KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:38:50 2014 Check: 00 .. Name: ENSTTRP00000015934/1-639 Len: 714 Check: 9950 Weight: 1.00 Name: bmy_05957T0/1-345 Len: 714 Check: 7595 Weight: 1.00 Name: BACU014317/1-652 Len: 714 Check: 7471 Weight: 1.00 Name: ENSP00000356870/1-639 Len: 714 Check: 2535 Weight: 1.00 Name: ENSBTAP00000029290/1-623 Len: 714 Check: 3304 Weight: 1.00 // 1 50 ENSTTRP00000015934/1-639 MEDSQDLNEQ SVKKTCTESD VPEPQNSRSM EMQDLASPHP LVGGGDTPGS bmy_05957T0/1-345 ---------- ---------- ---------M EMQDLASPHP LVGGGDTPGS BACU014317/1-652 ---------- ---------- --ASCSNRSM EMQDLASPHP LVGGGDTPGS ENSP00000356870/1-639 MEDSQDLNEQ SVKKTCTESD VSQSQNSRSM EMQDLASPHT LVGGGDTPGS ENSBTAP00000029290/1-623 ---------- ---------- -----SNRSM EMQDLASPHP LVGGGDTPGS 51 100 ENSTTRP00000015934/1-639 SKLEKANLSS TSVTTNGTGG DNMTVLNTAD WLLSCNTPSS ATMSLLAVKT bmy_05957T0/1-345 SKLEKANLSS TSVTTNGTG- ---------- ---------- --VSLLAVKT BACU014317/1-652 SKLEKANLSS TSVTTNGTG- ---------- ---------- -------VKT ENSP00000356870/1-639 SKLEKSNLSS TSVTTNGTGG ENMTVLNTAD WLLSCNTPSS ATMSLLAVKT ENSBTAP00000029290/1-623 SKLEKTNLSS TSVTTNGTGG DNMTVLNTAD WLLSCNTPSS ATMSLLAVKT 101 150 ENSTTRP00000015934/1-639 EPLNSSETTT TTGDGALDTF TGSVITSSGY SPRSAHQYSP QLYPSKPYPH bmy_05957T0/1-345 EPLNSSETTT TTGDGALDTF TGSVITSSGY SPRSAHQYSP QLYPSKPYPH BACU014317/1-652 EPLNSSETTT TTGDGALDTF TGSVITSSGY SPRSAHQYSP QLYPSKPYPH ENSP00000356870/1-639 EPLNSSETTA TTGDGALDTF TGSVITSSGY SPRSAHQYSP QLYPSKPYPH ENSBTAP00000029290/1-623 EPLNSSETTA TTGDGALDTF TGSVITSSGY SPRSAHQYSP QLYPSKPYPH 151 200 ENSTTRP00000015934/1-639 ILSTPAAQTM SAYAGQTQYS GMQQPAVYTA YSQTGQPYSL PTYDLGVMLP bmy_05957T0/1-345 ILSTPAAQTM SAYAGQTQYS GMQQPAVYTA YSQTGQPYSL PTYDLGVMLP BACU014317/1-652 ILSTPAAQTM SAYAGQTQYS GMQQPAVYTA YSQTGQPYSL PTYDLGVMLP ENSP00000356870/1-639 ILSTPAAQTM SAYAGQTQYS GMQQPAVYTA YSQTGQPYSL PTYDLGVMLP ENSBTAP00000029290/1-623 ILSTPAAQTM SAYAGQTQYS GMQQPAVYTA YSQTGQPYSL PTYDLGVMLP 201 250 ENSTTRP00000015934/1-639 GIKTEGGLSQ TQSPLQSGCL SYSPGFSTPQ PGQTPYSYQM PGSSFAPSST bmy_05957T0/1-345 GIKTEGGLSQ TQSPLQSGCL SYSPGFSTPQ PGQTPYSYQM PGSSFAPSST BACU014317/1-652 GIKTEGGLSQ TQSPLQSGCL SYSPGFSTPQ PGQTPYSYQM PGSSFAPSST ENSP00000356870/1-639 AIKTESGLSQ TQSPLQSGCL SYSPGFSTPQ PGQTPYSYQM PGSSFAPSST ENSBTAP00000029290/1-623 GIKTESGLSQ TQSPLQSGCL SYSPGFSTPQ PGQTPYSYQM PGSSFAPSST 251 300 ENSTTRP00000015934/1-639 IYANNSVSNS TNFSGSQQDY PSYAAFGQNQ YAQYYSASTY GAYMTSNNTA bmy_05957T0/1-345 IYANNSVSNS TNFSGSQQDY PSYTAFGQNQ YAQYYSTSTY GAYMTSNNTA BACU014317/1-652 IYANNSVSNS TNFSGSQQDY PSYTAFGQNQ YAQYYSASTY GAYMTSNNTA ENSP00000356870/1-639 IYANNSVSNS TNFSGSQQDY PSYTAFGQNQ YAQYYSASTY GAYMTSNNTA ENSBTAP00000029290/1-623 IYANNSVSNS TNFSGSQQDY PSYTAFGQNQ YAQYYSASTY GAYMTSNNTA 301 350 ENSTTRP00000015934/1-639 DGTSSSTSTY QLQESLTGLT SQ------PG EFDTVQSPST PIKDLDERTC bmy_05957T0/1-345 DGTSSSTSTY QLQESLTGLT SQ------PG EFDTVQSPST PIKDLDERTC BACU014317/1-652 DGTPSSSSTY QLQESLTGLT SQ------PG EFDTVQSPST PIKDLDERTC ENSP00000356870/1-639 DGTPSSTSTY QLQESLPGLT NQ------PG