KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:38:51 2014 Check: 00 .. Name: ENSP00000261368/1-919 Len: 1051 Check: 9344 Weight: 1.00 Name: ENSBTAP00000029292/1-928 Len: 1051 Check: 5871 Weight: 1.00 Name: bmy_20136T0/1-1000 Len: 1051 Check: 8058 Weight: 1.00 Name: BACU013022/1-965 Len: 1051 Check: 3719 Weight: 1.00 Name: ENSTTRP00000008838/1-1013 Len: 1051 Check: 7109 Weight: 1.00 // 1 50 ENSP00000261368/1-919 -MEAPEYLDL DEIDFSDDIS ---------- ---------- -YSVTSLKTI ENSBTAP00000029292/1-928 ---------- ---------- ---------- ---------- ---------- bmy_20136T0/1-1000 MMEAPEYLDL DEIDFSDDIS --------VE SGMLPDHQAA HLGIQSRHSR BACU013022/1-965 ---------- ---------- ---------R LGLGSRDREG TWVFGSVRAK ENSTTRP00000008838/1-1013 -MEAPEYLDL DEIDFSDDIS DNRNQGNRIR LGLGSRDREG TWVFGSVKGK 51 100 ENSP00000261368/1-919 P------ELC RRCDTQNED- ----RSV--- ---------- ---------- ENSBTAP00000029292/1-928 ---------- ---------- ----KTV--- ---------- ---------- bmy_20136T0/1-1000 PSRNCAEDVI RKTKTDQSPL LIYFKTV--- ---------- ---------- BACU013022/1-965 I------TVV ATLGAGLCP- ----ENA--- ---------- ---------- ENSTTRP00000008838/1-1013 I------TVV ATLGAGHCP- ----ENAXXX XXXXXXXXXX XXXXXXXXXX 101 150 ENSP00000261368/1-919 --SSSSWNCG ISTLITNTQK PTGIADVYSK FRPVKRVSPL KHQPETLENN ENSBTAP00000029292/1-928 --SSSGWNCG VSTLITNTQK PTGIADVYSK FRPVKRVSPL KHQPETLENN bmy_20136T0/1-1000 --SSSSWNCG VSTLITNTQK PTGIADVYSK FRPVKRVSPL KHQPETLENN BACU013022/1-965 ---------- ---------K PTGIADVYSK FRPVKRVSPL KHQPETLENN ENSTTRP00000008838/1-1013 XXSSSSWNCS VSTLITNTQK PTGIADVYSK FRPVKRVSPL KHQPETLENN 151 200 ENSP00000261368/1-919 ESDDQKNQKV VEYQKGGESD LGPQPQELGP GDGVGGPPGK SSEPSTSLGE ENSBTAP00000029292/1-928 ESDDQKNQK- AEYQKGNDPD PGPQPEELGP RAVEGSPQRK STEPSTLLGE bmy_20136T0/1-1000 ESDDQKNQK- AEYQKGGDSD PGPQPEELSP RDGESSPPSK STEPSPLLGE BACU013022/1-965 ESDDQKNQK- AEYQKGGDSD PGPQPEELSP RDGESSPPSK STEPSPLLGE ENSTTRP00000008838/1-1013 ESDDQKNQK- AEYQKGGDSD PGPQPEELSP RDGESSPPSK STEPSPLLGE 201 250 ENSP00000261368/1-919 LEHYDLDMDE ILDVPYIKSS QQLASFTKVT SEKRILGLCT TINGLSGKAC ENSBTAP00000029292/1-928 LEHYDLDMDE ILDVPYIKSS QQLASFTKAT SEKRILGLCT SINGLSGKAC bmy_20136T0/1-1000 LEHYDLDMDE ILDVPYIKSS QQLASFTKVT SEKRILGLCT