENSTTRP00000011086/1-745 DALNQYSDEE EEGHNDTSDG KQDDSKEDLP VTRKRKRHAI EGNKKSSKKQ ENSBTAP00000029222/1-707 DALNQYSDED EEGHNDTSDG KQDDSKEDLP VTRKRKRHAI EGSKKSSKKQ bmy_15650T0/1-767 DALNQYSDEE EEGHNDTSDG KQDDSKEDLP VTRKRKRHAI EGNKKSSKKQ BACU007135/1-754 DALNQYSDEE EEGHNDTSDG KQDDSKEDLP VTRKRKRHAI EGNKKSSKKQ ENSP00000404658/1-747 DALNQYSDEE EEGHNDTSDG KQDDSKEDLP VTRKRKRHAI EGNKKSSKKQ 301 350 ENSTTRP00000011086/1-745 FPNDMIFSAI ASMFPENGVP DDMKERYREL TEMSDPNALP PQCTPNIDGP ENSBTAP00000029222/1-707 FPNDMIFSAI ASMFPENGVP DDMKERYREL TEMSDPNALP PQCTPNIDGP bmy_15650T0/1-767 FPNDMIFSAI ASMFPENGVP DDMKERYREL TEMSDPNALP PQCTPNIDGP BACU007135/1-754 FPNDMIFSAI ASMFPENGVP DDMKERYREL TEMSDPNALP PQCTPNIDGP ENSP00000404658/1-747 FPNDMIFSAI ASMFPENGVP DDMKERYREL TEMSDPNALP PQCTPNIDGP 351 400 ENSTTRP00000011086/1-745 NAKSVQREQS LHSFHTLFCR RCFKYDCFLH PFHATPNVYK RKNKEIKIEP ENSBTAP00000029222/1-707 NAKSVQREQS LHSFHTLFCR RCFKYDCFLH PFHATPNVYK RKNKEIKIEP bmy_15650T0/1-767 NAKSVQREQS LHSFHTLFCR RCFKYDCFLH PFHATPNVYK RKNKEIKIEP BACU007135/1-754 NAKSVQREQS LHSFHTLFCR RCFKYDCFLH PFHATPNVYK RKNKEIKIEP ENSP00000404658/1-747 NAKSVQREQS LHSFHTLFCR RCFKYDCFLH PFHATPNVYK RKNKEIKIEP 401 450 ENSTTRP00000011086/1-745 EPCGTDCFLL LEGAKEYAML HNPRSKCSGR RRRRHHVVSA SCSNTSASAV ENSBTAP00000029222/1-707 EPCGTDCFLL LEGAKEYAML HNPRSKCSGR RRRRHHVVNA SCSNTSASAV bmy_15650T0/1-767 EPCGTDCFLL LEGAKEYAML HNPRSKCSGR RRRRHHVVSA SCSNTSASAV BACU007135/1-754 EPCGTDCFLL LEGAKEYAML HNPRSKCSGR RRRRHHVVSA SCSNTSASAV ENSP00000404658/1-747 EPCGTDCFLL LEGAKEYAML HNPRSKCSGR RRRRHHIVSA SCSNASASAV 451 500 ENSTTRP00000011086/1-745 AETKEGDSDR DTGNDWASSS SEANSRCQTP TKQKASPAPP QLCVVEAPSE ENSBTAP00000029222/1-707 AETKEGDSDR DTGNDWASSS SEANSRCQTP TKQKASPAPP QLCVVEAPSE bmy_15650T0/1-767 AETKEGDSDR DTGNDWASSS SGQG------ ---------- ---------- BACU007135/1-754 AETKEGDSDR DTGNDWASSS SEANSRCQTP TKQKASPAPP QLCVVEAPSE ENSP00000404658/1-747 AETKEGDSDR DTGNDWASSS SEANSRCQTP TKQKASPAPP QLCVVEAPSE 501 550 ENSTTRP00000011086/1-745 PVEWTGAEES LFRVFHGTYF NNFCSIARLL GTKTCKQVFQ FAVKESLILK ENSBTAP00000029222/1-707 PVEWTGAEES LFRVFHGTYF NNFCSIARLL GTKTCKQVFQ FAVKESLILK bmy_15650T0/1-767 --EVTGPVGF LF-------- ---------- ------QVFQ FAVKESLILK BACU007135/1-754 PVEWTGAEES LFRVFHGTYF NNFCSIARLL GTKTCKQVFQ FAVKESLILK