KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:38:27 2014 Check: 00 .. Name: ENSBTAP00000029263/1-725 Len: 1329 Check: 2101 Weight: 1.00 Name: ENSTTRP00000008610/1-1324 Len: 1329 Check: 990 Weight: 1.00 Name: bmy_08896T0/1-1250 Len: 1329 Check: 8873 Weight: 1.00 Name: BACU009656/1-1326 Len: 1329 Check: 891 Weight: 1.00 // 1 50 ENSBTAP00000029263/1-725 MKEPLDGECG KALAPQQALL DKIKEEPDNA QEYIHASKPK AQESELKISA ENSTTRP00000008610/1-1324 MKEPLDGECG KAMAPQRGLL DKIKEEPDNA QEYVHASKPK TQESELKISA bmy_08896T0/1-1250 ---------- ---------- ---------- -EYVHASKPK SQESELKISA BACU009656/1-1326 MKEPLDGECG KAMAPQRGLL DKIKEEPDNA QEYVHASKPK TQESELKISA 51 100 ENSBTAP00000029263/1-725 VFSVSDSPL- ----AQQLTP GFQLSLASSG PNVSLPSVPA VALQVFCSGC ENSTTRP00000008610/1-1324 VFSVSDSPL- ----AQQLTP GFQLSLASSG PNISLPSVPA VAIQVFCSGC bmy_08896T0/1-1250 VFSVSDSPLG KKQNSQQLTP GFQLSLASSG PNISLPSVPA VAIQVFCSGC BACU009656/1-1326 VFSVSDSPLG KKQNSQQLTP GFQLSLASSG PNISLPSVPA VAIQVFCSGC 101 150 ENSBTAP00000029263/1-725 KKMLYKGQTA FHKTGSTQLF CSTRCIIGHS SSVCLLPPPK KTCANCSKDI ENSTTRP00000008610/1-1324 KKMLYKGQTA FHKTGSTQLF CSTRCIIGYS SPVCLPPPPK KTCANCSKDI bmy_08896T0/1-1250 KKMLYKGQTA FHKTGSTQLF CSTRCIIGYS SPVCLPPPPK KTCANCSKDI BACU009656/1-1326 KKMLYKGQTA FHKTGSTQLF CSTRCIIGYS SPVCLPPPPK KTCANCSKDI 151 200 ENSBTAP00000029263/1-725 LNPKDVITTQ FENSSPSKDF CSQSCLSSYE LKRKPVVTIY TNSISTKCSM ENSTTRP00000008610/1-1324 LNPKDVITTR FENSSPSKDF CSQSCLSSYE LKKKPVVTIY TNSISTRCSM bmy_08896T0/1-1250 LNPKDVITTR FENSSPSKDF CSQSCLSSYE LKKKPVVTIY TNSISTRCSM BACU009656/1-1326 LNPKDVITTR FENSSPSKDF CSQSCLSSYE LKKKPVVTIY TNSISTRCSM 201 250 ENSBTAP00000029263/1-725 CQKNADIRFE VKYQNVVHGL CSDACFSKFH STNNLTMNCC ENCGSYCYSS ENSTTRP00000008610/1-1324 CQKNADIRFE VKYQNVVHGL CSDACFSKFH STNNLTMNCC ENCGSYCYSS bmy_08896T0/1-1250 CQKNADIRFE VKYQNVVHGL CSDACFSKFH STNNLTMNCC ENCGSYCYSS BACU009656/1-1326 CQKNADIRFE VKYQNVVHGL CSDACFSKFH STNNLTMNCC ENCGSYCYSS 251 300 ENSBTAP00000029263/1-725 SGPCQSQKVF SSTSIMAYKQ NSAQTPPYAL GKSLRPSAEM IETTNDSGKT ENSTTRP00000008610/1-1324 SGPCQSQKVF SSTSITAYKQ NSAQTPPYAL GKSLRPSAEM IETTNDSGKT bmy_08896T0/1-1250 SGPCQSQKVF SSTSITAYKQ NSAQTPPYAL GKSLRPSAEM IETTNDSGKT BACU009656/1-1326 