SINGLSSKAC BACU013022/1-965 LEHYDLDMDE ILDVPYIKSS QQLASFTKVT SEKRILGLCT SINGLSSKAC ENSTTRP00000008838/1-1013 LEHYDLDMDE ILDVPYIKSS QQLASFAKVT SEKRILGLCT SISGLSSKAC 251 300 ENSP00000261368/1-919 STGSSESSSS NMAPFCVLSP VKSPHLRKAS AVIHDQHKLS TEETEISPPL ENSBTAP00000029292/1-928 PTGSAESSPS NMTPFCVLSP VKSPHLRKAS SVVQDQQKLS PEESESSPPL bmy_20136T0/1-1000 STGNAENSPS SMTPFCVLSP VKSPHLRKAS SVVRDQQKLS TEESESSPPL BACU013022/1-965 STGNAENSLS SMTPFCVLSP VKSPHLRKAS SVVRDQQKLS TEESESSPPL ENSTTRP00000008838/1-1013 STGNAENSLS NMTPFCVLSP VKSPHLRKTS SVVRDQQKLS TEESESSPPL 301 350 ENSP00000261368/1-919 VKCGSAYEPE NQSKDFLNKT FSDPHGRKVE KTT-PDCQLR AFHLQSSAAE ENSBTAP00000029292/1-928 VKSGSAYEPE NQGKDFLHKT FSDPHSRKVD KAMAPDCQLR AFHLQSSATD bmy_20136T0/1-1000 VKCGSAYEPE NQSKDFPNKT FSDPHGRKVD KAM-PDCQLR AFHLQSSAPD BACU013022/1-965 VKCGSAYEPE NQSKDFPNKT FSDPHGRKVD KAM-PDCQLR AFHLQSSAPD ENSTTRP00000008838/1-1013 VKCGSAYEPE NQSKDFPNKI FSEPHGRKVD KAM-PDCQLR AFHLQSSAPD 351 400 ENSP00000261368/1-919 SKPEEQVSGL NRTSSQGPEE RSEYLKKVKS ILNIVKEGQI SLLPHLAADN ENSBTAP00000029292/1-928 PKLEEQIGGM NWTSSQGPEE RNEYLKKVKS ILNIVKEGQI SLLPHLAADN bmy_20136T0/1-1000 PKLEEQISGM NWTSSQGPEE RSEYLKKVKS ILNIVKEGQI SLLPHLAADN BACU013022/1-965 PKLEEQIGGM NWTSSQGPEE RSEYLKKVKS ILNIVKEGQI SLLPHLAADN ENSTTRP00000008838/1-1013 PKLEEQVSGV NWTSSQGPEE RSEYLKKVKS ILNIVKEGQI SLLPHLAADN 401 450 ENSP00000261368/1-919 LDKIHDENGN NLLHIAASQG HAECLQHLTS LMGEDCLNER NTEKLTPAGL ENSBTAP00000029292/1-928 LDKIHDESGN NLLHVAASQG HAECLQHLTS LMGEDCLNER NVEKLTPAGL bmy_20136T0/1-1000 LDKIHDESGN NLLHVAAAQG HAECLQHLTS LMGEDCLNER NVEKLTPAGL BACU013022/1-965 LDKIHDESGN NLLHVAAAQG HAECLQHLTS LMGEDCLNER NVEKLTPAGL ENSTTRP00000008838/1-1013 LDKIHDESGN NLLHVAAAQG HAECLQHLTS LMGEDCLNER NVEKLTPAGL 451 500 ENSP00000261368/1-919 AIKNGQLECV RWMVSETEAI AELSCSKDFP SLIHYAGCYG QEKILLWLLQ ENSBTAP00000029292/1-928 AIKNGQLECV RWMVSETEAI AELSCSKDFP SLIHYAGCFG QEKILLWLLQ bmy_20136T0/1-1000 AIKNGQLECV RWMVSETEAI AELSCSKDFP SLIHYAGCFG QEKILLWLLQ BACU013022/1-965 AIKNGQLECV RWMVSETEAI AELSCSKDFP SLIHYAGCFG QEKILLWLLQ ENSTTRP00000008838/1-1013 AIKNGQLECV RWMVSETEAI AELSCSKDFP SLIHYAGCFG QEKILLWLLQ 501 550 ENSP00000261368/1-919 FMQEQGISLD EVDQDGNSAV HVASQHGYLG