KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:38:22 2014 Check: 00 .. Name: ENSP00000261590/1-1118 Len: 1139 Check: 5069 Weight: 1.00 Name: ENSBTAP00000029228/1-1114 Len: 1139 Check: 8292 Weight: 1.00 Name: ENSTTRP00000000820/1-1116 Len: 1139 Check: 1989 Weight: 1.00 Name: bmy_18625T0/1-1117 Len: 1139 Check: 7853 Weight: 1.00 Name: BACU001569/1-1109 Len: 1139 Check: 9821 Weight: 1.00 // 1 50 ENSP00000261590/1-1118 MARSPGRAYA LLLLLICFNV GSGLHLQ-VL STRNENKLLP KHPHLVRQKR ENSBTAP00000029228/1-1114 --------MT LFPVLTASPL AYYLNPQTAL HSRNESKLLP KHIHPVRQKR ENSTTRP00000000820/1-1116 --MALGAGGS LLLLLICFNF GDGLHLE-AL HSRNENKLLP KHTHSVRQKR bmy_18625T0/1-1117 --MALGAGGA LLLLLICFNF GDGLHLE-AL HSRNENKLLP KHTHSVRQKR BACU001569/1-1109 ---------- ---------- --------AL HSRNENKLLP KHTHSVRQKR 51 100 ENSP00000261590/1-1118 AWITAPVALR EGEDLSKKNP IAKIHSDLAE ERGLKITYKY TGKGITEPPF ENSBTAP00000029228/1-1114 AWITAPVALR EGEDLSRKNP IAKIHSDLAE EKKLKITYKY TGKGITEPPF ENSTTRP00000000820/1-1116 AWITAPVALR EGEDLSRKNP IAKIHSDVAE EKDLKITYKY TGKGITEPPF bmy_18625T0/1-1117 SWITAPVALR EGEDLSRKNP IAKIHSDHAE EKKLKITYKY TGKGITEPPF BACU001569/1-1109 SWLTAPVALR EGEDLSRKNP IAKIHSDLAE EKNLKITYKY TGKGITEPPL 101 150 ENSP00000261590/1-1118 GIFVFNKDTG ELNVTSILDR EETPFFLLTG YALDARGNNV EKPLELRIKV ENSBTAP00000029228/1-1114 GVFVFNKDTG ELNVTTILDR EETPFFLVTG YALDERGKNL EKPIELRIKV ENSTTRP00000000820/1-1116 GVFVFNKDTG LLNVTTILDR EETPFFLLMG YALDEKGNNL EKPIELRIKV bmy_18625T0/1-1117 GVFVFNKDTG ELNVTTILDR EETPFFLLIG YALDEKGNNL EKPIELRIKV BACU001569/1-1109 GVFVFNKDTG ELNVTTILDR EETPFFLLIG HGLDEKGNNL EKPIELRIKV 151 200 ENSP00000261590/1-1118 LDINDNEPVF TQDVFVGSVE ELSAAHTLVM KINATDADEP NTLNSKISYR ENSBTAP00000029228/1-1114 LDINDNEPVF TQDVFVGSVE ELSAANTLVM KINATDADEP NTLNSKISYR ENSTTRP00000000820/1-1116 LDINDNEPVF TQDVFVGSVE ELSAANTLVI KITATDADEP NTLNSKISYR bmy_18625T0/1-1117 LDINDNEPVF TQDVFVGSVE ELSAANTLVM KITATDADEP NTLNSKISYR BACU001569/1-1109 LDINDNEPVF TQDVFVGSVE ELSAANTLVM KITATDADEP NTLNSKISYR 201 250 ENSP00000261590/1-1118 IVSLEPAYPP VFYLNKDTGE IYTTSVTLDR EEHSSYTLTV EARDGNGEVT ENSBTAP00000029228/1-1114 IVSQEPANSP VFYLNKDTGE IYTTSITLDR EEYSSYTLIV EARDGNGQIT ENSTTRP00000000820/1-1116 IVSQEPASSP LFYLNKDTGE VYTTTIALDR EEHSSYTLTV EARDGNGQVT bmy_18625T0/1-1117 LVSQKPANSP LFYLNKDTGE VYTTSITLDR EEHSSYTLTV EARDGNGHVT BACU001569/1-1109 LVSQKPANSP LFYLNKDTGE VYTTSITLDR EEHSSYTLTV