KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:11 2014 Check: 00 .. Name: ENSP00000269383/1-517 Len: 520 Check: 1937 Weight: 1.00 Name: ENSBTAP00000029353/1-513 Len: 520 Check: 4451 Weight: 1.00 Name: ENSTTRP00000015060/1-511 Len: 520 Check: 4115 Weight: 1.00 Name: bmy_13800T0/1-489 Len: 520 Check: 6849 Weight: 1.00 Name: BACU011527/1-494 Len: 520 Check: 8850 Weight: 1.00 // 1 50 ENSP00000269383/1-517 MAAQLLEEKL TCAICLGLYQ DPVTLPCGHN FCGACIRDWW DRCGKACPEC ENSBTAP00000029353/1-513 MAAQQLEDKL TCSICLELYK EPVTLLCGHN FCGACIRDWW GLCEKVCPEC ENSTTRP00000015060/1-511 MAAPWLEDRL TCAICLGLYR DPVTLFCGHN FCRACIQDWL GRSEKVCPEC bmy_13800T0/1-489 MASQSLEDRL TCAICLGLYQ DPVTLLCGHN FCWACIRDWW GRCEKVCPEC BACU011527/1-494 MASQSVEDWL TCAICLGLYQ DPVTLLCGHN FCWACIRDCW GRWEKVCPEC 51 100 ENSP00000269383/1-517 REPFPDGAEL RRNVALSGVL EVVRAGPARD PGPDPG-PGP DPAARCPRHG ENSBTAP00000029353/1-513 REPFPDGAEL RRNVALSGVV EELRATPG-- --PGPD---P SHGARCPRHG ENSTTRP00000015060/1-511 REPFPDSAEL RRNVALSGVV EDLRVRPA-- --PDPG---- -PGACCRRHG bmy_13800T0/1-489 RAPFPDNAEL RRNVALSGVL EELRARPA-- --PDPG---- -PGXRCPRHG BACU011527/1-494 RAPFPDSAEL RRNVALSGVV EELRARPA-- --PDPPFPGP VPGACCPRHG 101 150 ENSP00000269383/1-517 RPLELFCRTE GRCVCSVCTV RECRLHERAL LDAERLKREA QLRASLEVTQ ENSBTAP00000029353/1-513 QPLELFCRTE GLCVCCVCTV RECRLHERVL LDAERRAREA QLRATLEVTQ ENSTTRP00000015060/1-511 RPLELFCRTE GLCVCSVCTV RECRLHERTL LDAERREREA QLRATLEVTQ bmy_13800T0/1-489 RPLELFCRTE GLCVCSVCTV RECRLHERTL LDAERREREA QLRATLEVTQ BACU011527/1-494 RPLELFCRTE GLCVCSVCTV RECRLHERTL LDAERREREA QLRATLEVAQ 151 200 ENSP00000269383/1-517 QQATQAEGQL LELRKQSSQI QNSACILASW VSGKFSSLLQ ALEIQHTTAL ENSBTAP00000029353/1-513 QQAAQAQRQL QELQQRSSQI QNSACTLTSV ISGKFSCLLQ ALEMRRVRAL ENSTTRP00000015060/1-511 QQATQAESQL QELQQRSSQI QSSACTLTSV ISGKFNRLLQ ALDMQRDLAL bmy_13800T0/1-489 QQATQAESQL QELQQRSSQI QSSACTLTSV ISGKFSHLLQ ALEMQRDLAL BACU011527/1-494 QQATQAESQL QELQQRSSQI QSSACTLTSV ISGKFSRLLQ ALEMQRDLAL 201 250 ENSP00000269383/1-517 RSIEVAKTQA LAQARDEEQR LRVHLEAVAR HGCRIRELLE QVDEQTFLQE ENSBTAP00000029353/1-513 RDINVAKTQA LEQAQQEKQR LQGHLEAVSF CDRRIRHLLE HLDDWTFLQE ENSTTRP00000015060/1-511 RNIEVAKTQA LEQARDEKQR LQGHLEALSC CDHRIRNLLE QLDDRTFLQE bmy_13800T0/1-489 RDIEVAKTQA LEQARDEKQR LQGHLEALSC CDHRIRNLLE