SGPCQSQKVF SSTSITAYKQ NSAQTPPYAL GKSLRPSAEM IETTNDSGKT 301 350 ENSBTAP00000029263/1-725 ELFCSINCLS AYRVKTVTSS GVQVLCHSCK TSAVPQYHLA MSNGTIHSFC ENSTTRP00000008610/1-1324 ELFCSINCLS AYRVKTVISS GVQVLCHSCK TSAVPQYHLA MSNGTIYSFC bmy_08896T0/1-1250 ELFCSINCLS AYRVKTVISS GVQVLCHSCK TSAVPQYHLA MSNGTIYSFC BACU009656/1-1326 ELFCSINCLS AYRVKTVISS GVQVLCHSCK TSAVPQYHLA MSNGTIYSFC 351 400 ENSBTAP00000029263/1-725 SSSCVVAFQN VFNKPKGANS SAVPVSQTQV IVSPPSGSAV SAGRGHTSAF ENSTTRP00000008610/1-1324 SSSCVVAFQN VFNKPKGTNS SAVPLSQGQV VVSPPSGSAV SAGGGNTSAV bmy_08896T0/1-1250 SSSCVVAFQN VFNKPKGTNS SAVPLSQGQV VVSPPSGSAV PAGGGDSSAV BACU009656/1-1326 SSSCVVAFQN VFNKPKGTNS SAVPLSQGQV VVSPPSGSAV PAGGGDTSAV 401 450 ENSBTAP00000029263/1-725 SPRSVSGSVA ASLQPP-AQF QQVALTHRIV RLRCQHCNHL FATKPELLFY ENSTTRP00000008610/1-1324 SRSSVSGSAA ANLQPPSAQS QQVALTHTVV KLKCQHCNHL FATKPELLFY bmy_08896T0/1-1250 SPSSVRGSAA ASLQPPSAQS RQVALTHAVV KLKCQHCSHL FATKPELLFY BACU009656/1-1326 SPSSVRGSAA ANLQPPSAQS QQVALTHTVV KLKCQHCNHL FATKPELLFY 451 500 ENSBTAP00000029263/1-725 KGRMFLFCGK LCSDEYKKKN RVMAMCDYCK LQKIIKETVR FSGVDKPFCS ENSTTRP00000008610/1-1324 KGKMFLFCGK ICSDEYKKRN KVMAMCDYCK LQKIIKETVR FSGVDKPFCS bmy_08896T0/1-1250 KGKMFLFCGT ICSDEYKKRN KVMAMCDYCK LQKIIKETVR FSGVDKPFCS BACU009656/1-1326 KGKMFLFCGT ICSDEYKKRN KVMAMCDYCK LQKIIKETVR FSGVDKPFCS 501 550 ENSBTAP00000029263/1-725 EVCKFLSARD FGERWGSYCK MCSYCSQTSP NLVENRLEGK LEEFCCEDCM ENSTTRP00000008610/1-1324 EVCKFLSARD FGERWGNYCK MCSYCSQTSP NLVENRLEGK LEEFCCEDCM bmy_08896T0/1-1250 EVCKFLSARD FGERWGNYCK MCSYCSQTSP NLVENRLEGK LEEFCCEDCM BACU009656/1-1326 EVCKLLSARD FGERWGNYCK ICSYCSQTSP NLVENRLEGK LEEFCCEDCM 551 600 ENSBTAP00000029263/1-725 TKFTVLFYQM AKCDGCKRQG KLSESIKWRG NIKHFCNLFC VLEFCHRQQI ENSTTRP00000008610/1-1324 TKFTVLFYQM AKCDGCKRQG KLSESIKWRG NIKHFCNLFC VMEFCHRQQI bmy_08896T0/1-1250 TKFTVLFYQM AKCDGCKRQG KLSESIKWRG NIKHFCNLFC VMEFCHRQQT BACU009656/1-1326 TKFTVLFYQM AKCDGCKRQG KLSESIKWRG NIKHFCNLFC VMEFCHRQQI 601 650 ENSBTAP00000029263/1-725 MNDPFSQNKV NISKAHIASV ALPAARTNTT PVITNVVSLA KISPAQPTGS ENSTTRP00000008610/1-1324 MNDPLSQNKV NISKAQTASV ELPSARTNTI PVITNVVSLA KISPAQLTEN bmy_08896T0/1-1250 