KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:38:23 2014 Check: 00 .. Name: ENSP00000360757/1-431 Len: 488 Check: 7299 Weight: 1.00 Name: ENSBTAP00000029233/1-411 Len: 488 Check: 5531 Weight: 1.00 Name: bmy_14814T0/1-296 Len: 488 Check: 3330 Weight: 1.00 Name: BACU016128/1-487 Len: 488 Check: 5564 Weight: 1.00 // 1 50 ENSP00000360757/1-431 ---------- ---------- ---------M RRLRRLAHLV LFCPFS---- ENSBTAP00000029233/1-411 ---------- ---------- ---------- ---------- ---------- bmy_14814T0/1-296 ---------- ---------- ---------- ---------- ---------- BACU016128/1-487 MLQGGPPASG AEGGPTPPRA GPAPAGPEAT PSPLRFPRLK RPGPPQAPGA 51 100 ENSP00000360757/1-431 ---------- ---------- KRLQGRLPGL RVRCIFLAWL GVFAGSWLVY ENSBTAP00000029233/1-411 ---------- ---------- ---QGRLPGL RVKYVFLVWL GVLAGSWLAY bmy_14814T0/1-296 ---------- ---------- ------MRGV RS-------- ---AACWPA- BACU016128/1-487 LRGPPARSPS PAGRPRESVL GKQEGRLPGL RVKYVFLVWL GVFAGSWLAY 101 150 ENSP00000360757/1-431 VHYSSYSERC RGHVCQVVIC DQYRKGIISG SVCQDLCELH MVEWRTCLSV ENSBTAP00000029233/1-411 VHYSSYAELC RGHVCRVVIC DQYRKGIISG SICQDLCNLQ QVEWRTCLSS bmy_14814T0/1-296 ---------- ---------- -VRRPGL--- ---------- -------LSP BACU016128/1-487 VHYSSYAGLC RGHICQVVIA -LATKGLGTM ATVTHIQEFT PHSLQTPRLP 151 200 ENSP00000360757/1-431 APGQ----QV YSGLWRDKDV TIKCGIEETL DSKARSDAAP RRELVLFDKP ENSBTAP00000029233/1-411 VPGQ----QV YSGLWQGKEV TIKCGLEESL SWKAGADVAP RRELVLFDKP bmy_14814T0/1-296 APKP------ ---------- ---------- ---------- ---------- BACU016128/1-487 PPRPHLPAQV YSGLWQGKEV TIKCGIEESL DSKAGADMAP RRELVLFDKP 201 250 ENSP00000360757/1-431 TRGTSIKEFR EMTLSFLKAN LGDLPSLPAL VGQVLLMADF NKDNRVSLAE ENSBTAP00000029233/1-411 TRGTSIKEFR EMTLSFLKAN LGDLPSLPAL VGQVLLMADF NKDSRVSLAE bmy_14814T0/1-296 ---------- -------QAN LGDLPSLPAL VGQVLLMADF NKDHRVSLAE BACU016128/1-487 TRGTSIKEFQ EMTLSFLKAN LGDLPSLPAL VGQVLLMADF NKDHRVSLAE 251 300 ENSP00000360757/1-431 AKSVWALLQR NEFLLLLSLQ EKEHASRLLG YCGDLYLTEG VPHGAWHAAA ENSBTAP00000029233/1-411 ARSLWALLQR NEFLLLLSLQ GRGHAAPLLG HCGDLYVTEG VPRSSGPAAA bmy_14814T0/1-296 AKSVWALLQR NEFLLLLSLQ EKEHTSRLLG YCGDLYLTEG VPHSSWPGAA BACU016128/1-487 AKSVWALLQR NEFLLLLSLQ EKEHASRLLG YCGDLYITEG VPHSSWPGAA 301 350 ENSP00000360757/1-431 LPPLLRPLLP PALQGALQQW LGPAWPWRAK IAIGLLEFVE ELFHGSYGTF ENSBTAP00000029233/1-411 LPALLRPLLP PALHGALQQW LGPAWPWRAK IAIGLLEFVE ELFHGAYGTF bmy_14814T0/1-296 LPPLLRPLLP PALHGALQQW LGPAWPWRAK IAIGLLEFVE ELFHGAYGTF BACU016128/1-487 LPPLLRPLLP PALHGALQQW LGPAWPWRAK IAIGLLEFVE ELFHGAYGTF 351 400 ENSP00000360757/1-431 YMCETTLANV GYTATYDFKM ADLQQVAPEA TVRRFLQGRR CEHSTDCTYG ENSBTAP00000029233/1-411 YMCETTLANV GYTAKYDFRM ADLQQVAPEA AVRRFLRGRH CERSADCTYG bmy_14814T0/1-296 YMCETTLANV GYTAKYDFRM ADLQQVAPEA AVRRFLRGRH CEHSADCTYG BACU016128/1-487 YMCETTLANV GYTAKYDFRM ADLQQVAPEA AVRRFLRGRR CEHSADCTYG 401 450 ENSP00000360757/1-431 RDCRAPCDRL MRQCKGDLIQ PNLAKVCALL RGYLLPGAPA DLREELGTQL ENSBTAP00000029233/1-411 HDCRAPCDTL LRQCKGDLVQ PNLAKVCELL RDYLLPGAPA GLRAELGRQL bmy_14814T0/1-296 RDCRAPCDTL LRQCKGDLVQ PNLAKVCELL RDYLLPGAPG GLRAELGKQL BACU016128/1-487 RDCRAPCDTL LRQCKGDLVQ PNLAKVCELL RDYLLPGAPA GLRAELGKQL 451 500 ENSP00000360757/1-431 RTCTTLSGLA SQVEAHHSLV LSHLKTLLWK KISNTKYS ENSBTAP00000029233/1-411 RTCTTLSGLA SQVEAHHSLV LSHLKTLLWK EISNTKYT bmy_14814T0/1-296 RTCATLSGLA SQVEAHHSLV LSHLKTLLWR EISDTKYA BACU016128/1-487 RTCTTLSGLA SQVEAYHSLV LSHLKTLLWK QISNTKYA