KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:38:25 2014 Check: 00 .. Name: bmy_19559T0/1-478 Len: 876 Check: 6428 Weight: 1.00 Name: ENSTTRP00000002716/1-807 Len: 876 Check: 6279 Weight: 1.00 Name: ENSP00000368994/1-818 Len: 876 Check: 2356 Weight: 1.00 Name: BACU005868/1-592 Len: 876 Check: 4431 Weight: 1.00 Name: ENSBTAP00000029246/1-814 Len: 876 Check: 7468 Weight: 1.00 // 1 50 bmy_19559T0/1-478 ---------M SIAIQY---- ---------- -HCGTSSNPS RPACRELYLP ENSTTRP00000002716/1-807 -MKKQFNRMR QLANQTVGRA EKTEVLSEDL LQVEKRLELV KQVSHSTHKK ENSP00000368994/1-818 -MKKQFNRMR QLANQTVGRA EKTEVLSEDL LQVEKRLELV KQVSHSTHKK BACU005868/1-592 ---------- DISLHFLFRA EKTEVLSEDL LQVEKRLELV KQVSHSTHKK ENSBTAP00000029246/1-814 LKKEYLEAEK DMCLHFPFRA EKTEVLSEDL LQVEKRLELV KQVSHSTHKK 51 100 bmy_19559T0/1-478 PSACPTDST- ---------- PVASPVQVL- -------RDT YL-KMLKLCG ENSTTRP00000002716/1-807 LTACLQGQQG AEADKRSKKL PLTTLAQCLV EGSALLGDDT LLGKMLKLCG ENSP00000368994/1-818 LTACLQGQQG AEADKRSKKL PLTTLAQCLM EGSAILGDDT LLGKMLKLCG BACU005868/1-592 LTACLQGQQG AEADKRSKKL PLTTLAQCLV EGSAVLGDDT LLGKMLKLCG ENSBTAP00000029246/1-814 LTACLQGQQG AEADKRSKKL PLTTLAQCLM EGSAILGDDT LLGKMLKLCG 101 150 bmy_19559T0/1-478 EAEDKLAQEL IHFELQVERD VIEPLFLLAE V------RSR R--------- ENSTTRP00000002716/1-807 EAEDKLAQGL IHFELQVERD VIEPLFLLAE VEIPNIQKQR KHLAKLVLDM ENSP00000368994/1-818 ETEDKLAQEL IHFELQVERD VIEPLFLLAE VEIPNIQKQR KHLAKLVLDM BACU005868/1-592 EAEDKLAQEL IHFELQVERD VIEPLFLLAE VEIPNIQKQR KHLAKLVLDM ENSBTAP00000029246/1-814 ETEDKLAQEL IHFELQVERD VIEPLFLLAE VEIPNIQKQR KHLAKLVLDM 151 200 bmy_19559T0/1-478 -EAGPAWQQT SKSSGLSSSL QPAGAKADAL REEMEEAANR VEICRDQLSA ENSTTRP00000002716/1-807 DSSRTRWQQT SKSSGLSSSL QPAGAKADAL REEMEESANR VEICRDQLSA ENSP00000368994/1-818 DSSRTRWQQT SKSSGLSSSL QPAGAKADAL REEMEEAANR VEICRDQLSA BACU005868/1-592 DSSRTRWQQT SKSSGLSSSL QPAGAKADAL REEMEEAANR VEICRDQLSA ENSBTAP00000029246/1-814 DSSRTRWQQT SKSSGLSSSS QPAGAKADAL REEMEEAANR VEICRDQLSA 201 250 bmy_19559T0/1-478 DMYSFVAKEI DYANYFQTTS MCGHSPATEA KETHAIIAGG WRREQGTVQG ENSTTRP00000002716/1-807 DMYSFVAKEI DYANYFQM-- ---------- ---------- ---------- ENSP00000368994/1-818 DMYSFVAKEI DYANYFQT-- ---------- ---------- ---------- BACU005868/1-592 DMYSFVAKEI DYANYFQT-- ---------- ---------- ---------- ENSBTAP00000029246/1-814 DMYSFVAKEI DYANYFQT-- ---------- ---------- ---------- 251 300 bmy_19559T0/1-478 TPVARQPVSP TLQQRVMLAL VFPQLIEAQA EYHRKSLMLL