KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:17 2014 Check: 00 .. Name: ENSTTRP00000008659/1-1260 Len: 1285 Check: 4418 Weight: 1.00 Name: ENSBTAP00000029392/1-929 Len: 1285 Check: 972 Weight: 1.00 Name: bmy_15266T0/1-929 Len: 1285 Check: 2721 Weight: 1.00 Name: ENSP00000303507/1-1271 Len: 1285 Check: 4890 Weight: 1.00 Name: BACU017163/1-1069 Len: 1285 Check: 5638 Weight: 1.00 // 1 50 ENSTTRP00000008659/1-1260 MVDPVGFAEA WKAQFPDSEP PRMELRSVGD IEQELERCKA SIRRLEQEVN ENSBTAP00000029392/1-929 ---------- ---------- ---------- ---------- ---------- bmy_15266T0/1-929 ---------- ---------- ---------- ---------- ---------- ENSP00000303507/1-1271 MVDPVGFAEA WKAQFPDSEP PRMELRSVGD IEQELERCKA SIRRLEQEVN BACU017163/1-1069 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000008659/1-1260 QERFRMIYLQ TLLAKEKKSY DRQRWGFRRA AQPPDGAAEP R--APRPQPA ENSBTAP00000029392/1-929 ---------- ---------- ---------- ---------- ---------- bmy_15266T0/1-929 ---------- ---------- ---------- ---------- ---------- ENSP00000303507/1-1271 QERFRMIYLQ TLLAKEKKSY DRQRWGFRRA AQAPDGASEP RASASRPQPA BACU017163/1-1069 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000008659/1-1260 PADCADPPPA DEPEARLDGE GSPGKARPTA TRRPGAAAPA DHDDRGPPTS ENSBTAP00000029392/1-929 ---------- ---------- ---------- ---------- ---------- bmy_15266T0/1-929 ---------- ---------- ---------- ---------- ---------- ENSP00000303507/1-1271 PADGADPPPA EEPEARPDGE GSPGKARPGT ARRPGAAASG ERDDRGPPAS BACU017163/1-1069 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000008659/1-1260 VAALRSNFER IRKGPVQPAA TDAEKPFYVN VEFHHERGLV KVNDKDVSDR ENSBTAP00000029392/1-929 ---------- ---------- ---------- ---------- ---------- bmy_15266T0/1-929 ---------- ---------- ---------- ---------- ---------- ENSP00000303507/1-1271 VAALRSNFER IRKGHGQPGA -DAEKPFYVN VEFHHERGLV KVNDKEVSDR BACU017163/1-1069 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000008659/1-1260 ISSLGRQARQ MERKKSQQGA GPAPGDPPRL SYRGRLSESS CGLDGDFEDA ENSBTAP00000029392/1-929 ---------- ---------- ---------- ---------- ---------- bmy_15266T0/1-929 ---------- ---------- -------MSP RLQGQSREPR -GPGGPF--- ENSP00000303507/1-1271 ISSLGSQAMQ MERKKSQHGA