KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:38:26 2014 Check: 00 .. Name: ENSTTRP00000010012/1-458 Len: 500 Check: 6779 Weight: 1.00 Name: ENSBTAP00000029254/1-334 Len: 500 Check: 7497 Weight: 1.00 Name: ENSP00000396620/1-354 Len: 500 Check: 2976 Weight: 1.00 Name: bmy_19249T0/1-377 Len: 500 Check: 2023 Weight: 1.00 Name: BACU000389/1-439 Len: 500 Check: 1093 Weight: 1.00 // 1 50 ENSTTRP00000010012/1-458 --------MS TEGGFGGASS SDAQQSLQSF WPRVMEEIRN LTVKDFRVQE ENSBTAP00000029254/1-334 --------MS TEGGFGGAGS SDAQQSLQSF WPRVMEEIRN LTVKDFRVQE ENSP00000396620/1-354 --------MS TEGGFGGTSS SDAQQSLQSF WPRVMEEIRN LTVKDFRVQE bmy_19249T0/1-377 MCLFLVVKMS TEGGFGGASS SDAQQSLQSF WPRVMEEIRN LTVKDFRVQE BACU000389/1-439 --------MS TEGGFGGASS SDAQQSLQSF WPRVMEEIRN LTVKDFRVQE 51 100 ENSTTRP00000010012/1-458 LPLARIKKIM KLDEDVK--- ---------- ---------- ---------- ENSBTAP00000029254/1-334 LPLARIKKIM KLDEDVK--- ---------- ---------- ---------- ENSP00000396620/1-354 LPLARIKKIM KLDEDVK--- ---------- ---------- ---------- bmy_19249T0/1-377 LPLARIKKIM KLDEDVKPLP HSPRAGHEVR DELTGLNDLL VIDREGLRLL BACU000389/1-439 LPLARIKKIM KLDEDVK--- ---------- ---------- ---------- 101 150 ENSTTRP00000010012/1-458 -MISAEAPVL FAKAAQIFIT ELTLRAWIHT EDNKRRTLQR NDIAMAITKF ENSBTAP00000029254/1-334 -MISAEAPVL FAKAAQIFIT ELTLRAWIHT EDNKRRTLQR NDIAMAITKF ENSP00000396620/1-354 -MISAEAPVL FAKAAQIFIT ELTLRAWIHT EDNKRRTLQR NDIAMAITKF bmy_19249T0/1-377 QMISAEAPVL FAKAAQIFIT ELTLRAWIHT EDNKRRTLQR NDIAMAITKF BACU000389/1-439 -MISAEAPVL FAKAAQIFIT ELTLRAWIHT EDNKRRTLQR NDIAMAITKF 151 200 ENSTTRP00000010012/1-458 DQFDFLIDIV PRDELKPPKR QEEVRQSVTP AEPVQYYFTL AQQPTAVQVQ ENSBTAP00000029254/1-334 DQFDFLIDIV PRDELKPPKR QEEVRQSVTP AEPVQYYFTL AQQPTAVQVQ ENSP00000396620/1-354 DQFDFLIDIV PRDELKPPKR QEEVRQSVTP AEPVQYYFTL AQQPTAVQVQ bmy_19249T0/1-377 DQFDFLIDIV PRDELKPPKR QEEVRQSVTP AEPVQYYFTL AQQPTAVQVQ BACU000389/1-439 DQFDFLIDIV PRDELKPPKR QEEVRQSVTP AEPVQYYFTL AQQPTAVQVQ 201 250 ENSTTRP00000010012/1-458 GQQQGQQTTS STTTIQPGQI IIAQPQQGQT TPVTMQVGEG QQVQIVQAQP ENSBTAP00000029254/1-334 GQQQGQQTTS STTTIQPGQI IIAQPQQGQT TPVTMQVGEG QQVQIVQAQP ENSP00000396620/1-354 GQQQGQQTTS