KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:15 2014 Check: 00 .. Name: ENSTTRP00000004436/1-776 Len: 796 Check: 962 Weight: 1.00 Name: ENSP00000263205/1-788 Len: 796 Check: 5088 Weight: 1.00 Name: ENSBTAP00000029374/1-711 Len: 796 Check: 9683 Weight: 1.00 Name: bmy_14698T0/1-688 Len: 796 Check: 1692 Weight: 1.00 Name: BACU017116/1-725 Len: 796 Check: 283 Weight: 1.00 // 1 50 ENSTTRP00000004436/1-776 MDVSGQETDW RSAAFRQKLV SQIEDAMRKA GVAHSKSSKD MESHVFLKAK ENSP00000263205/1-788 MDVSGQETDW RSTAFRQKLV SQIEDAMRKA GVAHSKSSKD MESHVFLKAK ENSBTAP00000029374/1-711 MDVSGQETDW RSPTFRQKLV SQIEDAMRKA GVAHSKSSKD MESHVFLKAK bmy_14698T0/1-688 ---------- ---------- ---------- ---------- ---------M BACU017116/1-725 ---------- -------MCF VSREDAMRKA GVAHSKSSKD MESHVFLKAK 51 100 ENSTTRP00000004436/1-776 TRDEYLSLVA RLIIHFRDIH NKKSQASVSD PMNALQSLTG GPAAGAAGIG ENSP00000263205/1-788 TRDEYLSLVA RLIIHFRDIH NKKSQASVSD PMNALQSLTG GPAAGAAGIG ENSBTAP00000029374/1-711 TRDEYLSLVA RLIIHFRDIH NKKSQASVSD PMNALQSLTG GPTAGAAGLG bmy_14698T0/1-688 AHGAWPGLA- -------DTA LRRCTLCPAD PMNALQSLTG GPAAGAAGIG BACU017116/1-725 TRDEYLSLVA RLIIHFRDIH NKKSQASVSD PMNALQSLTG GPAAGAAGIG 101 150 ENSTTRP00000004436/1-776 LPARGPGQPL GGMGGLGAMG QPMPLSGQPP PGTSGMAPHG MAVVSTAAPQ ENSP00000263205/1-788 MPPRGPGQSL GGMGSLGAMG QPMSLSGQPP PGTSGMAPHS MAVVSTATPQ ENSBTAP00000029374/1-711 LPTRGPGQAL GGMGGLGAMG QPMPLSGQPP PGTSGMAPHN MAVVSTAAPQ bmy_14698T0/1-688 LPARGPGQPL GGMGGLGAMG QPMPLSGQPP PGTSGMTPHG MAVVSTAAPQ BACU017116/1-725 LPARGPGQPL GGMGGLGAMG QPMPLSGQPP PGTSGMAPHG MAVVSTAAPQ 151 200 ENSTTRP00000004436/1-776 TQLQLQQVAL --QQQQQQFQ AQQQAAL--- -QQQQQQQFQ VQQSAMQQQF ENSP00000263205/1-788 TQLQLQQVAL QQQQQQQQFQ QQQQAALQQQ QQQQQQQQFQ AQQSAMQQQF ENSBTAP00000029374/1-711 TQLQLQQVAL --QQQQQQFQ AQQQVAL--- QQQQQQQQFQ AQQSAMQQQF bmy_14698T0/1-688 TQLQLQQVAL ----QQQQFQ AQQQAAL--- --QQQQQQFQ VQQSAMQQQF BACU017116/1-725 TQLQLQQVAL --QQQQQQFQ AQQQAAL--- -QQQQQQQFQ VQQSAMQQQF 201 250 ENSTTRP00000004436/1-776 QAVVQQQQL- --QQQQQQQH LIKLHHQNQQ QMQQQQQQQL QRMAQLQL-- ENSP00000263205/1-788 QAVVQQQQQL Q-QQQQQQQH LIKLHHQNQQ QI-QQQQQQL QRIAQLQLQQ ENSBTAP00000029374/1-711 QAAVQQQ--- --QQLQQQQH LIKLHQQNQQ QM---QQQQL QRMAQLQL-- bmy_14698T0/1-688 