CIQTLVEYGA NVTMQNHAGE ENSBTAP00000029292/1-928 FMQEQGISLD EVDQDGNSAV HVASQHGYLG CIQTLVEYGA NVTMQNHAGE bmy_20136T0/1-1000 FMQEQGISLD EVDQEGNSAV HVASQHGYLG CI-------- ----QNHAGE BACU013022/1-965 FMQEQGISLD EVDQEGNSAV HVASQHGYLG CIQTLVEYGA NVTMQNHAGE ENSTTRP00000008838/1-1013 FMQEQGISLD EVDQEGNSAV HVASQHGYLG CIQTLVEYGA NVTMQNHAGE 551 600 ENSP00000261368/1-919 KPSQSAERQG HTLCSRYLVV VETCMSLASQ VVKLTKQLKE QTVERVTLQN ENSBTAP00000029292/1-928 KPSQSAERHG HSLCSRYLVV VETCMSLASQ VVKLTKQLKE QTTQRVTLQN bmy_20136T0/1-1000 KPSQSAERHG HTLCSRYLVV VETCMSLASQ VVKLTKQLKE QTMQRVTLQN BACU013022/1-965 KPSQSAERHG HTLCSRYLVV VETCMSLASQ VVKLTKQLKE QTMQRVTLQN ENSTTRP00000008838/1-1013 KPSQSAERHG HTLCSRYLMV VETCMSLASQ VVKLTKQ-EE QTMQRVTLQN 601 650 ENSP00000261368/1-919 QLQQFLEAQK SEGKSLPSSP SSPSSPASRK SQWKSPDADD DSVAKSKPGV ENSBTAP00000029292/1-928 QLQQLLEAQK SEGKSLLSSP SSPSSPACRK SQWKSPDAED ESVAKSKSGV bmy_20136T0/1-1000 QLQQLLEAQK SEGKSLLSSP SSPSSPASRK SQWKSPDADD EPIGKSKPGI BACU013022/1-965 QLQQLLEAQK SEGKSLLSSP SSPSSPASRK SQWKSPDADD EPIGKSKPGI ENSTTRP00000008838/1-1013 QLQQLLEAQK SEGKSLLSSP SSPSSPASRK SQWKSPDADD EPIGKSKPGI 651 700 ENSP00000261368/1-919 QEGIQVLGSL SASSRARPKA KDEDSDKILR QLLGKEISEN VCTQEKLSLE ENSBTAP00000029292/1-928 QEGIQVLGSL SASSRARAKV KDEDSDKILR QLLGKDISEN VCTQEKLSLE bmy_20136T0/1-1000 QEGIQVLGSL SASSRARAKA KDEDSDKILR QLLGKDISEN VCTQEKLSLE BACU013022/1-965 QEGIQVLGSL SASSRARAKA KDEDSDKILR QLLGKDISEN VCTQEKLSLE ENSTTRP00000008838/1-1013 QEGIQVLGSL SVSSRARAKA KDEDSDKILR QLLGKDISEN VCTQEKLSLE 701 750 ENSP00000261368/1-919 FQDAQASSRN SKKIPLEKRE LKLARLRQLM QRSLSESDTD SNNSEDPKTT ENSBTAP00000029292/1-928 FQDAQTSSRH SKKIPLEKRE LKLARLKQLM QRPLSEADTD SNNSEDPKGT bmy_20136T0/1-1000 FQDAQASSRN SKKTPLEKRE LKLARLKQLM QRSLSESDTD SNNSEEAKGT BACU013022/1-965 FQDAQASSRN AKKTPLEKRE LKLARLKQLM QRSLSESDTD SNNSEEPKGT ENSTTRP00000008838/1-1013 FQDAQASSRN SKKTPLEKRE LKLARLKQLM QRPLSESDTD SNNSEDPKGT 751 800 ENSP00000261368/1-919 PVRKADRPRP QPIVESVESM DSAESLHLMI KKHTLASGGR RFPFSIKASK ENSBTAP00000029292/1-928 PVRKVDRPRP QPIVESVEGV DSAESLHLMI KKHTLAS-GR RFPFSIKASK bmy_20136T0/1-1000 PVRKADRPRP QPVVESVESM DSAESLHLMI KKHSLAS-GR RFPFSIKASK BACU013022/1-965 PVRKVDRPRP QPVSESVESM DGAESLHLMI