KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:05 2014 Check: 00 .. Name: ENSTTRP00000015947/1-726 Len: 773 Check: 6598 Weight: 1.00 Name: ENSP00000265641/1-773 Len: 773 Check: 5843 Weight: 1.00 Name: ENSBTAP00000029336/1-773 Len: 773 Check: 4128 Weight: 1.00 Name: bmy_17673T0/1-433 Len: 773 Check: 6436 Weight: 1.00 Name: BACU003562/1-773 Len: 773 Check: 5520 Weight: 1.00 // 1 50 ENSTTRP00000015947/1-726 ---------- ---------- ---------- ---------- -------NGI ENSP00000265641/1-773 MAEAHQAVAF QFTVTPDGID LRLSHEALRQ IYLSGLHSWK KKFIRFKNGI ENSBTAP00000029336/1-773 MAEAHQAVAF QFTVTPDGID LRMSHEALRQ IYLSGLHSWK KKFIRFKNGI bmy_17673T0/1-433 MAEAHQAVAF QFTVTPDGID LRLSHEALRQ IYLSGLHSWK KKFIRFKNGI BACU003562/1-773 MAEAHQAVAF QFTVTPDGID LRLSHEALRQ IYLSGLHSWK KKFIRFKNGI 51 100 ENSTTRP00000015947/1-726 ITGVYPASPS SWLIVVVGVV STMYTRIDPS LGIIAKINRT LDRTGYMSSQ ENSP00000265641/1-773 ITGVYPASPS SWLIVVVGVM TTMYAKIDPS LGIIAKINRT LETANCMSSQ ENSBTAP00000029336/1-773 ITGVYPASPS SWLIVVVGVM STMYAKIDPS LGIIAKINRT LDTTGCMSSQ bmy_17673T0/1-433 ITGVYPASPS SWLIVVVGVV STMYTKIDPS LGIIAKINRT LDRTGCMSSQ BACU003562/1-773 ITGVYPASPS SWLIVVVGVV STMYTKIDPS LGIIAKINRT LDRTGCMSSQ 101 150 ENSTTRP00000015947/1-726 TKKVVSGVLF GTGLWVALIF TMRYSLKVLL SYHGWMFAQH GKISRATKVW ENSP00000265641/1-773 TKNVVSGVLF GTGLWVALIV TMRYSLKVLL SYHGWMFTEH GKMSRATKIW ENSBTAP00000029336/1-773 TKKVVSGVIF GTGLWVALIV TMRYSLKVLL SYHGWMFTQH GRLSRTTKIW bmy_17673T0/1-433 TKKVVSGVLF GTGLWVALII TMRYSLK--- ---------- ---------- BACU003562/1-773 TKKVVSGVLF GTGLWVALII TMRYSLKVLL SYHGWMFAQH GKLSRATKIW 151 200 ENSTTRP00000015947/1-726 MGMVKIFSGR KPMLYSFQTS LPRLPVPAVQ DTVNRXXXXX XXXXXXXXXX ENSP00000265641/1-773 MGMVKIFSGR KPMLYSFQTS LPRLPVPAVK DTVNRYLQSV RPLMKEEDFK ENSBTAP00000029336/1-773 MFMVKIFSGR KPMLYSFQTS LPRLPVPAVQ DTVNRYLESV KPLMKEGDFT bmy_17673T0/1-433 -GMVKIFSGR KPMLYSFQTS LPRLPVPAVQ DTVNRYLESV KPLMKEGDFT BACU003562/1-773 MGMVKIFSGR KPMLYSFQTS LPRLPVPAVQ DTVNRYLESV KPLMKEGDFT 201 250 ENSTTRP00000015947/1-726 XXXXXXXXXX XXXXXXXXXX XXXKSWWATN YVSDWWEEYI YLRGRGPLMV ENSP00000265641/1-773 RMTALAQDFA VGLGPRLQWY LKLKSWWATN YVSDWWEEYI YLRGRGPLMV ENSBTAP00000029336/1-773 RMTALAQDFA VNLGPRLQWY LKLKSWWATN YVSDWWEEYI