QAVVQQQQLQ QQQQQQQQQH LIKLHHQNQQ QIQQQQQQQL QRMAQLQL-Q BACU017116/1-725 QAVVQQQQL- --QQQQQQQH LIKLHHQNQQ QMQQQQQQQL QRMAQLQL-- 251 300 ENSTTRP00000004436/1-776 --QQQQQQQQ QQQQALQAQP PIQQPPMQQP QPPPSQALPQ QLQQLHHPQH ENSP00000263205/1-788 QQQQQQQQQQ QQQQALQAQP PIQQPPMQQP QPPPSQALPQ QLQQMHHTQH ENSBTAP00000029374/1-711 -------QQQ QQQQALQAQP PIQQPPLQQP PPPPSQALPQ QLQP---PQH bmy_14698T0/1-688 QQQQQQQQQQ QQQQALQAQP PIQQPPMQQP QPPPSQALPQ QLQQLHHPQH BACU017116/1-725 --QQQQQQQQ QQQQALQAQP PIQQPPMQQP QPPPSQALPQ QLQQLHHPQH 301 350 ENSTTRP00000004436/1-776 HQPPPQP-QP PVAQNQPSQL PPQSQTQPLV SQAPALPGQM LYAQPQLKLV ENSP00000263205/1-788 HQPPPQPQQP PVAQNQPSQL PPQSQTQPLV SQAQALPGQM LYTQPPLKFV ENSBTAP00000029374/1-711 HQAPPQP--- ---------- PPQSQPQPLV SQAPALPGQM LYTQPQLKLV bmy_14698T0/1-688 HQPPPQP-QP PVAQNQPSQL PPQSQTQPLV SQAPALPGQM LYAQPQLKLV BACU017116/1-725 HQPPPQP-QP PVAQNQPSQL PPQSQTQPLV SQAPALPGQM LYAQPQLKLV 351 400 ENSTTRP00000004436/1-776 RAPMVVQQPQ VQPQVPQ--- ---PHTAVPT AQASQIVGPG VQXXXXXXXX ENSP00000263205/1-788 RAPMVVQQPP VQPQVQQ--- ---QQTAVQT AQAAQMVAPG VQMITEALAQ ENSBTAP00000029374/1-711 RAPMVVQQPQ VQPQVP---- ---PQTAVPT AQASQIVGPG V--------- bmy_14698T0/1-688 RAPMVVQQPQ VQPQVPQVQP QVPPQTAVPT AQASQIVGPG V--------- BACU017116/1-725 RAPMVVQQPQ VQPQVPQVQP QVPPQTAVPT AQASQIVGPG V--------- 401 450 ENSTTRP00000004436/1-776 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000263205/1-788 GGMHIRARFP PTTAVSAIPS SSIPLGRQPM AQVSQSSLPM LSSPSPGQQV ENSBTAP00000029374/1-711 ---------- ---------- ---------- -QVSQSSLTV LSSPSPGQQV bmy_14698T0/1-688 ---------- ---------- ---------- -QVSQSGLTM LSSPSPGQQV BACU017116/1-725 ---------- ---------- ---------- -QVSQSGLTM LSSPSPGQQV 451 500 ENSTTRP00000004436/1-776 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000263205/1-788 QTPQSMPPPP QPSPQPGQPS SQPNSNVSSG PAPSPSSFLP SPSPQPSQSP ENSBTAP00000029374/1-711 HTPQSMPPPP QPSPQPGPPS SQPNSNVSSG PAPSPSSFLP SPSPQPSQSP bmy_14698T0/1-688 QTPQSMPPPP QPSPQPGPPS SQPNSNVSSG PAPSPSSFLP SPSPQPSQSP BACU017116/1-725 QTPQSMPPPP QPSPQPGPPS SQPNSNVSSG PALAPSSFLP SPSPQPSQSP 501 550 ENSTTRP00000004436/1-776 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000263205/1-788 VTARTPQNFS VPSPGPLNTP