QLDDRTFLQE BACU011527/1-494 RDIEVAKTQA LEQARDEKQR LQGHLEALSC CDHRIRNLLE QLDDRTFLQE 251 300 ENSP00000269383/1-517 SQLLQPPGPL GPLTPLQWDE DQQLGDLKQL LSRLCGLLLE EGSHPGAPAK ENSBTAP00000029353/1-513 SQQLVPPGPL GPLTLPQWDE DQQLGGLKES LSQLCALLLE EGAHSGVPTE ENSTTRP00000015060/1-511 SQLLAPPGPL GPLTLPHWDE DQQLGGLKES LSQLCALLLE EGGHPGAPAE bmy_13800T0/1-489 SQLLAPPGPL GPLTLPHWDE DQQLGGLKES LSQLCALLLE EGGHPGAPAE BACU011527/1-494 SQLLAPPGPL GPLTLPHWDE DQQLGGLKES LSQLCALLLE EGGHPGAPAE 301 350 ENSP00000269383/1-517 PVDLAPVEAP GPLAPVPSTV CPLRRKLWQN YRNLTFDPVS ANRHFYLSRQ ENSBTAP00000029353/1-513 AADLGSVESP GPLAPVLSPV CPLRRRLWQN YRNLTFDPVS ANRHLYLSQQ ENSTTRP00000015060/1-511 AADFGSMEAP GPPAPVASLV CPLRRKLWQN YRNLTFDPIS ANRHFYLSQQ bmy_13800T0/1-489 AADLGSMD-- ---------- ---------- YRNLTFDPVS ANRHFCLSQQ BACU011527/1-494 AADLGSMD-- ---------- ---------- YRNLTFDPIS ANRHFCLSQQ 351 400 ENSP00000269383/1-517 DQQVKHCRQS RGPGGPGSFE LWQVQCAQSF QAGHHYWEVR ASDHSVTLGV ENSBTAP00000029353/1-513 DQRVKHLLKP RGPDGPGSFE LWQVQCAQSF QAGQHYWEVR ASSHSVTLGV ENSTTRP00000015060/1-511 DRQVKHCRKP RGPDGPGSFE LWQVQCAQSF QAGQHYWEVR VSNHSVTLGV bmy_13800T0/1-489 DQRVKHCRKP QGPDGPGSFE LWQVQCAQSF QAGRHYWEVR ASNHSVTLGV BACU011527/1-494 DRRVKHCRKP QGPDGPGSFE LWQVQCAQSF QAGRHYWEVR ASSHSVTLGV 401 450 ENSP00000269383/1-517 SYPQLPRCRL GPHTDNIGRG PCSWGLCVQE DSLQAWHNGE AQRLPGVSGR ENSBTAP00000029353/1-513 AYSELTRRRQ GPHTDNIGRG PSSWGLCIQE DCTQAWHDGK AQRLPVVSGR ENSTTRP00000015060/1-511 AYSELTRRKL GPHTDNIGRG PSSWGLCIQE DSTQAWHNGE ARRLPGVSGR bmy_13800T0/1-489 AYSELTRRKL GPHTDNIGRG PSSWGLCIQE DSAQAWHNGE ARRLPGVSGR BACU011527/1-494 AYSELTRRKL GPHTDNIGRG PSSWGLCIQE DSAQAWHNGE ARRLPGVSGR 451 500 ENSP00000269383/1-517 LLGMDLDLAS GCLTFYSLEP QTQPLYTFHA LFNQPLTPVF WLLEGRTLTL ENSBTAP00000029353/1-513 LLGVDLNLAS GCLTFYSLEP KTQPLHTFHA IFTRPLYPIF WLLEGRTLTL ENSTTRP00000015060/1-511 LLGMDLDLTS GCLTFYSLEP ETQHLYTFHA IFSRPLHPVF WLLEGRTLTL bmy_13800T0/1-489 LLGMDLDLTS GCLTFYSLEP ETQPLYTFHA IFARPLYPVF WLLEGRTLTL BACU011527/1-494 LLGVDLDLTS GCLTFYSLEP ETQSLYTFHA IFARPLYPVF WLLEGRTLTL 501 550 ENSP00000269383/1-517 CHQPGAVFPL GPQEEV--LS ENSBTAP00000029353/1-513 CHQPEATLPP GLQEEASGLS ENSTTRP00000015060/1-511 CHRPEAKLPP GLQEEASGLS bmy_13800T0/1-489 CHQPEAKLPP GLQEEASGLS BACU011527/1-494 CHRPEAKLPP GLQEEASGLR