ENSP00000404658/1-747 PVEWTGAEES LFRVFHGTYF NNFCSIARLL GTKTCKQVFQ FAVKESLILK 551 600 ENSTTRP00000011086/1-745 LPTDELMNPS QKKKRKHR-- LWA-HCRKIQ LKKDNSSTQV YNYQPCDHPD ENSBTAP00000029222/1-707 LPTDELMNPS QKKKRKHR-- LWAAHCRKIQ LKKDNSSTQV YNYQPCDHPD bmy_15650T0/1-767 LPTDELMNPS QKKKRKHRQG LWAAHCRKIQ LKKDNSSTQV YNYQPCDHPD BACU007135/1-754 LPTDELMNPS QKKKRKHRQG LWAAHCRKIQ LKKDNSSTQV YNYQPCDHPD ENSP00000404658/1-747 LPTDELMNPS QKKKRKHR-- LWAAHCRKIQ LKKDNSSTQV YNYQPCDHPD 601 650 ENSTTRP00000011086/1-745 RPCDSTCPCI MTQNFCEKFC QCNPDCQNRF PGCRCKTQCN TKQCPCYLAV ENSBTAP00000029222/1-707 RPCDSTCPCI MTQNFCEKFC QCNPDCQNRF PGCRCKTQCN TKQCPCYLAV bmy_15650T0/1-767 RPCDSTCPCI MTQNFCEKFC QCNPDCQNRF PGCRCKTQCN TKQCPCYLAV BACU007135/1-754 RPCDSTCPCI MTQNFCEKFC QCNPDCQNRF PGCRCKTQCN TKQCPCYLAV ENSP00000404658/1-747 RPCDSTCPCI MTQNFCEKFC QCNPDCQNRF PGCRCKTQCN TKQCPCYLAV 651 700 ENSTTRP00000011086/1-745 RECDPDLCLT CGASEHWDCK VVSCKNCSIQ RGLKKHLLLA PSDVAGWGTF ENSBTAP00000029222/1-707 RECDPDLCLT CGASEHWDCK VVSCKNCSIQ RGLKKHLLLA PSDVAGWGTF bmy_15650T0/1-767 RECDPDLCLT CGASEHWDCK VVSCKNCSIQ RGLKKHLLLA PSDVAGWGTF BACU007135/1-754 RECDPDLCLT CGASEHWDCK VVSCKNCSIQ RGLKKHLLLA PSDVAGWGTF ENSP00000404658/1-747 RECDPDLCLT CGASEHWDCK VVSCKNCSIQ RGLKKHLLLA PSDVAGWGTF 701 750 ENSTTRP00000011086/1-745 IKESVQKNEF ISEYCGELIS QDEADRRGKV YDKYMSSFLF NLNNXXXXXX ENSBTAP00000029222/1-707 IKESVQKNEF ISEYCGELIS QDEADRRGKV YDKYMSSFLF NLNNDFVVDA bmy_15650T0/1-767 IKESVQKNEF ISEYCGELIS QDEADRRGKV YDKYMSSFLF NLNNDFVVDA BACU007135/1-754 IKESVQKNEF ISEYCGELIS QDEADRRGKV YDKYMSSFLF NLNNDFVVDA ENSP00000404658/1-747 IKESVQKNEF ISEYCGELIS QDEADRRGKV YDKYMSSFLF NLNNDFVVDA 751 800 ENSTTRP00000011086/1-745 XXXXXXXXXX XXXXNPNCYA KVVMVNGDHR IGIFAKRAIQ AGEELFFDYR ENSBTAP00000029222/1-707 TRKGNKIRFA NHSVNPNCYA KAKITD---- --------LK A--------- bmy_15650T0/1-767 TRKGNKIRFA NHSVNPNCYA KVVMVNGDHR IGIFAKRAIQ AGEELFFDYR BACU007135/1-754 TRKGNKIRFA NHSVNPNCYA KVVMVNGDHR IGIFAKRAIQ AGEELFFDYR ENSP00000404658/1-747 TRKGNKIRFA NHSVNPNCYA KVVMVNGDHR IGIFAKRAIQ AGEELFFDYR 801 850 ENSTTRP00000011086/1-745 YSQADALKYV GIERETDVL ENSBTAP00000029222/1-707 ---------- --------- bmy_15650T0/1-767 YSQADALKYV GIERETDVL BACU007135/1-754 YSQADALKYV GIERETDVL ENSP00000404658/1-747 YSQADALKYV GIERETDVL