KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:38:24 2014 Check: 00 .. Name: ENSP00000251535/1-663 Len: 705 Check: 8200 Weight: 1.00 Name: ENSBTAP00000029240/1-663 Len: 705 Check: 1470 Weight: 1.00 Name: ENSTTRP00000008234/1-663 Len: 705 Check: 2917 Weight: 1.00 Name: bmy_01781T0/1-685 Len: 705 Check: 2107 Weight: 1.00 Name: BACU001275/1-679 Len: 705 Check: 1669 Weight: 1.00 // 1 50 ENSP00000251535/1-663 MGRYRIRVAT GAWLFSGS-- ---------- --------YN RVQLWLVGTR ENSBTAP00000029240/1-663 MGRYRILVAT GASLFAGS-- ---------- --------HN RVQLWLVGAR ENSTTRP00000008234/1-663 MGRYRIRVAT GAAFFAGS-- ---------- --------HD RVQLWLVGAR bmy_01781T0/1-685 MGRYRIRVAT GAALFAGS-- ---------- --------HD RVQLWLVGAR BACU001275/1-679 MGRYRIRVAT GAALFAGSHD RVQLWLGGXX XXXXXGAAHD RVQLWLVGAR 51 100 ENSP00000251535/1-663 GEAELELQLR PARGEEEEFD HDVAEDLGLL QFVRLRKHHW LVDDAWFCDR ENSBTAP00000029240/1-663 GETELELQLR PARGQKEEFE HEVPEDLGPL QFVKLRKHHS LVEDAWFCDR ENSTTRP00000008234/1-663 GETDLELQLL PARGQEKEFE HDIPEDLGPL QFVKLRKHHS LVDNAWFCDH bmy_01781T0/1-685 GETELELQLL PARGQEEEFE HDIPEDLGPL QFVKLRKHHS LVDNAWFCDH BACU001275/1-679 GETELELQLL PARGQEEEFE HDIPEDLGPL QFVKLRKHHS LVDNAWFCDH 101 150 ENSP00000251535/1-663 ITVQGPGACA EVAFPCYRWV QGEDIL---- -----SLPEG TARLPGDNAL ENSBTAP00000029240/1-663 ITVRGPGACE EAAFPCYRWV QGDGVL---- -----CLPEA TARLAGNNAL ENSTTRP00000008234/1-663 ITVQGPVAFQ EATFPCYRWV QADSVL---- -----CLPEG TARLAGNNAL bmy_01781T0/1-685 ITVQGPVAFE EAAFPCYCWV QADSVLLPGR KQRIGRVPET SREGTQRKTS BACU001275/1-679 ITVQGPVAFE EAAFPCYCWV QADSVL---- -----CLPEG T----GNNAL 151 200 ENSP00000251535/1-663 DMFQKHREKE LKDRQQIYC- ---------- --WATWKEGL PLTIAADRKD ENSBTAP00000029240/1-663 DVFQRHREKE LKERHKIYR- ---------- --WATWKEGL PLTIAAGSED ENSTTRP00000008234/1-663 DVFQKHREKE LKERRQIYC- ---------- --WATWKEGL PLTIAAGCED bmy_01781T0/1-685 DILVTTHLQG LSVVPPITDL DTLPEALSPS PSWATWKEGL PLTMAAGCED BACU001275/1-679 DVFQKHREQE LKERRQIYC- ---------- --WATWKEGL PLTMAAGCED 201 250 ENSP00000251535/1-663 DLPPNMRFHE EKRLDFEWTL KAGALEMALK RVYTLLSSWN CLEDFDQIFW ENSBTAP00000029240/1-663 DLPANMRFHE EKRLDFEWTL KAGALEMVLK RVYTLLSSWT SLEDFDLIFW ENSTTRP00000008234/1-663 DLPANMRFHE EKRLDFEGTL KAGALEMVLK HVYTLLSSWN CFEDFDHIFW bmy_01781T0/1-685 DLPANMRFHE EKRLDFEWTL KAGALEMVLK RVYTLLGSWN HVENFDHIFW BACU001275/1-679 DLPANMRFHE EKRLDFEWTL KAGALGMVLK RVYTLLRSWN RVEDFDHIFW 251 300 ENSP00000251535/1-663 GQKSALAEKV RQCWQDDELF SYQFLNGANP MLLRRSTSLP SRLVLPSGME ENSBTAP00000029240/1-663 GQKSPLAEKV HQCWRDDELF GYQFLNGANP MLLRRCTSLP SRLVLPSGME ENSTTRP00000008234/1-663 GQKNTLAEKV RQRWQDDELF GYQFLNGTNP MLLRRCTSLP SRLVLPSGME bmy_01781T0/1-685 GQKSILAEKV RQRWQDDELF GYQFLNGANP MLLRRCTSLP SRLVLPSGME BACU001275/1-679 GQKSILAEKV RQRWQDDELF GYQFLNGANP MLLRRCTSLP SRLVLPSGME 301 350 ENSP00000251535/1-663 ELQAQLEKEL QNGSLFEADF ILLDGIPANV IRGEKQYLAA PLVMLKMEPN ENSBTAP00000029240/1-663 ELRAQLEREL QNGSLFEADF ILLDGIPANV IRGEKQYLAA PLVMLKMDPS ENSTTRP00000008234/1-663 ELRTQLEKEL QNSSLFEADF ILLDGIPANV IRGEKQYLAA PLVMLKMDTS bmy_01781T0/1-685 ELRAQLEKEL