GSSVGDASRP PYRGRSSESS CGVDGDYEDA BACU017163/1-1069 --------MQ MERKKSQQGA GPGPGDPPRP SYRGRLSESS CGLDGDFEDV 251 300 ENSTTRP00000008659/1-1260 ELNPRFMKDN LINANGGSRP PWPPLEYQPY QSIYVGGMMV EGEGKGSLQR ENSBTAP00000029392/1-929 ---------- ---------- ---------- ---------- ---------- bmy_15266T0/1-929 ----RFTGSE ALTAEA---- ------FRP- ---------- ---------- ENSP00000303507/1-1271 ELNPRFLKDN LIDANGGSRP PWPPLEYQPY QSIYVGGMM- EGEGKGPLLR BACU017163/1-1069 ELNPRFLKDN LINANGGSRP PWPPLEYQPY QSIYVGGMMV EGEGKGSLQR 301 350 ENSTTRP00000008659/1-1260 SQSTSEQEKR LTWPRRSYSP RSFEDSGGGY TPDCSSNENL TSSEEDFSSG ENSBTAP00000029392/1-929 ---------- ---------- ---------- ---------- -XSEEDFSSG bmy_15266T0/1-929 ---------- --------CP AAVGSSSRGW ---------- -----QVSSR ENSP00000303507/1-1271 SQSTSEQEKR LTWPRRSYSP RSFEDCGGGY TPDCSSNENL TSSEEDFSSG BACU017163/1-1069 SQSTSEQEKR LTWPRRSYSP RSFEDSGGGY TPDCSSNENL TSSEEDFSSG 351 400 ENSTTRP00000008659/1-1260 QSSRVSPSPT TYRTFRDKSR SPSQNSQQSF DSSSPPTPQC QKRHRQGPVV ENSBTAP00000029392/1-929 QSSRVSPSPT TYRPFRDKSR SPSQNSQQSF DSSSPPTPQC QKRHRQGPVV bmy_15266T0/1-929 GCCNLEKEGL VFILFKQANK ---------- -------PVI PRRK------ ENSP00000303507/1-1271 QSSRVSPSPT TYRMFRDKSR SPSQNSQQSF DSSSPPTPQC HKRHRHCPVV BACU017163/1-1069 QSSRVSPSPT TYRMFRDKSR SPSQNSQQSF DSSSPPTPQC QKRHRQGPVV 401 450 ENSTTRP00000008659/1-1260 VSEATIVGVR KTGQIWPSDG ---------D GAFHGDADAP FGTPPGYGCA ENSBTAP00000029392/1-929 VSEATIVGVR KTGQIWPSDG ---------D GALHADADAL FGTPPGFGCA bmy_15266T0/1-929 ---------- -----WKL-- ---------E SDLFGGWDAP FGTPPGYSCA ENSP00000303507/1-1271 VSEATIVGVR KTGQIWPNDG ---------E GAFHGDADGS FGTPPGYGCA BACU017163/1-1069 VSEATIVGVR KTGQIWPSDG DSLSSRLLQD GTFHGDADAP FGTPPGYSCA 451 500 ENSTTRP00000008659/1-1260 TDRAEEQRRH QDGLPYMDDS PSSSPHLGSK GRGSRD---- -APESTKVSE ENSBTAP00000029392/1-929 SDRAEEPRRP QDGLPYIDDS PASSPHLSSK ARGGRD---- -AAEPSRASE bmy_15266T0/1-929 TDRAEEQRRH QDGLPYMDDS PSSSPHLGSK GRGSQD---- -APESTKVSE ENSP00000303507/1-1271 ADRAEEQRRH QDGLPYIDDS PSSSPHLSSK GRGSRDALVS GALESTKASE BACU017163/1-1069 MDRAEEQRRH QDGLPYVDDS PSSSPHLGSK GRGGQD---- -APEPTKVSE 501 550 ENSTTRP00000008659/1-1260 LDLEKGSEMR KWVLSGILAS EETYLSHLEA LLLXXXXXXX XXXXXXXXXX