KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:02 2014 Check: 00 .. Name: ENSP00000446278/1-370 Len: 483 Check: 4794 Weight: 1.00 Name: ENSBTAP00000029331/1-376 Len: 483 Check: 514 Weight: 1.00 Name: ENSTTRP00000002830/1-370 Len: 483 Check: 803 Weight: 1.00 Name: bmy_16067T0/1-481 Len: 483 Check: 8241 Weight: 1.00 Name: BACU007558/1-370 Len: 483 Check: 3495 Weight: 1.00 // 1 50 ENSP00000446278/1-370 ---------- ---------- -MLAP----- ---------- ---------- ENSBTAP00000029331/1-376 ---------- ---------- -MLAP----- ---------- ---------- ENSTTRP00000002830/1-370 ---------- ---------- -MLAP----- ---------- ---------- bmy_16067T0/1-481 MQLQVAGGGA EGKEAEPFSL DRILPWQWPW ERKMGRLSDI LTSSVASASV BACU007558/1-370 ---------- ---------- -MLAP----- ---------- ---------- 51 100 ENSP00000446278/1-370 --GSSPGQRG R--------- ---------- ---------- ---LAL---- ENSBTAP00000029331/1-376 --GGSPEPRG T--------- ---------- ---KGHTW-- ---LAL---- ENSTTRP00000002830/1-370 --GSGPELS- ---------- ---------- ------TWF- ---APL---- bmy_16067T0/1-481 VSGRGAGSRG DPPCGDPGCP ALSVHMDVLR GVSSVFTWSA SAKAPLVVGP BACU007558/1-370 --GSGPELR- ---------- ---------- ------TWF- ---APL---- 101 150 ENSP00000446278/1-370 ---------- ---------Q WRQVSW---- ----ITCWIA LYAVEALPTC ENSBTAP00000029331/1-376 ---------- ---------- WRRISW---- ----LACWIA LCTAEAVPAC ENSTTRP00000002830/1-370 ---------- ---------- WRQISW---- ----LTCWIA LCTAEAAPAC bmy_16067T0/1-481 EGISARPRAG NWMGGEGGGS WRPAVLPSPV CPPGLTCWIA LCTAEALPAC BACU007558/1-370 ---------- ---------- WRQISW---- ----LTCWIA LCTAEALPAC 151 200 ENSP00000446278/1-370 PFSCKCDSRS LEVDCSGLGL TTVPPDVPAA TRTLLLLNNK LSALPSWAFA ENSBTAP00000029331/1-376 PFPCTCDGRG LQVDCSGLGL TAPPPDLPAA TRSLLLLNNR LSSLPGGAFA ENSTTRP00000002830/1-370 PLPCTCDGHG LQVDCSGRGL AALPADLPAA TRSLLLLNNR LSSLPAGAFA bmy_16067T0/1-481 PLPCTCDGHG LQVDCSGRGL TALPPDLPAA TRTLLLLNNR LSFLPGGAFA BACU007558/1-370 PLPCTCDGHG LQVDCSGRGL TALPPDLPAA TRTLLLLNNR LSFLPGGAFA 201 250 ENSP00000446278/1-370 NLSSLQRLDL SNNFLDRLPR SIFGDLTNLT ELQLRNNSIR TLDRDLLRHS ENSBTAP00000029331/1-376 NLSGLQRLDL SNNFLDRLPR MAFGDLANLT ELQLRNNSLR ALDATLLRPL ENSTTRP00000002830/1-370 GLSGLQRLDL SNNFLDGLPR AAFGGLANLT ELQLRNNSLR ALDPELLRPL bmy_16067T0/1-481 SLSGLQRLDL SNNFLDGLPR TAFGELANLT ELQLRNNSLR ALDPELLRPL BACU007558/1-370 SLSGLQRLDL SNNFLDGLPR TAFGELANLT ELQLRNNSLR ALDPELLRPL 251 300 ENSP00000446278/1-370 PLLRHLDLSI NGLAQLPPGL FDGLLALRSL SLRSNRLQNL DRLTFEPLAN ENSBTAP00000029331/1-376 PRLRHLDLSL NGLSRLPPGL FDGLPALRSL SLRANRLQSL DRRTFEPLAG ENSTTRP00000002830/1-370 ARLRHLDLSL NGLARLPPGL FDGLPALRSL FLRANRLQSL DRRTFEPLAS bmy_16067T0/1-481 PRLRHLDLSL NGLARLPPGL FDGLPALRSL FLRANRLQSL DRRTFEPLAG BACU007558/1-370 PRLRHLDLSL NGLARLPPGL FDGLPALRSL FLRANRLQSL DRRTFEPLAG 301 350 ENSP00000446278/1-370 LQLLQVGDNP WECDCNLREF KHWMEWFSYR --GGRLDQLA CTLPKELRGK ENSBTAP00000029331/1-376 LQLLQVADNP WECDCHLRDF KRWLEWFSYR DAGGRLDQLA CTLPKELRGK ENSTTRP00000002830/1-370 LQLLQVGDNP WECDCHLRDF KHWLEWFSYR --GGRLDQLA CTLPKELRGK bmy_16067T0/1-481 LQLLQVGDNP WECDCHLRDF KHWLEWFSYR --GGRLDQLT CTLPKELRGK BACU007558/1-370 LQLLQVGDNP WECDCHLRDF KHWLEWFSYR --GGRLDQLT CTLPKELRGK 351 400 ENSP00000446278/1-370 DMRMVPMEMF NYCSQLEDEN SSAGLDIPGP PCTKASPEPA KPKPGAEPEP ENSBTAP00000029331/1-376 DMRMVPMEMF NYCSQLEDQN SSAGQEVSGP PCTKASPEPA KPKPGPEPEP ENSTTRP00000002830/1-370 DMRVVPMEMF NYCSQLEDQS SSAGLEVPGP PCTKASPEPP KPKPGPEPEP bmy_16067T0/1-481 DMRAVPMEMF NYCSQLDGHK SSAGLEVPGP PCTKASPEPP KPKPGPEPEP BACU007558/1-370 DMRAVPMEMF NYCSQLDGQQ SSAGLEVPGP PCTKASPEPP KPKPGPEPEP 401 450 ENSP00000446278/1-370 EPSTACPQKQ RHRPASVRRA MGTVIIAGVV CGVVCIMMVV AAAYGCIYAS ENSBTAP00000029331/1-376 EPSTACPQKQ RPRPVSVRRA IGTVIIAGVV CGVVCIMMVV AAAYGCIYAS ENSTTRP00000002830/1-370 EPSTACPQKQ RPRPVSVRRA VGTVIIAGVL CGVVCIMMVV AAAYGCIYAS bmy_16067T0/1-481 EPSTACPQKQ RPRPVSVRRA IGTVIIAGVV CGVVCIMMVV AAAYGCIYAS BACU007558/1-370 EPSTACPQKQ RPRPVSVRRA IGTVIIAGVV CGVVCIMMVV AAAYGCIYAS 451 500 ENSP00000446278/1-370 LMAKYHRELK KRQPLMGDPE GEHEDQKQIS SVA ENSBTAP00000029331/1-376 LMAKYHRELK KRQPLMGDPE GEQEDQKQIS SVA ENSTTRP00000002830/1-370 LMAKYHRELR KRQPLMGDAE GEHEDRKQVS SVA bmy_16067T0/1-481 LMAKYHRELK KRQPLMGDPE GEHEDRKQIS SVA BACU007558/1-370 LMAKYHRELK KRQPLMGDPE GEHEDQKQIS SVA