QAVLPQIKAQ ENSTTRP00000002716/1-807 ---------- ---------- ----LIEVQA EYHRKSLTLL QAVLPQIKAQ ENSP00000368994/1-818 ---------- ---------- ----LIEVQA EYHRKSLTLL QAVLPQIKAQ BACU005868/1-592 ---------- ---------- ----LIEVQA EYHRKSLTLL QAVLPQIKAQ ENSBTAP00000029246/1-814 ---------- ---------- ----LIEVQA EYHRKSLTLL QAVLPQIKAQ 301 350 bmy_19559T0/1-478 QEAWVEKPSF GKPLEEHLLI SSREIAFPIE ACVTMLLECG MQEEGLFRVA ENSTTRP00000002716/1-807 QEAWVEKPSF GKPLEEHLLI SGREIAFPIE ACVTMLLECG MQEEGLFRVA ENSP00000368994/1-818 QEAWVEKPSF GKPLEEHLTI SGREIAFPIE ACVTMLLECG MQEEGLFRVA BACU005868/1-592 QEAWVEKPSF GKALEEHLLI SGREIAFPIE ACVTMLLECG MQEEGLFRVA ENSBTAP00000029246/1-814 QEAWVEKPSF GKPLEEHLTI SGREIAFPIE ACVTMLLECG MQEEGLFRVA 351 400 bmy_19559T0/1-478 PSASKLKKLK AALDCCVVDV QECSADPHAI AVFLEKRFFE HKAFLT---- ENSTTRP00000002716/1-807 PSASKLKKLK AALDCCVVDV QECSADPHAI AGALKSYLRE LPEPLMTFEL ENSP00000368994/1-818 PSASKLKKLK AALDCCVVDV QEYSADPHAI AGALKSYLRE LPEPLMTFEL BACU005868/1-592 PSASKLKKLK AALDCCVVDV QECSADPHAI AGALKSYLRE LPEPLMTFEL ENSBTAP00000029246/1-814 PSASKLKKLK AALDCCVVDV QECSADPHAI AGALKSYLRE LPEPLMTFEL 401 450 bmy_19559T0/1-478 ----VSALSI QEQDKRLQAL WNACEKLPKA NYNNIR---- ---------- ENSTTRP00000002716/1-807 YDEWIQASNI QEQDTRLQAL WNACEKLPKA NYNNIRYLIK FLSKLSEYQD ENSP00000368994/1-818 YDEWIQASNV QEQDKKLQAL WNACEKLPKA NHNNIRYLIK FLSKLSEYQD BACU005868/1-592 YDEWIQASNI QEQDKRLQAL WNACEKLPKA NYNNIRYLIK FLSKLSEYQD ENSBTAP00000029246/1-814 YDEWIQASNI QDQDKRLQAL WNACEKLPKA NHNNIRYLIK FLSKLSEYQD 451 500 bmy_19559T0/1-478 ---------- ---------- ---------- -------KGV ADPQTMCTHS ENSTTRP00000002716/1-807 VNKMTPSNMA IVLGPNLLWP QAEGNITEMM TTVSLQIVGV IEPIIQHADW ENSP00000368994/1-818 VNKMTPSNMA IVLGPNLLWP QAEGNITEMM TTVSLQIVGI IEPIIQHADW BACU005868/1-592 VNKMTPSNMA IVLGPNLLWP QAEGNITEMM TTVSLQIVGI IEPIIQHADW ENSBTAP00000029246/1-814 VNKMTPSNMA IVLGPNLLWP QAEGNITEMM TTVSLQIVGI IEPIIQHADW 501 550 bmy_19559T0/1-478 VFPAEIEFNI TGNYGSPVHV NHNANYSSMP SPDMDPADRR QPEQARRPLS ENSTTRP00000002716/1-807 FFPGXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000368994/1-818 FFPGEIEFNI TGNYGSPVHV NHNANYSSMP SPDMDPADRR QPEQARRPLS BACU005868/1-592 FFPGEIEFNI TGNYGSPVHV NHNANYSSMP SPDMDPADRR QPEQARRPLS ENSBTAP00000029246/1-814 FFPGEIEFNI TGNYGSPVHV NHNANYSSMP SPDMDPADRR QPEQARRPLS 551 600 bmy_19559T0/1-478 VATDNMMLEF YKKDGY---- ---------- ---------- ---------- ENSTTRP00000002716/1-807 XXXXXXXXXX XXXXXXXSLA SMGVRVMDTS WVARRGSSAG