KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:38:52 2014 Check: 00 .. Name: ENSTTRP00000014323/1-438 Len: 551 Check: 8189 Weight: 1.00 Name: bmy_21314T0/1-549 Len: 551 Check: 5785 Weight: 1.00 Name: ENSP00000296666/1-445 Len: 551 Check: 5159 Weight: 1.00 Name: BACU013046/1-449 Len: 551 Check: 6506 Weight: 1.00 Name: ENSBTAP00000029302/1-445 Len: 551 Check: 4675 Weight: 1.00 // 1 50 ENSTTRP00000014323/1-438 MMEESGIETT PPGTPPPSSA GLAVAATAAQ PSSPPAPLXX XXXXXXXXXX bmy_21314T0/1-549 MMEESGIETT PPGTPPPSSA GLAVAAAAAQ PSSPPAPLAA ASAFSSPSVS ENSP00000296666/1-445 MMEESGIETT PPGTPPPNPA GLAATAMSST P----VPLAA TSSFSSPNVS BACU013046/1-449 MMEESGIETT PPGTPPPSSA GLAVAAAAAQ PSPPAAPLAA ASTFSSPSVS ENSBTAP00000029302/1-445 MMEESGIETT PPGTPPPNSG GLASAALSSS P----APLAA ASTFSSPSAS 51 100 ENSTTRP00000014323/1-438 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_21314T0/1-549 -SVQPLPPHT YSTPQQSLPP VRPSPPLPFV PPSPVPSGPP LITSSPPHVS ENSP00000296666/1-445 -SMESFPPLA YSTPQPPLPP VRPSAPLPFV PPPAVPSVPP LVTSMPPPVS BACU013046/1-449 -SVQPLPPHT YSTPQQSLPP VRPSPPLPFV PPSPVPSGPP LITSSPPHVS ENSBTAP00000029302/1-445 -SVQSLPPQV YSTPQPSLPP VQPAAPLPFV PSSPVPSVPP LVTSLPPPAS 101 150 ENSTTRP00000014323/1-438 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX QGPPTSGFSV GSAYDITRGH bmy_21314T0/1-549 PPTAAAFSNP PLSHFPPSTS APNTLLSAPA SGPPTSGFSV GAAYDITRGH ENSP00000296666/1-445 PSTAAAFGNP PVSHFPPSTS APNTLLPAPP SGPPISGFSV GSTYDITRGH BACU013046/1-449 PPTAAAFSNP PLSHFPPSTS APNTLLSAPA SGPPTSGFSV GSAYDITRGH ENSBTAP00000029302/1-445 PPTAAAFSHP PLSHFPPSTS APNTLLSAPP SGPPTSGFSV GSTYDITRGH 151 200 ENSTTRP00000014323/1-438 AGRAPQTPLM PSFSAPPVTX XXXXXXXXXX XXXXXXXXXX XXXXITFPEQ bmy_21314T0/1-549 AGRAPQTPLM PSFSAPPVTG ILPTPITQQA GLTSLAQGTG TTSAITFPEE ENSP00000296666/1-445 AGRAPQTPLM PSFSAPSGTG LLPTPITQQA SLTSLAQGTG TTSAITFPEE BACU013046/1-449 AGRAPQTPLM PSFSAPPVTG ILPTPITQQA GLTSLAQGTG TTPAITFPEE ENSBTAP00000029302/1-445 AGRAPQTPLM PSFSAPPVTG ILPTPITQQA GLTSVAQGTG TTSAITFPEE 201 250 ENSTTRP00000014323/1-438 QEDPRIGRGQ DEASAGGLWG FIKGVAGNPM VKSVLDKTKH SVESMITTLD bmy_21314T0/1-549 QEDPRIGRGQ DEASAGGLWG FIKGVAGNPM VKSVLDKTKH SVESMITTLD ENSP00000296666/1-445 QEDPRITRGQ DEASAGGIWG FIKGVAGNPM VKSVLDKTKH SVESMITTLD BACU013046/1-449 QEDPRIGRGQ DEASAGGLWG FIKGVAGNPM VKSVLDKTKH SVESMITTLD ENSBTAP00000029302/1-445 QEDPRIGRGQ DEASAGGLWG FIKGVAGNPM VKSVLDKTKH SVESMITTLD 251 300 ENSTTRP00000014323/1-438 PGMAPYIKSG