EARDGNGQVT 251 300 ENSP00000261590/1-1118 DKPVKQAQVQ IRILDVNDNI PVVENKVLEG MVEENQVNVE VTRIKVFDAD ENSBTAP00000029228/1-1114 DKPVKQAQVQ IRILDVNDNI PVVDRNVYEG SIEENKANVE VLRIKVSDAD ENSTTRP00000000820/1-1116 DKPVKQAQVQ IHILDVNDNI PVVENKVYEG IVEENKANVE VLRIKVFDAD bmy_18625T0/1-1117 DKPVKQAQVQ IRILDVNDNI PVVENKVYEG TVEENKANVE VLRIKVFDAD BACU001569/1-1109 DKPGKQAQVQ IRILDVNDNI PVVENKVYEG TVEENKANVE VLRIKVFDAD 301 350 ENSP00000261590/1-1118 EIGSDNWLAN FTFASGNEGG YFHIETDAQT NEGIVTLIKE VDYEEMKNLD ENSBTAP00000029228/1-1114 EVGSDNWLAN FTFASGNEGG YFHIETDTQT NEGIVTLIKE VDYETMKNLD ENSTTRP00000000820/1-1116 EVGSDNWLAN FTFASGNEGG YFHIETDTQT NEGIVTLIKE VDYEEMKNLD bmy_18625T0/1-1117 EVGSDNWLAN FTFASGNEGG YFHIETDTQT NEGIVTLIKE VDYEEMKNLD BACU001569/1-1109 EVGSDNWLAN FTFASGNEGG YFHIETDTQT NEGIVTLIKE VDYEEMKNLD 351 400 ENSP00000261590/1-1118 FSVIVANKAA FHKSIRSKYK PTPIPIKVKV KNVKEGIHFK SSVISIYVSE ENSBTAP00000029228/1-1114 LSIIVTNKAA FHKSIKDKYK PTSIPIKVKV KNVKEGIYFK SSTIQFHTSE ENSTTRP00000000820/1-1116 VNIIVTNKAA FHKSVKNKYK PTPIPIKVKV KNVKEGIYFK SSIIQFHTSE bmy_18625T0/1-1117 FSVIVTNKAA FHKSVKNKYK PTSIPIKVKV KNVKEGIYFK SSIIRFHTSE BACU001569/1-1109 FSIFVTNKAA FHKSVKNKYK PTSIPIKVKV KNVKEGIYFK SSIIRFPTSE 401 450 ENSP00000261590/1-1118 SMDRSSKGQI IGNFQAFDED TGLPAHARYV KLEDRDNWIS VDSVTSEIKL ENSBTAP00000029228/1-1114 SMEKLSQGQI LGKFQVFDED TGKVPNVKYA KFEDIDNWIS VNSATSEIKL ENSTTRP00000000820/1-1116 SVEKSSQSQI MGKFQAFDGD TGQVARVKYA KFEDIDNWIS VDSATSEIRL bmy_18625T0/1-1117 SMEKSSQCQI MGKFQAFDSD TGQVTRVKYA KFEDIDNWIS VNSATSEIRL BACU001569/1-1109 SVEKSSQSQI MGKFQAFDGD TGQVARVKYA KFEDIDNWIS VNSATSEIRL 451 500 ENSP00000261590/1-1118 AKLPDFESRY VQNGTYTVKI VAISEDYPRK TITGTVLINV EDINDNCPTL ENSBTAP00000029228/1-1114 VKIPDYESRY VQNGTYTAKI VAITEEYPRK TITGTIVINV EDVNDNCPTL ENSTTRP00000000820/1-1116 VKIPDYESRY VQNGTYTAKI LAVTEEHPRK TITGTISITV EDINDNCPTL bmy_18625T0/1-1117 VKIPDYESRY VQNGTYTAKI LAMTEEYPRK TITGTIIITV EDSNDNCPTL BACU001569/1-1109 VKIPDYESRY VQNGTYTAKI LAMTEEYPRK TITGTIIIMV EDINDNCPTL 501 550 ENSP00000261590/1-1118 IEPVQTICHD AEYVNVTAED LDGHPNSGPF SFSVIDKPPG MAEKWKIARQ ENSBTAP00000029228/1-1114 VEPVQTVCDY VPFVNVTAQD LDGPQNSWPF SFSIIDKPAG MAERWKIVRR ENSTTRP00000000820/1-1116 VDPVQTVCDD VQYVNVTAED LDGPQNSWPF SFSVIDKPAG MAERWKIVSR bmy_18625T0/1-1117 VDPVQTVCDD VQYVNVTAED LDGPQNSWPF HFSVIDKPAG MAERWNIVSR BACU001569/1-1109 VDPVQMVCDD VQYVNVTAED LDGPQNSWPF