MNDPLSQN-- ---------- ---------- ---------- ---------- BACU009656/1-1326 MNDPLSQNKV NISKAQTASV ELPSARTNTI PVITNVVSLA KISPAQLTGN 651 700 ENSBTAP00000029263/1-725 GVSKGAVVTK EATKIIENGS VQTDAMKLLS SQSSKLLKNK ALLCKPVTQT ENSTTRP00000008610/1-1324 VVLKGAVNTK EAAKIIEDXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_08896T0/1-1250 ---KGAVNTK EAAKIIEDGS TQTDAMKLLS SQSLKLLKNK ALLCKPVTQT BACU009656/1-1326 VVLKGAVNTK EAAKIIEDGS TQTDAMKLLS SQSLKLLKNK ALLCKPVTQT 701 750 ENSBTAP00000029263/1-725 KATS---CKP HTQHKECQTD LSMPNEKNDV ELDS------ ---------- ENSTTRP00000008610/1-1324 XXXXXXXXXX XXXXXXXXXX LSMPNEKNDA ELDSPPAKKK RIGFFQTYDV bmy_08896T0/1-1250 KATS---CKP HTQHKECQTD LSMPNEKNDA ELDSPPAKKK RIGFFQTYDV BACU009656/1-1326 KATS---CKP HTQHKECQTD LSMPNEKNDA ELDSPPAKKK RIGFFQTYDV 751 800 ENSBTAP00000029263/1-725 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008610/1-1324 EYLKVGFIIC PGSKESSPRP QCVICGEILS SENMKPANLS HHLKTKHSEL bmy_08896T0/1-1250 EYLKVGFIIC PGSKESSPRP QCVICGEILS SENMKPANLS HHLKTKHSEL BACU009656/1-1326 EYLKVGFIIC PGSKESSPRP QCVICGEILS SENMKPANLS HHLKTKHSEL 801 850 ENSBTAP00000029263/1-725 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008610/1-1324 ENKPVDFFEQ KSLEMECQNS ALKKCLLVEK SLVKASYLIA FQIAASKKPF bmy_08896T0/1-1250 ENKPVDFFEE KSLEMECQNS ALKKCLLVEK SLVKASYLIA FQIAASKKPF BACU009656/1-1326 ENKPVDFFEE KSLEMECQNS ALKKCLLVEK SLVKASYLIA FQIAASKKPF 851 900 ENSBTAP00000029263/1-725 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008610/1-1324 SIAEEIIKPY LAEMCSEVLG SSAGDKMKTI PLSNSTIGHR IDELSADIED bmy_08896T0/1-1250 SIAEEVIKPY LVEMCSEVLG SSAGDKMKTI PLSNSTIGHR IDELSADVED BACU009656/1-1326 SIAEEVIKPY LVEMCSEVLG SSAGDKMKTI PLSNSTIGHR IDELSADIED 901 950 ENSBTAP00000029263/1-725 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008610/1-1324 QLIQKVRESK WFALQIDESL EISNTTLLLC YIRFIDYGCS DIKEELLCCI bmy_08896T0/1-1250 QLIQKVRESK WFALQIDESS EISNTTLLLC YIRFIDYGCS DIKEELLCCI BACU009656/1-1326 QLIQKVRESK WFALQIDESP EISNTTLLLC YIRFIDYGCS DIKEELLCCI 951 1000 ENSBTAP00000029263/1-725 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008610/1-1324 EMPSQMTGFE IFELINKYID SKSLNWKHCV GLCTDGAASM TGRCSGLRAK bmy_08896T0/1-1250 EMPSQMTGFE