EFDTMQSPST PIKDLDERTC ENSBTAP00000029290/1-623 DGSSSTTSTY QLQESLPGLT SQPGTDLHPG EFDTVQSPST PIKDLDERTC 351 400 ENSTTRP00000015934/1-639 RSSGAKSRGR GRKSNPSPPP DSDLEXXXXX XXXXXXXXXX XXXXXXXXXX bmy_05957T0/1-345 RSSGSKSRGR GRKSNPSPPP DSDLERVFVW DLDETIIVFH SLLTGSYAQK BACU014317/1-652 RSSGSKSRGR GRKSNPSPPP DSDLERVFVW DLDETIIVFH SLLTGSYAQK ENSP00000356870/1-639 RSSGSKSRGR GRKNNPSPPP DSDLERVFVW DLDETIIVFH SLLTGSYAQK ENSBTAP00000029290/1-623 RSSGSKSRGR GRKNNPSPPP DSDLERVFVW DLDETIIVFH SLLTGSYAQK 401 450 ENSTTRP00000015934/1-639 XXX------- ---------- ---------- ---------- ---------- bmy_05957T0/1-345 YGK------- ---------- ---------- ---------- ---------- BACU014317/1-652 YGKKVVGSMT KKRGTMCPLV LEVKSTDDLY GGSIESYVLQ KRGIDESNNQ ENSP00000356870/1-639 YGK------- ---------- ---------- ---------- ---------- ENSBTAP00000029290/1-623 YGK------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000015934/1-639 ---DPPMAVT LGLRMEEMIF NLADTHLFFN DLEXXXXXXX XXXXXXXXXX bmy_05957T0/1-345 ---------- ---------- ---------- ---------- ---------- BACU014317/1-652 KETDPPMAVT LGLRMEEMIF NLADTHLFFN DLEECDQVHI DDVSSDDNGQ ENSP00000356870/1-639 ---DPPMAVT LGLRMEEMIF NLADTHLFFN DLEECDQVHI DDVSSDDNGQ ENSBTAP00000029290/1-623 ---DPPMAVT LGLRMEEMIF NLADTHLFFN DLEECDQVHI DDVSSDDNGQ 501 550 ENSTTRP00000015934/1-639 XX---XXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_05957T0/1-345 ---------- ---------- ---------- ---------- ---------- BACU014317/1-652 DL---STYSF ATDGFHAAAS SANLCLPTGV RGGVDWMRKL AFRYRRVKEL ENSP00000356870/1-639 DL---STYSF ATDGFHAAAS SANLCLPTGV RGGVDWMRKL AFRYRRVKEL ENSBTAP00000029290/1-623 DLRCCSTYSF ATDGFHAAAS SANLCLPTGV RGGVDWMRKL AFRYRRVKEL 551 600 ENSTTRP00000015934/1-639 XXXXXXXXXX LLGPAKRDAW LQLRAEIEGL TDSWLTNALK SLSIISTRSN bmy_05957T0/1-345 ---------- ---------- ---------- ---------- ---------- BACU014317/1-652 YNTYKNNVGG LLGPAKRDAW LQLRAEIEGL TDSWLTNALK SLSIISTRSN ENSP00000356870/1-639 YNTYKNNVGG LLGPAKRDAW LQLRAEIEGL TDSWLTNALK SLSIISTRSN ENSBTAP00000029290/1-623 YNTYKNNVGG LLGPAKRDAW LQLRAEIEGL TDSWLTNALK SLSIISTRSN 601 650 ENSTTRP00000015934/1-639 CVNVLVTTTQ LIPALAKVLL YSLGGAFPIE NIYSATKIGK ESCFERIVSR bmy_05957T0/1-345 ---------- ---------- ---------- ---------- ---------- BACU014317/1-652 CVNVLVTTTQ LIPALAKVLL YSLGGAFPIE NIYSATKIGK ESCFERIMQR ENSP00000356870/1-639 CINVLVTTTQ LIPALAKVLL YSLGGAFPIE NIYSATKIGK ESCFERIMQR ENSBTAP00000029290/1-623 CVNVLVTTTQ LIPALAKVLL YSLGGAFPIE NIYSATKIGK ESCFERIMQR 651 700 ENSTTRP00000015934/1-639 FGTNITYVVI GDGRDEEHAA NQHNMPFW-- ---------- ----RISSHS bmy_05957T0/1-345 ---------- ---------- ---------- ---------- ---------- BACU014317/1-652 FGRKVVYVVI GDGVEEEQAA KKARLLMLLN LQVQKGTPLY RAKRKVTDYI ENSP00000356870/1-639 FGRKVVYVVI GDGVEEEQAA KKHNMPFW-- ---------- ----RISSHS ENSBTAP00000029290/1-623 FGRKVVYVVI GDGVEEEQAA KKHNMPFW-- ---------- ----RISSHS 701 750 ENSTTRP00000015934/1-639 DLLALHQALE LEYL bmy_05957T0/1-345 ---------- ---- BACU014317/1-652 SSAISHRPLR R--- ENSP00000356870/1-639 DLLALHQALE LEYL ENSBTAP00000029290/1-623 DLLALHQALE LEYL