SFSVIDKPAG MAERWKIVSR 551 600 ENSP00000261590/1-1118 ESTSVLLQQS EKKLGRSEIQ FLISDNQGFS CPEKQVLTLT VCECLHGSGC ENSBTAP00000029228/1-1114 EDNNVLLQQT KRQHGTSEIH FQIADSQGFS CPEEQILRLT VCNCVEGSGC ENSTTRP00000000820/1-1116 ESTSMLLQQK ERTLGRSDIH LLIADSKGFS CPEKQVLKLT VCKCVEGGGC bmy_18625T0/1-1117 ESTSVLLQQK EGTLGRSDIR LLIADSKGFS CPEKQVLKLT VCKCVEGGGC BACU001569/1-1109 ESTSVLLQQK EPTLGRSDIR LLIADSKGFS CPEKQILKLT VCKCVEGGSC 601 650 ENSP00000261590/1-1118 REAQHDSYVG LGPAAIALMI LAFLLLLLVP LLLLMCHCGK GAKGFTPIPG ENSBTAP00000029228/1-1114 VNMWADSYVG LGPAAIALII LALLLLLLIP LLLLVCHCGK GAKGFTPIPG ENSTTRP00000000820/1-1116 VEMWIDSYVG LGPAAIALIM FALLLLLLVP LLLLKCRCGK GAKGFTPIPG bmy_18625T0/1-1117 VEMWYDSSVG LGPAAIAIIM FALLLLLLVP LLLLMCHCGK GAKRFTPIPG BACU001569/1-1109 VEMWYDSSVG LGPAAIALIM FALLLLLLVP LLLLMCHCGK GAKHFTPIPG 651 700 ENSP00000261590/1-1118 TIEMLHPWNN EGAPPEDKVV PSFLPVD-QG GSLVGRNGVG GM-AKEATMK ENSBTAP00000029228/1-1114 TIEMLHPWNN EGAPPEDKVV LPLLGADVRD GAAVGAGAGG GVTAKEAIVK ENSTTRP00000000820/1-1116 TIEMLHPWNN EGAPPEDKAV LPLLEADHRD CAAVG-GGAG AVTTKGATVK bmy_18625T0/1-1117 TIEMLHPWNN EGAPPEDKAV LPLLGADHRD SAAVG-GGTG AVTTKDATVK BACU001569/1-1109 TIEMLHPWNN EGAPPEDKAV VPLLGADHRD SAAVG-GGTG AVTTKDATVK 701 750 ENSP00000261590/1-1118 GSSSASIVKG QHEMSEMDGR WEEHRSLLSG RATQFTGATG AIMTTETTKT ENSBTAP00000029228/1-1114 GSSSASFSKG QQEMSEAEGR WEEYRSLVSG GATQVTGTTG AMVTSDTFRT ENSTTRP00000000820/1-1116 GSSSASFIKG QHEMSEVDGR WEEYRSFVSG GATQVTGTAG ALMTTETLRT bmy_18625T0/1-1117 GSSSASFIKG QHEMSEVDGR WEEHRSLVSG GATQVTGTTG ALMTTETLRT BACU001569/1-1109 GSSSAPFIKG QHEMSEVDGR WEEYRSLVSG GATQVTGTTG ALMTTETLRT 751 800 ENSP00000261590/1-1118 ARATGASRDM AGAQAAAVAL NEEFLRNYFT DKAASYTEED ENHTAKDCLL ENSBTAP00000029228/1-1114 TRATGAAREV AGARAGAVAV NEEFLRSYFT EKAASYIGED DMHTAKDCLL ENSTTRP00000000820/1-1116 TRATVASREV AGARAAAVAV NEEFLRSYFT EKAASYAEED DIHTAKDCLL bmy_18625T0/1-1117 TRAAVASKEV AGARAAAVAV NEGFLRSYFT EKAASYTEED DIHTAKDCLL BACU001569/1-1109 TRAAAASREV AGARAAAVAV NEEFLRSYFT EKAASYTEED DIHAAKDCLL 801 850 ENSP00000261590/1-1118 VYSQEETESL NASIGCCSFI EGELDDRFLD DLGLKFKTLA EVCLGQKIDI ENSBTAP00000029228/1-1114 VYSQEDTESL RGSIGCCSFI EGELDDRFLD DLGLKFKTLA EVCLGRKIEM ENSTTRP00000000820/1-1116 VYSQEETDSL QGSIGCCSFI EGELDDGFLD DLGWKFKTLA EVCWGQKIEM bmy_18625T0/1-1117 VYSQEETDSL QGSIGCCSFI EGELDDSFLD DLGLKFKTLA EVCLGQKIEM BACU001569/1-1109 VYSQEETDSL QGSIGCCSFI EGELDDSFLD