KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:38:51 2014 Check: 00 .. Name: ENSP00000424191/1-270 Len: 272 Check: 2593 Weight: 1.00 Name: ENSBTAP00000029297/1-272 Len: 272 Check: 115 Weight: 1.00 Name: bmy_04708T0/1-146 Len: 272 Check: 3417 Weight: 1.00 Name: BACU008095/1-271 Len: 272 Check: 5895 Weight: 1.00 Name: ENSTTRP00000004255/1-269 Len: 272 Check: 3171 Weight: 1.00 // 1 50 ENSP00000424191/1-270 --MPQAFLLG SIHEPAGALM EPQPCPGSLA ESFLEEELRL NAELSQLQFS ENSBTAP00000029297/1-272 MAVPQPFPSG PHLQPAGALM EPQPSPRSLA EGFLQEELRL NDELRQLQFS bmy_04708T0/1-146 MAVPQAFPPG PLHE-GGALV EPQPSPRSSA EGFLEEELRL NAELKQLQFS BACU008095/1-271 MAVPQAFPPG PLHE-GGALV EPQPSPRSSA EGFLEEERRL NAELKQLQFS ENSTTRP00000004255/1-269 --VPQAFPPG PLRE-GGALV EPQPSPRSSA EGFLEEELRL NAELKQLQFS 51 100 ENSP00000424191/1-270 EPVGIIYNPV EYAWEPHRNY VTRYCQGPKE VLFLGMNPGP FGMAQTGVPF ENSBTAP00000029297/1-272 ELVGIVYNPV EYAWEPHRSY VTRYCQGPKQ VLFLGMNPGP FGMAQTGVPF bmy_04708T0/1-146 EPVGIVYNPV EYAWEPHRSY VTRYCQGPKQ VLFLGMNPGP FGMAQTGVPF BACU008095/1-271 EPVGIVYNPV EYAWEPHRSY VTRYCQGPKQ VLFLGMNPGP FGMAQTGVPF ENSTTRP00000004255/1-269 EPVGVIYNPV EYAWEPHRSY VTRYCQGPKQ VLFLGMNPGP FGMAQTGVPF 101 150 ENSP00000424191/1-270 GEVSMVRDWL GIVGPVLTPP QEHPKRPVLG LECPQSEVSG ARFWGFFRNL ENSBTAP00000029297/1-272 GEVSVVRDWL GLGGPVRTPP QEHPKRPVLG LECPQSEVSG ARFWGFFRNL bmy_04708T0/1-146 GEVSVVRDWL GIGGPVQSPP QEHPKRPVLG LECPQSEGPG QS-------- BACU008095/1-271 GEVSVVRDWL GIGGPVQTPP QEHPKRPVLG LECPQSEVSG ARFWGFFRNL ENSTTRP00000004255/1-269 GEVSVVRDWL GIGGPVQTPP QEHPKRPVLG LECPQSEVSG ARFWGFFRNL 151 200 ENSP00000424191/1-270 CGQPEVFFHH CFVHNLCPLL FLAPSGRNLT PAELPAKQRE QLLGICDAAL ENSBTAP00000029297/1-272 CGQPEVFFRH CFVHNLCPLL LLAPSGRNIT PAELPAKQRE QLLGVCDAAL bmy_04708T0/1-146 ---------- ---------- ---------- ---------- ---------- BACU008095/1-271 CGQPEVFFRH CFVHNLCPLL LLAPSGRNLT PAELPAKQRE QLLGVCDAAL ENSTTRP00000004255/1-269 CGQPEVFFRH CFVHNLCPLL LLAPSGRNLT PAELPAKQRE QLLGVCDAAL 201 250 ENSP00000424191/1-270 CRQVQLLGVR LVVGVGRLAE QRARRALAGL MPEVQVEGLL HPSPRNPQAN ENSBTAP00000029297/1-272 CRQVQLLGVR LVVGVGRVAE QRARRALASL MPEVQVEGLL HPSPRSPQAN bmy_04708T0/1-146 ---------- --VGHGC--- ---------- ---------- ---------- BACU008095/1-271 CRQVQLLGVR LVVGVGRLAE QRARRALAGL MPEVQVEGLL HPSPRNPQAN ENSTTRP00000004255/1-269 CRQVQLLGVR LVVGVGRLAE QRARRALASL MPEVQVEGLL HPSPRNPQAN 251 300 ENSP00000424191/1-270 KGWEAVAKER LNELGLLPLL LK ENSBTAP00000029297/1-272 KGWEAVAKER LNELGLLPLL TS bmy_04708T0/1-146 ---------- ---------- -- BACU008095/1-271 KGWEVVAKER LNELGLLPLL TK ENSTTRP00000004255/1-269 KGWEVVAKER LNELGLLPLL TK