ENSBTAP00000029392/1-929 LDLEKGSEMR KWVLSGILAS EETYLSHLEA LLLPMKPLKA AATTSQPVLT bmy_15266T0/1-929 LDLEKGSEMR KWVLSGILAS EETYLSHLEA LLLPMKPLKA AATTSQPVLT ENSP00000303507/1-1271 LDLEKGLEMR KWVLSGILAS EETYLSHLEA LLLPMKPLKA AATTSQPVLT BACU017163/1-1069 LDLEKGSEMR KWVLSGILAS EETYLSHLEA LLLPMKPLKA AATTSQPVLT 551 600 ENSTTRP00000008659/1-1260 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXASQLG ENSBTAP00000029392/1-929 SQQIETIFFK VPELYEIHKD FYDGLLPRVQ QWSRQQRVGD LFQKLASQLG bmy_15266T0/1-929 SQQIETIFFK VPELYEIHKE FYDGLLPRLX QWSHQQRVGD LFQKLASQLG ENSP00000303507/1-1271 SQQIETIFFK VPELYEIHKE FYDGLFPRVQ QWSHQQRVGD LFQKLASQLG BACU017163/1-1069 SQQIETIFFK VPELYEIHKE FYDGLLPRLQ QWSHQQRVGD LFQKLASQLG 601 650 ENSTTRP00000008659/1-1260 VYRAFVDNYG VAMETAEKCC QANAQFAEIS ENLRARSNKD AKDQTTKNSL ENSBTAP00000029392/1-929 VYRAFVDNYE VAMETAEKCC QANAQFAEIS ENLRARSNKE AKDQTTKNSL bmy_15266T0/1-929 VYRAFVDNYG VAMETAEKCC QANAQFAEIS ENLRARSNKD AKDQTTKNSL ENSP00000303507/1-1271 VYRAFVDNYG VAMEMAEKCC QANAQFAEIS ENLRARSNKD AKDPTTKNSL BACU017163/1-1069 VYRAFVDNYG VAMETAEKCC QANAQFAEIS ENLRARSNKD AKDQTTKNSL 651 700 ENSTTRP00000008659/1-1260 ETLLYKPVDR VTRSTLVLHX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000029392/1-929 ETLLYKPVDR VTRSTLVLHD LLKHTPPSHP DHPLLQDALR ISQNFLSSIN bmy_15266T0/1-929 ETLLYKPVDR VTRSTLVLHD LLKHTPSGHP DHLLLQDALR ISQNFLSSIN ENSP00000303507/1-1271 ETLLYKPVDR VTRSTLVLHD LLKHTPASHP DHPLLQDALR ISQNFLSSIN BACU017163/1-1069 ETLLYKPVDR VTRSTLVLHD LLKHTPSGHP DHLLLQDALR ISQNFLSSIN 701 750 ENSTTRP00000008659/1-1260 XXXXXXXXXX XXXXXXHRQL LKDSFMVELV EGARKLRHVF LFTDLLLCTK ENSBTAP00000029392/1-929 EEITPRRQSM TVKKGEHRQL LKDSFMVELV EGARKLRHVF LFTDLLLCTK bmy_15266T0/1-929 EEITPRRQSM TVKKGEHRQL LKDSFMVELV EGARKLRHVF LFTDLLLCTK ENSP00000303507/1-1271 EEITPRRQSM TVKKGEHRQL LKDSFMVELV EGARKLRHVF LFTDLLLCTK BACU017163/1-1069 EEITPRRQSM TVKKGEHRQL LKDSFMVELV EGARKLRHVF LFTDLLLCTK 751 800 ENSTTRP00000008659/1-1260 LKKQSGGKTQ QYDCKWYIPL TDLSFQTVDD AEATPNIPLV LDEELDAMKI ENSBTAP00000029392/1-929 LKKQSGGKAQ QYDCKWYIPL TDLSFQTVDE SEAAPSIPLV LDEELDAMKV bmy_15266T0/1-929 LKKQSGGKTQ QYDCKWYIPL TDLSFQTVDD SEAAPNIPLV LDEELDAMKI ENSP00000303507/1-1271 LKKQSGGKTQ QYDCKWYIPL TDLSFQMVDE