VNPSSVMSPA GSSQAEEQQY LDKLKQLSKY ENSBTAP00000029374/1-711 VTARTPQNFS VPSPGPLNTP VNPSSVMSPA GSSQAEEQQY LDKLKQLSKY bmy_14698T0/1-688 VTARTPQNFS VPSPGPLNTP VNPSSVMSPA GSSQAEEQQY LDKLKQLSKY BACU017116/1-725 VTARTPQNFS VPSPGPLNTP VNPSSVMSPA GSSQAEEQQY LDKLKQLSKY 551 600 ENSTTRP00000004436/1-776 XXXXXXXXXX XXXNEDRKKD LSKMKSLLDI LTDPSKRCPL KTLQKCEIAL ENSP00000263205/1-788 IEPLRRMINK IDKNEDRKKD LSKMKSLLDI LTDPSKRCPL KTLQKCEIAL ENSBTAP00000029374/1-711 IEPLRRMINK IDKNEDRKKD LSKMKSLLDI LTDPSKRCPL KTLQKCEIAL bmy_14698T0/1-688 IEPLRRMINK IDKNEDRKKD LSKMKSLLDI LTDPSKRCPL KTLQKCEIAL BACU017116/1-725 IEPLRRMINK IDKNEDRKKD LSKMKSLLDI LTDPSKRCPL KTLQKCEIAL 601 650 ENSTTRP00000004436/1-776 EKLKNDMAVP TPPPPPVPPT KQQYLCQPLL DAVLANIRSP VFNHSLYRTF ENSP00000263205/1-788 EKLKNDMAVP TPPPPPVPPT KQQYLCQPLL DAVLANIRSP VFNHSLYRTF ENSBTAP00000029374/1-711 EKLKNDMAVP TPPPPPVPPT KQQYLCQPLL DAVLANIRSP VFNHSLYRTF bmy_14698T0/1-688 EKLKNDMAVP TPPPPPVPPT KQQYLCQPLL DAVLANIRSP VFNHSLYRTF BACU017116/1-725 EKLKNDMAVP TPPPPPVPPT QQQTLCQPLL DAVLANIRSP VFNHSLYRTF 651 700 ENSTTRP00000004436/1-776 VPAMTAIHGP PITAPVVCTR KRRFEEDERQ SIPNVLQGEV ARLDPKFLVN ENSP00000263205/1-788 VPAMTAIHGP PITAPVVCTR KRRLEDDERQ SIPSVLQGEV ARLDPKFLVN ENSBTAP00000029374/1-711 VPAMTAIHGP PITAPVVSTR KRKFEEDERQ TIPNVLQGEV ARLDPKFLVN bmy_14698T0/1-688 VPAMTAIHGP PITAPVVCTR KRRFEEDERQ SIPNVLQGEV ARLDPKFLVN BACU017116/1-725 VPAMTAIHGP PITAPVVCTR KRRFEEDERQ SIPNVLQGEV ARLDPKFLVN 701 750 ENSTTRP00000004436/1-776 LDPSHCSNNG TVHLICKLDD KDLPSVPPLE LSVPADYPAQ SPLWIDRQWQ ENSP00000263205/1-788 LDPSHCSNNG TVHLICKLDD KDLPSVPPLE LSVPADYPAQ SPLWIDRQWQ ENSBTAP00000029374/1-711 LDPSHCSSNG AVHLICKLDD KDLPSVPPLE LSVPADYPAQ SPLWINRQWQ bmy_14698T0/1-688 LDPSHCSNNG TVHLICKLDD KDLPSVPPLE LSVPADYPAQ SPLWIDRQWQ BACU017116/1-725 LDPSHCSNNG TVHLICKLDD KDLPSVPPLE LSVPADYPAQ SPLWIDRQWQ 751 800 ENSTTRP00000004436/1-776 YDANPFLQSV HRCMTSRLLQ LPDKHSVTAL LNTWAQSIHQ ACLSAA ENSP00000263205/1-788 YDANPFLQSV HRCMTSRLLQ LPDKHSVTAL LNTWAQSVHQ ACLSAA ENSBTAP00000029374/1-711 YDANPFLQSV HQCMTSRLLQ LPDKHSVTAL LNTWAQSVHQ ACLSAA bmy_14698T0/1-688 YDANPFLQSV HRCMTSRLLQ LPDKHSVTAL LNTWAQSIHQ ACLSAA BACU017116/1-725 YDANPFLQSV HRCMTSRLLQ LPDKHSVTAL LNTWAQSIHQ ACLSAA