GELDIVVTSN KEVKVAAVRD AFQEVFGLAV VIGEAGQSSI bmy_21314T0/1-549 PGMAPYIKSG GELDIVVTSN KEVKVAAVRD AFQEVFGLAV VIGEAGQSSI ENSP00000296666/1-445 PGMAPYIKSG GELDIVVTSN KEVKVAAVRD AFQEVFGLAV VVGEAGQSNI BACU013046/1-449 PGMAPYIKSG GELDIVVTSN KEVKVAAVRD AFQEVFGLAV VIGEAGQSSI ENSBTAP00000029302/1-445 PGMAPYIKSG GELDIVVTSN KEVKVAAVRD AFQEVFGLAV VLGEAGQSNI 301 350 ENSTTRP00000014323/1-438 APQPVGYAAG LKGAQERIDS LRRTGVIHEK QTAVSVENFI AELLPDXXXX bmy_21314T0/1-549 APQPVGYAAG LKGAQERIDS LRRTGVIHEK QTAVSVENFI AELLPDKWFD ENSP00000296666/1-445 APQPVGYAAG LKGAQERIDS LRRTGVIHEK QTAVSVENFI AELLPDKWFD BACU013046/1-449 APQPVGYAAG LKGAQERIDS LRRTGVIHEK QTAVSVENFI AELLPDKWFD ENSBTAP00000029302/1-445 APQPVGYAAG LKGAQERIDS LRRTGVIHEK QTAVSVENFI AELLPDKWFD 351 400 ENSTTRP00000014323/1-438 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XAQSLTPQDY SL-------- bmy_21314T0/1-549 IGCLIVEDPV HGIHLEAFTQ ATPVPLEFVQ QP-FLFAFQF SIPSMLFHYL ENSP00000296666/1-445 IGCLVVEDPV HGIHLETFTQ ATPVPLEFVQ QAQSLTPQDY NL-------- BACU013046/1-449 IGCLIVEDPV HGIHLEAFTQ ATPVPLEFVQ QAQSLTPQDY SL-------- ENSBTAP00000029302/1-445 IGCLIVEDPV HGIHLEAFTQ ATPVPLEFVQ QAQSLTPQDY NL-------- 401 450 ENSTTRP00000014323/1-438 ------RWSG LLVTVGEVLE KSLLNVSRTD W--------H MTF------- bmy_21314T0/1-549 PTFVFQRSLS RIINIDIPLE DNFLRIPKQQ WQSYSVVWVQ MIFLHLCSQN ENSP00000296666/1-445 ------RWSG LLVTVGEVLE KSLLNVSRTD W--------H MAF------- BACU013046/1-449 ------RWSG LLVTVGEVLE KNLLNVSRTD W--------H VTF------- ENSBTAP00000029302/1-445 ------RWSG LLVTVGEVLE KSLLNVSRTD W--------H MAF------- 451 500 ENSTTRP00000014323/1-438 ---------- ---------- ---------- ---------- ---------- bmy_21314T0/1-549 YLLNLINTMQ DDILDKANFV QVTGRGKKMA TETKLAKFER AALALLLCQE ENSP00000296666/1-445 ---------- ---------- ---------- ---------- ---------- BACU013046/1-449 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029302/1-445 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000014323/1-438 --TGMSRRQM IYSAAKAVA- ---------- ---------- ---------- bmy_21314T0/1-549 TASGSVKDAL ISEGERSQLG RYKNSLSWKR ARPGLRQQCP GQMKARCPIA ENSP00000296666/1-445 --TGMSRRQM IYSAARAIAG MYKQRLPPRT V--------- ---------- BACU013046/1-449 --TGMSRRQM IYSAAKAVAG MYKQRLSPRT M--------- ---------- ENSBTAP00000029302/1-445 --TGMSRRQM IYSAAKAIAG MYKQRLPPRT V--------- ---------- 551 600 ENSTTRP00000014323/1-438 - bmy_21314T0/1-549 R ENSP00000296666/1-445 - BACU013046/1-449 - ENSBTAP00000029302/1-445 -