STTTIQPGQI IIAQPQQGQT TPVTMQVGEG QQVQIVQAQP bmy_19249T0/1-377 GQQQGQQTTS STTTIQPGQI IIAQPQQGQT TPVTMQVGEG QQVQIVQAQP BACU000389/1-439 GQQQGQQTTS STTTIQPGQI IIAQPQQGQT TPVTMQVGEG QQVQIVQAQP 251 300 ENSTTRP00000010012/1-458 QGQAQQAQSG TGQTMQVMQQ IITNTGEIQQ IPVQLNAGQL QYIRLAQPVS ENSBTAP00000029254/1-334 QGQAQQAQSG TGQTMQVMQQ IITNTGEIQQ IPVQLNAGQL QYIRLAQPVS ENSP00000396620/1-354 QGQAQQAQSG TGQTMQVMQQ IITNTGEIQQ IPVQLNAGQL QYIRLAQPVS bmy_19249T0/1-377 QGQAQQAQSG TGQTMQVMQQ IITNTGEIQQ IPVQLNAGQL QYIRLAQPVS BACU000389/1-439 QGQAQQAQSG TGQTMQVMQQ IITNTGEIQQ IPVQLNAGQL QYIRLAQPVS 301 350 ENSTTRP00000010012/1-458 GTQVVQGQIQ TLATNAQQRQ GSSRQGKPQG YLKKAQCXXX XXXXXXXXXX ENSBTAP00000029254/1-334 GTQVVQGQIQ TLATNAQ--- ---------- ------QITQ TEVQQGQQQF ENSP00000396620/1-354 GTQVVQGQIQ TLATNAQQGQ RNASQGKPRR CLKETLQITQ TEVQQGQQQF bmy_19249T0/1-377 GTQVVQGQIQ TLATNAQ--- ---------- ------QITQ TEVQQGQQQF BACU000389/1-439 GTQVVQGQIQ TLATNAQ--- ---------- ------QITQ TEVQQGQQQF 351 400 ENSTTRP00000010012/1-458 XXXXXXXRNS VQQARGSELT GEAEPREVKA TGNATPCTSS PPTTHTPSHR ENSBTAP00000029254/1-334 SQFTDG---- ---------- ---------- ---------- ---------- ENSP00000396620/1-354 SQFTDG---- ---------- ---------- ---------- ---------- bmy_19249T0/1-377 SQFTDG---- ---------- ---------- ---------- ---------- BACU000389/1-439 SQFTDGQRNS VQQARGSELT GEAEPREVKA TGNATPCTSS PPTTHTPSHR 401 450 ENSTTRP00000010012/1-458 AGASCVCCSQ PQQNSTSPPP SDALQWVVVE VSGAPNQLEA HRELHAPLPG ENSBTAP00000029254/1-334 ---------- ---------- ---------- ---------- ---------- ENSP00000396620/1-354 ---------- ---------- ---------- ---------- ---------- bmy_19249T0/1-377 ---------- ---------- ---------- ---------- ---------- BACU000389/1-439 AGASCVCCSQ PQQSSTSPPP SDALQWVVVE VSGAPNQLEA HRELHAPLPG 451 500 ENSTTRP00000010012/1-458 VTSLSPLHPS QQLYQIQQVT MPAGQDLAQP MFIQSANQPS DGQAPQVTGD ENSBTAP00000029254/1-334 ---------- -QLYQIQQVT MPAGQDLAQP MFIQSANQPS DGQAPQVTGD ENSP00000396620/1-354 ---------- QQLYQIQQVT MPAGQDLAQP MFIQSANQPS DGQAPQVTGD bmy_19249T0/1-377 ---------- QQLYQIQQVT MPAGQDLAQP MFIQSANQPS DGQAPQVTGD BACU000389/1-439 VTSLSPLHPS QQLYQIQQVT MPAGQDLAQP MFIQSANQPS DGQAPQVTGD