KKHSLAS-GR RFPFSIKASK ENSTTRP00000008838/1-1013 PVRKVDRPRP QPVVESMESM DSAESLHLMI KKHSLAS-GR RFPFSIKASK 801 850 ENSP00000261368/1-919 SLDGHSPSPT SESSEPDLES QYPGSGSIPP NQPSGDPQQP SPDSTAAQKV ENSBTAP00000029292/1-928 SLEGHSPSPT SESSEPDLES QCPGSGNTPS SQPSGEAPQP SPDSTAAQKV bmy_20136T0/1-1000 SLEGHSPSPT SESSEPDLES QGPGSGTTPP SQPSGEPPQP SPDSTAAQKV BACU013022/1-965 SLEGHSPSPT SESSEPDSES QGPGSGTTPL SQPSGEPPQP SPDSTAAQKV ENSTTRP00000008838/1-1013 SLEGHSPSPT SESSEPDLES QSPGSGTVPP NQPSGELPQP SPDSTAAQKV 851 900 ENSP00000261368/1-919 ATSPKSALKS PSSKRRTSQN LKLRVTFEEP VVQMEQPSLE LNGEKDKDKG ENSBTAP00000029292/1-928 ATSPKSALKS PSSKRRTSQN SKLRVTFEEP VVQMEQTSLE LNGEKEREKG bmy_20136T0/1-1000 AMSPKSALKS PSSKRRTSQN LKLRVTFEEP VVQMEQTSLE LNGEKDRDKG BACU013022/1-965 ATSPKSALKS PSSKRRTSQN LKLRVTFEEP VVQMEQSSLE LNGEKDRDKG ENSTTRP00000008838/1-1013 ATSPKSALKS PSSKRRTSQN LKLRVTFEEP VVQMEQTSLE LNGEKDRDKG 901 950 ENSP00000261368/1-919 RTLQRTSTSN ESGDQLKRPF GAFRSIMETL SGNQNNNNNY QAANQLKTST ENSBTAP00000029292/1-928 RTLQRTSAAS ESGDQLKRPF GTFRSIMETL SGNQNNNNNY QASNQLKTST bmy_20136T0/1-1000 RTLQRTSASS EPGDQLKRPF GTFRSIMETL SGNQNNNNNY QASNQLKTST BACU013022/1-965 RTLQRTSASG EPGDQLKRPF GTFRSIMETL SGNQNNNNNY QASNQLKTST ENSTTRP00000008838/1-1013 RALQRTSASS EPGDQLKRPF GTFRSIMETL SGNQNNNNNY QASNQLKTST 951 1000 ENSP00000261368/1-919 LPLTSLGRK- TDAKGNPASS ASKGKNKAA- ---------- ---------- ENSBTAP00000029292/1-928 LPLTSLGRKV TDGKGNTGSS ASKGKNKAEM YGSCINLSSN TLIEEHLHNY bmy_20136T0/1-1000 LPLTSLGRKT TDGKGNPGSS ASKGKNKAEM YDSCLNLSSN TLIEEHLCDY BACU013022/1-965 LPLTSLGRKT TDGKGNPGSS ASKGKNKAEM YDSCLNLSSN MLIEEHLCDY ENSTTRP00000008838/1-1013 LPLTSLGRKT ADGKGNPGSS ASKGKNKAEM YDSCINLSSN TLIEEHLCDY 1001 1050 ENSP00000261368/1-919 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029292/1-928 AR-------- ---------- HDDISRKMKK SYSIKHVAEP ESKELFL--- bmy_20136T0/1-1000 ARYVVLGVYC SAVPCLRCEL HDLLHGNPGA PFPGADTKEV ENYNSFPK-- BACU013022/1-965 ARQMALTGSS SNSQTLGKC- SVSLNLAKQR VFSNTETDAP QTKRSTSTAG ENSTTRP00000008838/1-1013 AR-------- ---------- HNDINRKMKK SYSIKHVAEL ESKEFFL--- 1051 1100 ENSP00000261368/1-919 - ENSBTAP00000029292/1-928 - bmy_20136T0/1-1000 - BACU013022/1-965 Y ENSTTRP00000008838/1-1013 -