YLRGRGPLMV bmy_17673T0/1-433 RMTALAQDFA INLGPRLQWY LKLKSWWATN YVSDWWEEYI YLRGRGPLMV BACU003562/1-773 RMTALAQDFA INLGPRLQWY LKLKSWWATN YVSDWWEEYI YLRGRGPLMV 251 300 ENSTTRP00000015947/1-726 NSNYYAMDLL YITPTHIQAA RAGNGIHAIL LYRRKLDREE IKPIFLLGST ENSP00000265641/1-773 NSNYYAMDLL YILPTHIQAA RAGNAIHAIL LYRRKLDREE IKPIRLLGST ENSBTAP00000029336/1-773 NSNYFAMDLL YIIPTHIQAA RAGNGIHAIL LYRRKLDREE IKPILLLGST bmy_17673T0/1-433 NSNYYAM--- ---------- ---------- ---------- ---------- BACU003562/1-773 NSNYYAMDLL YITPTHIQAA RAGNGIHAIL LYRRKLDREE IKPIFLLGST 301 350 ENSTTRP00000015947/1-726 VPLCSAQWER MFNTSRIPGE ETDTLQHIRD SRHIVVFHKG RYFKVWLYHD ENSP00000265641/1-773 IPLCSAQWER MFNTSRIPGE ETDTIQHMRD SKHIVVYHRG RYFKVWLYHD ENSBTAP00000029336/1-773 IPLCSAQWER MFNTSRIPGE ETDTIQHLRD SKHIVVFHRG RYFKVWLYHD bmy_17673T0/1-433 ---------- ---------- ------HLRD SRHIVVFHKG RYFKVWLYHD BACU003562/1-773 VPLCSAQWER MFNTSRIPGE ETDTLQHLRD SRHMVVFHKG RYFKVWLYHD 351 400 ENSTTRP00000015947/1-726 GRLLKPREIE QQMQRILDDP SEPQAGEAKL AALTAGDRVP WARCRQAYFG ENSP00000265641/1-773 GRLLKPREME QQMQRILDNT SEPQPGEARL AALTAGDRVP WARCRQAYFG ENSBTAP00000029336/1-773 GRLLRPREIE QQVQRILEDP SEPQPGEAKL AALTAADRVP WARCRQAYFG bmy_17673T0/1-433 GRLLKPREIE QQMQRILDDP SEPQAGEAKL AALTAGD--- ---------- BACU003562/1-773 GRLLKPREIE QQMQRILDDP SEPQAGEAKL AALTAGDRVP WAKCRQAYFG 401 450 ENSTTRP00000015947/1-726 HGKNKQSLDA VEKAAFFVTL DETEQGYREE DPVTSMDSYA KSLLHGRCFD ENSP00000265641/1-773 RGKNKQSLDA VEKAAFFVTL DETEEGYRSE DPDTSMDSYA KSLLHGRCYD ENSBTAP00000029336/1-773 HGKNKQSLDA VEKAAFFVTL DETEQGYREE DPETSMDSYA KSLLHGRCFD bmy_17673T0/1-433 ---------- -SHINIFVS- ---------- ---------- -------C-- BACU003562/1-773 HGKNKQSLDA VEKATFFVTL DETEQGYREE DPVTSMDSYA KSLLHGRCFD 451 500 ENSTTRP00000015947/1-726 RWFDKSITFV IFKNGKMGIN AEHSWADAPI IGHLWEYVLA TDSFQLGYAE ENSP00000265641/1-773 RWFDKSFTFV VFKNGKMGLN AEHSWADAPI VAHLWEYVMS IDSLQLGYAE ENSBTAP00000029336/1-773 RWFDKSFTFI VFKNGKMGIN AEHSWADAPI MGHLWEYVMA TDSFQLGYTE bmy_17673T0/1-433 RWFDKSITFV IFKNGKMGIN AEHSWADAPI IGHLWEYVLA TDSFQLGYAE BACU003562/1-773 RWFDKSITFV IFKNGKMGIN AEHSWADAPI IGHLWEYVLA TDSFQLGYAE 501 550 ENSTTRP00000015947/1-726 DGHCKGDTNS NIPYPTRLQW DIPQEXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000265641/1-773 DGHCKGDINP NIPYPTRLQW DIPGECQEVI ETSLNTANLL ANDVDFHSFP ENSBTAP00000029336/1-773 DGHCKGDTNP NIPYPTRLQW DIPEECQEVI ETSLSSANLL ANDVDFHSFP bmy_17673T0/1-433 DGHCKGDTNP NIPYPTRLQW DIPQECQEVI ETSLSSANLL ASDVDFCSFL BACU003562/1-773 DGHCKGDTNP NIPYPTRLQW DIPQECQEVI ETSLSSANLL ASDVDFCSFL 551 600 ENSTTRP00000015947/1-726 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX DMGKFSLTYE ASMTRLFREG ENSP00000265641/1-773 FVAFGKGIIK KCRTSPDAFV QLALQLAHYK DMGKFCLTYE ASMTRLFREG ENSBTAP00000029336/1-773 FRTFGKGLIK KCKTSPDAFV QLSLQLAHYK DMGKFSLTYE ASMTRLFREG bmy_17673T0/1-433 FSAFGKGLIK KCRTSPDAFV QLSLQLAHYK ---------- ---------- BACU003562/1-773 FSAFGKGLIK KCRTSPDAFV QLSLQLAHYK DMGKFSLTYE ASMTWIFREG 601 650 ENSTTRP00000015947/1-726 RTETVRSCTT ESCNFVLAMV DPTQTVEQRL KLFKIASKKH QHLCHLAMTG ENSP00000265641/1-773 RTETVRSCTT ESCDFVRAMV DPAQTVEQRL KLFKLASEKH QHMYRLAMTG ENSBTAP00000029336/1-773 RTETVRSCTA ESCSFVLAMV DPTQTVEQKL KLFRIASEKH QLLYRLAMTG bmy_17673T0/1-433 ---------- ---------- ---------- ---------- ---------- BACU003562/1-773 RTETVRSCTT ESCNFVLAMV DPTQTVEQRL KLFKIAAKKH QHLCRLAMTG 651 700 ENSTTRP00000015947/1-726 SGIDRHLFCL YVVSKYLAVD SPFLKEVLSE PWRLSTSQTP QQQVELFNLE ENSP00000265641/1-773 SGIDRHLFCL YVVSKYLAVE SPFLKEVLSE PWRLSTSQTP QQQVELFDLE ENSBTAP00000029336/1-773 AGIDRHLFCL YVVSKYLAVD SPFLKEVLAE PWRLSTSQTP PQQVELFNLD bmy_17673T0/1-433 ---------- ---------- ---------- ---------- ---------- BACU003562/1-773 SGIDRHLFCL YVVSKYLAVD SPFLKEVLSE PWRLSTSQTP QQQVELFNLE 701 750 ENSTTRP00000015947/1-726 RNPEYVSSGG GFGPVADDGY GVSYILVGEK LISFHISSKF SCPETDSHRF ENSP00000265641/1-773 NNPEYVSSGG GFGPVADDGY GVSYILVGEN LINFHISSKF SCPETDSHRF ENSBTAP00000029336/1-773 RNPDYVSCGG GFGPVADDGY GVSYILVGED LINFHISSKF SCPETDSHRF bmy_17673T0/1-433 ---------- ---------- ---------- ---------- ---------- BACU003562/1-773 RNPEYVSSGG GFGPVADDGY GVSYILVGEK LISFHISSKF SCPETDSHRF 751 800 ENSTTRP00000015947/1-726 GKNLKQAMID IMSLFGLSSN SKK ENSP00000265641/1-773 GRHLKEAMTD IITLFGLSSN SKK ENSBTAP00000029336/1-773 GKNLREAMTD IISLFGFSPN SKK bmy_17673T0/1-433 ---------- ---------- --- BACU003562/1-773 GKNLKQAMID IVSLFGLSSN SKK