RKASCAPPTM ENSP00000368994/1-818 VATDNMMLEF YKKDGLRKIQ SMGVRVMDTN WVARRGSSAG RKVSCAPPSM BACU005868/1-592 VATDNMMLEF YKKDG----- ---------- ---------- ---------- ENSBTAP00000029246/1-814 VATDNMMLEF YKKDGLRKIQ SMGVRVMDTS WVARRGSSAG RKASCAPPAM 601 650 bmy_19559T0/1-478 ---------- ---------- ---------- ---------- -ELASLSQCW ENSTTRP00000002716/1-807 QPPAPSAELA PPLPSPLPEQ PPDGPAVPAL SPSGLGLQPG AERISTSKSK ENSP00000368994/1-818 QPPAPPAELA APLPSPLPEQ PLDSPAAPAL SPSGLGLQPG PERTSTTKSK BACU005868/1-592 ---------- ---------- ---------- ---------- -----TSKSK ENSBTAP00000029246/1-814 QPPAPPAELA PPLPSPLPEQ SPEGPMVPAL SPSGLGLQPA AERTSASKSK 651 700 bmy_19559T0/1-478 GLWDG----- ------GIDS DGM------- ---------- ---------- ENSTTRP00000002716/1-807 ELSPGSGQKG SPGSSQGTPS AAMQPGA--- -------SPS PLPTDQSPHT ENSP00000368994/1-818 ELSPGSAQKG SPGSSQGTAC AGTQPGAQPG AQPGASPSPS QPPADQSPHT BACU005868/1-592 ELSPGSGQKG SPGSSQGTPS AGMQPGV--- -------SPS QLPADQSPHT ENSBTAP00000029246/1-814 ELSPGSGQKG SPGSSQGTPS AGSQPGAQSG T------SPG QPPADQSPHT 701 750 bmy_19559T0/1-478 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002716/1-807 LRKVSKKLAP IPPKVPFGQP GSLPETPAGQ PSPLSLSPTP PSTPSPYGLS ENSP00000368994/1-818 LRKVSKKLAP IPPKVPFGQP GAMADQSAGQ PSPVSLSPTP PSTPSPYGLS BACU005868/1-592 LRK------- ---------- ---------- ---------- ---------- ENSBTAP00000029246/1-814 LRKVSKKLAP IPPKVPFGQP GPLPEQPAGQ PSPLSLSPTP PSTPSPYGLS 751 800 bmy_19559T0/1-478 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002716/1-807 CPPGYSLASG QLSPAAAAPP LASPSGFVGA LSKSRPTPKP RQRPTLPPPE ENSP00000368994/1-818 YPQGYSLASG QLSPAA-APP LASPSVFTST LSKSRPTPKP RQRPTLPPPQ BACU005868/1-592 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029246/1-814 YPPGYSLASG QLSPAAPAPP LASPSGFTGA LSKSRPTPKP RQRPTLPPPQ 801 850 bmy_19559T0/1-478 ---------- ---------- ---------T ERLHLPAAX- ---------- ENSTTRP00000002716/1-807 PPAVSLTASS PQS-EQPALD GVSPGESMST DLVHLDVPSI HAELGSALRL ENSP00000368994/1-818 PPTVNLSASS PQSTEAPMLD GMSPGESMST DLVHFDIPSI HIELGSTLRL BACU005868/1-592 ---------- ---------- ---------- DLVHFDVPSI HVELGSALRL ENSBTAP00000029246/1-814 PPTVSLAASS PQSSEHPVLD GVSPGESMST DLVHFDVPSI HVELGSALRL 851 900 bmy_19559T0/1-478 ---------- ---------- ------ ENSTTRP00000002716/1-807 GPRELVRRRS VAEKRDP-AE SESTAL ENSP00000368994/1-818 SPLEHMRRHS VTDKRDSEEE SESTAL BACU005868/1-592 GPREHVRRHS VAEKRDS-EE SESTAL ENSBTAP00000029246/1-814 GPLEHMRRHS VAEKRDSEEE SESTAL