DLGLKFKTLA EVCLGQNIEM 851 900 ENSP00000261590/1-1118 NKEIEQRQKP ATETSMNTAS HSLCEQTMVN SENTYSSGSS FPVPKSLQEA ENSBTAP00000029228/1-1114 DAEIQQRAKP AREADRKVVS QSLYEQTRLN SENAYASGSS FQGPKPLHEA ENSTTRP00000000820/1-1116 DMEIEQRPKP MRETDVKAAS HSFYEQTRVN SEYTYPSGSS FQVPKPLHEA bmy_18625T0/1-1117 DMEIEQRPKP MRETDMKAAS HSFYEQTRVN SENTYPSGSS FQVPKPLHEA BACU001569/1-1109 DMEIEQRPKP VRETDMKAAS HSFYEQTRVN SENTYPSGSS FQVPKPLREA 901 950 ENSP00000261590/1-1118 NAEKVTQEIV TERSV-SSRQ AQKVATPLPD PMASRNVIAT ETSYVTGSTM ENSBTAP00000029228/1-1114 DTEKVTQEIV TEKSVISSKQ AQKVAAPLPD TLASGSVIVT ETSYATGATG ENSTTRP00000000820/1-1116 NTEKVTQEIV SEKSV-SSRQ AQKVAAPLSD PLASGNVIVT ETSYTTGSTV bmy_18625T0/1-1117 NTEKVTQEIV TEKSV-SSRQ AQKVAAPLSD PLASGNVIVT ETSYATGSTV BACU001569/1-1109 NTEKVTQEIV TEKSV-SSRQ AQKVAAPLSD PLASGNVIVT ETSYATGSTV 951 1000 ENSP00000261590/1-1118 PPTTVILGPS QPQSLIVTER VYAPASTLVD QPYANEGTVV VTERVIQPHG ENSBTAP00000029228/1-1114 PPSTVVLGPQ QSQGLIVTER VYAPASTLGN QQYASEGHVV VTERVIQPHG ENSTTRP00000000820/1-1116 PLSTVVLDPR QSEGLMVTER VYAPASLLGE QQYASEGGIM VTERVIQPHG bmy_18625T0/1-1117 PLSSAVLDPR QSEGLMVTER VYAPASPLRE QQYASDGSIM VTERVIQPHG BACU001569/1-1109 PLSSVVLDPR RSEGLMVTER VYAPAAPLGE QQYASEGSIV VTERVIQPHG 1001 1050 ENSP00000261590/1-1118 GGSNPLEGTQ HLQDVPYVMV RERESFLAPS SGVQPTLAMP NIAVGQNVTV ENSBTAP00000029228/1-1114 GTSGLLEDAP PLPDAHYVMV QERERFLTPS SSLQPPLAAP SVALGQNVTV ENSTTRP00000000820/1-1116 GSPGPLEGTL HLPDAHYVMV RERERFLTPS SRVQPPLAAH SVAVGQNVTV bmy_18625T0/1-1117 GSPGPLEGTP RLPDAHYVMV RERERFLAPS SSVQPPLAAR SVAVGQNVTV BACU001569/1-1109 GSPGPLEGTP HLPDAHYVMV RERERFLAPS SSVQPPLAAH SVAVGQNVTV 1051 1100 ENSP00000261590/1-1118 TE-------- ---------R VLAPASTLQS SYQIPTENSM TARNTTVSGA ENSBTAP00000029228/1-1114 TE-------- ---------R VLTPASALQS SYQIPAETSV MSRKTVASAA ENSTTRP00000000820/1-1116 ME-------- ---------R VLTPASTLQS NYQIPSETSV MAKKTVVSGA bmy_18625T0/1-1117 ME-------- ---------R VLTPASTLQS NYQIPAETSV MAKKTVVSGA BACU001569/1-1109 TEXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXPAETSV MAKKTVVSGA 1101 1150 ENSP00000261590/1-1118 GVPGPLPDFG LEESGHSNST ITTSSTRVTK HSTVQHSYS ENSBTAP00000029228/1-1114 GVPGSLPDSG LEESSHSNYT ITTSSTRVSK QSTVQQSFS ENSTTRP00000000820/1-1116 GVPGPPPDSG FKESSHSNYT ITTSSTRVSK PSTVQQ-FS bmy_18625T0/1-1117 GVPGPLPDSG FEESSHSNYT ITTSSTRVSK PSTVQQSFS BACU001569/1-1109 GVPGPLPDSG FEESSHSNYT ITTSSTRVSK PSTVQQSFS