QNSSLFEADF ILLDGIPANV IRGEKQYLAA PLVMLKMDTS BACU001275/1-679 ELRAQLEKEL QNSSLFEADF ILLDGIPANV IQGEKQYLAA PLVMLKMDTS 351 400 ENSP00000251535/1-663 GKLQPMVIQI QPPNPSSPTP TLFLPSDPPL AWLLAKSWVR NSDFQLHEIQ ENSBTAP00000029240/1-663 GKLLPMVIQI QPPSPISPTP PLFLPSDPPL AWLLAKTWVR NSDFQLHQLQ ENSTTRP00000008234/1-663 GKLLPMVIQI QPPSPSSPTP PLFLPSDPPL AWLLAKSWVR NSDFQLHQLQ bmy_01781T0/1-685 GKLLPMVIQI QPPSPSSPTP PLFLPSDPPL AWLLAKSWVR NSDFQLHQLQ BACU001275/1-679 GKLLPMVIQI QPPSPSSPTP PLFLPSDPPL AWLLAKSWVR NSDFQLHQLQ 401 450 ENSP00000251535/1-663 YHLLNTHLVA EVIAVATMRC LPGLHPIFKF LIPHIRYTME INTRARTQLI ENSBTAP00000029240/1-663 YHLLNTHLLA EVIAVATMRC LPGLHPVFKL LMPHIRYTME INTRARTQLI ENSTTRP00000008234/1-663 YHLLNTHLLA EVIAVATMRC LPGLHPVFKL LIPHIRYTME INTRARTQLL bmy_01781T0/1-685 YHLLNTHLLA EVIAVATMRC LPGLHPVFKL LIPHIRYTIE INTRARTQLI BACU001275/1-679 YHLLNTHMLA EVIAVATMRC LPGLHPVFKL LIPHIRYTIE INTRARTQLI 451 500 ENSP00000251535/1-663 SDGGIFDKAV STGGGGHVQL LRRAAAQLTY CSLCPPDDLA DRGLLGLPGA ENSBTAP00000029240/1-663 SDGGIFDKAV STGGGGHVHL LRRALAQLTY RSLCPLDDLA DRRLLGTPGA ENSTTRP00000008234/1-663 PDGGIFDKAV STGGGGHVHL LRRALAQLTY CSLCPPNNLA DRGLLGTPGA bmy_01781T0/1-685 SDGGIFDKAV STGGGGHVHL LHRALAQLTY CSLCPPNNLA DRGLLGTPGA BACU001275/1-679 SDGGVFDKAV STGGGGHVHL LHRALAQLTY CSLCPPNNLA DRGLLGTPGA 501 550 ENSP00000251535/1-663 LYAHDALRLW EIIARYVEGI VHLFYQRDDI VKGDPELQAW CREITEVGLC ENSBTAP00000029240/1-663 LYACDALRLW EITARYVEGI VHLFYHGDDV VKGDPELQAW CREITEVGLR ENSTTRP00000008234/1-663 LYACDALQLW EITARYVEGI IHLFYRGDDV VRGDPELQAW CREITEVGLC bmy_01781T0/1-685 LYAHDALQLW EITARYVEGI IHLFYRGDDV VRGDPELQAW CREITEVGLC BACU001275/1-679 LYAHDALQLW EITARYVEGI IHLFYSGDDV VRGDPELQAW CREITEVGLC 551 600 ENSP00000251535/1-663 QAQDRGFPVS FQSQSQLCHF LTMCVFTCTA QHAAINQGQL DWYAWVPNAP ENSBTAP00000029240/1-663 QAQERGFPVS FQSQNQLCHF LTMCVFTCTA QHGAINQGQL DWYAWVPNAP ENSTTRP00000008234/1-663 QAQNRGFPIS FQSQNQLCHF LTMCVFTCTA QHGAINQGQL DWYAWVPNAP bmy_01781T0/1-685 QAQDRGFPIS FQSQNQLCHF LTMCVFTCTA QHGAINQGQL DWYAWVPNAP BACU001275/1-679 QAQDRGFPIS FQSQNQLCHF LTMCVFTCTA QHGAINQGQL DWYAWVPNAP 601 650 ENSP00000251535/1-663 CTMRMPPPTT KEDVTMATVM GSLPDVRQAC LQMAISWHLS RRQPDMVPLG ENSBTAP00000029240/1-663 CTMRMPPPTT KEDVTMATVM GSLPDVRQAC LQMAITWHLG RRQPDMVPLG ENSTTRP00000008234/1-663 CTMRMPPPTT KEDVTVATVM GSLPDVRQAC LQMVVTWHLG RRQPDMVPLG bmy_01781T0/1-685 CTMRMPPPTT KEDVTMATVM GSLPDVRQAC LQMVITWHLG RRQPDMVPLG BACU001275/1-679 CTMRMPPPTT KEDVTMATVM GSLPDVRQAC LQMVITWHLG RRQPDMVPLG 651 700 ENSP00000251535/1-663 HHKEKYFSGP KPKAVLNQFR TDLEKLEKEI TARNEQLDWP YEYLKPSCIE ENSBTAP00000029240/1-663 HHKEKYFSDP KAKSVLNQFQ TDLENLEREI TARNEQLDLP YEYLKPSHIE ENSTTRP00000008234/1-663 HHKEKYFSDP KAKSVLNQFQ TDLENLEREI TARNEQLDLP YEYLKPSLIE bmy_01781T0/1-685 HHKEKYFSDP KAKSVLNQFQ TDLENLEREI TARNEQLDLP YEYLKPSHIE BACU001275/1-679 HHKEKYFSDP KAKSVLNQFQ TDLENLEREI TARNEQLDLP YEYLKPSHIE 701 750 ENSP00000251535/1-663 NSVTI ENSBTAP00000029240/1-663 NSVTI ENSTTRP00000008234/1-663 NSITI bmy_01781T0/1-685 NSITI BACU001275/1-679 NSITI