IFELINKYID SKSLNWKHCV GLCTDGAASM TGRCSGLRAK BACU009656/1-1326 EMPSQMTGFE IFELINKYID SKSLNWKHCV GLCTDGAASM TGRCSGLRAK 1001 1050 ENSBTAP00000029263/1-725 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008610/1-1324 IQEVAMNTVA FTHCFIHREH LAAEKLSPCL HEILMQSAQI LSFIKSNALN bmy_08896T0/1-1250 IQEVAMNTVA FTHCFIHREH LAAEKLSPCL HEILLQSAQI LSFIKSNALN BACU009656/1-1326 IQEVAMNTVA FTHCFIHREH LAAAKLSPCL HEILLQSAQI LSFIKSNALN 1051 1100 ENSBTAP00000029263/1-725 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008610/1-1324 SRMLTILCEE MGSEHVNLPL HAEVRWISRG RILTRLFELR HEIEIFLNQN bmy_08896T0/1-1250 SRMLTILCEE MGSEHMNLPL HAEVRWISRG RILTRLFELR HEIEIFLNQN BACU009656/1-1326 SRMLTILCEE MGSEHVNLPL HAEVRWISRG RILTRLFELR HEIEIFLNQN 1101 1150 ENSBTAP00000029263/1-725 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008610/1-1324 HSDLAKYFFD EEWVAKLAYL SDIFSLINEL NLSLQGSMTT LFNLYNKIDI bmy_08896T0/1-1250 HSDLAKYFFD EEWVAKLAYL SDIFSLINEL NLSLQGSMTT LFNLYNKIDM BACU009656/1-1326 HSDLAKYFFD EEWVAKLAYL SDIFSLINEL NLSLQGSMTT LFNLYNKIDM 1151 1200 ENSBTAP00000029263/1-725 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008610/1-1324 LKKKLKMWLK RMEENDYDMF PSFSEFSNSS GLNMSSIASI IFEHLEGLSQ bmy_08896T0/1-1250 LKKKLKMWLK RMQENDYDMF PSFSEFSNSS GLNMSSIASI IFEHLEGLSQ BACU009656/1-1326 LKKKLKMWLK RMQENDYDMF PSFSEFSNSS GLNMSSIASI IFEHLEGLSQ 1201 1250 ENSBTAP00000029263/1-725 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008610/1-1324 MLNDCYPPEE DLCSGNLWII NPFMNHQNSN LTDFEEEKLA RLSSDLGLQS bmy_08896T0/1-1250 MLNDCYPPEE DLCSGNLWII NPFMNHQNSN LTDXEEEKLA QLSSDLGLQS BACU009656/1-1326 MLNDCYPPEE DLCSGNLWII NPFMNHQNSN LTDFEEEKLA QLSSDLGLQS 1251 1300 ENSBTAP00000029263/1-725 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008610/1-1324 VFKSMSVTQF WINAKASYPE LHEKALKFLL PFSTIYLCDA TFSALTESKQ bmy_08896T0/1-1250 VFKSMSVTQF WINAKASYPE LHEKALKFLL PFSTIYLCDA TFSALTESKQ BACU009656/1-1326 VFKSMSVTQF WINAKASYPE LHEKALKFLL PFSTIYLCDA TFSALTESKQ 1301 1350 ENSBTAP00000029263/1-725 ---------- ---------- --------- ENSTTRP00000008610/1-1324 RNLLVSGPAL RLAVTSLIPR IEKLVKEKE bmy_08896T0/1-1250 RNLLVSGPAL RLAVTSLIPR IEKLVKEKE BACU009656/1-1326 RNLLVSGPAL RLAVTSLIPR IEKLVKEKE