LEAVPNIPLV PDEELDALKI BACU017163/1-1069 LKKQSGGKTQ QYDCKWYIPL TDLSFQTVDD SEAAPNIPLV LDEELDAMKI 801 850 ENSTTRP00000008659/1-1260 KISQIKSDIQ REKRANKGSK AIERLRKKLS EQESLLLLMS PSMAFRVHSR ENSBTAP00000029392/1-929 KISQIKSDIQ REKRANKGSK AIERLRKKLS EQESLLLLMS PNMAFRVHSR bmy_15266T0/1-929 KISQIKSDIQ REKRANKGSK AIERLRKKLS EQESLLLLMS PSMAFRVHSR ENSP00000303507/1-1271 KISQIKNDIQ REKRANKGSK ATERLKKKLS EQESLLLLMS PSMAFRVHSR BACU017163/1-1069 KISQIKSDIQ REKRANKGSK AIERLRKKLS EQESLLLLMS PSMAFRVHSR 851 900 ENSTTRP00000008659/1-1260 NGKSYTFLIS SDYERAEWRE NIREQQKKCF KSFSLTSVEL QMLTNSCVKL ENSBTAP00000029392/1-929 NGKSYTFLIS SDYERAEWRE NIREQQKKCF KSFSLTSVEL QMLTNSCVKL bmy_15266T0/1-929 NGKSYTFLIS SDYERAEWRE NIREQQKKCF KSFSLTSVEL QMLTNSCVKL ENSP00000303507/1-1271 NGKSYTFLIS SDYERAEWRE NIREQQKKCF RSFSLTSVEL QMLTNSCVKL BACU017163/1-1069 NGKSYTFLIS SDYERAEWRE NIREQQKKCF KSFSLTSVEL QMLTNSCVKL 901 950 ENSTTRP00000008659/1-1260 QTVHSIPLTI NKEDDESPGL YGFLNVIVHS ATGFKQSSSL YCTLEVDSFG ENSBTAP00000029392/1-929 QTVHSIPLTI NKEDDESPGL YGFLNVIVHS ASGFKQSSSL YCTLEVDSFG bmy_15266T0/1-929 QTVHSIPLTI NKEDDESPGL YGFLNVIVHS ATGFKQSSSL YCTLEVDSFG ENSP00000303507/1-1271 QTVHSIPLTI NKEDDESPGL YGFLNVIVHS ATGFKQSSNL YCTLEVDSFG BACU017163/1-1069 QTVHSIPLTI NKEDDESPGL YGFLNVIVHS ATGFKQSSSL YCTLEVDSFG 951 1000 ENSTTRP00000008659/1-1260 YFV-KAKTRV YRDTGEPNWN EEFEIEPEGS QTLRIL-YEK CYNKSKITKE ENSBTAP00000029392/1-929 YFVNKAKTRV YRDTAEPNWN EEFEIELEGS QTLRILCYEK CYHKTRLAKE bmy_15266T0/1-929 YFVNKAKTRV YRDTAEPNWN EEFEIELEGS QTLRILCYEK CYNKSKITKE ENSP00000303507/1-1271 YFVNKAKTRV YRDTAEPNWN EEFEIELEGS QTLRILCYEK CYNKTKIPKE BACU017163/1-1069 YFVNKAKTRV YRDTAEPNWN EEFEIELEGS QTLRILCYEK CYNKSKITKE 1001 1050 ENSTTRP00000008659/1-1260 D-GESADRIM GKGQVQLDPQ ALQDRDWQRT IIAMNGIEVK LSVKFTSREF ENSBTAP00000029392/1-929 DGGESTDRIV GKGQAQLDPQ TLQDRDWQRT AIAMNGIEVK LSIKFTSREL bmy_15266T0/1-929 D-GESADRIM GKGQVQLDPQ ALQDREWQRT IIAMNGIEVK LSVKFTSREF ENSP00000303507/1-1271 D-GESTDRLM GKGQVQLDPQ ALQDRDWQRT VIAMNGIEVK LSVKFNSREF BACU017163/1-1069 D-GESADRIM GKGQVQLDPQ ALQDREWQRT IIAMNGIEVK LSVKFTSREF 1051 1100 ENSTTRP00000008659/1-1260 SLKRMPSRKQ TGVFGVKIAV VTKRERSKVP YIVRQCVEEI ERRGMEEVGI ENSBTAP00000029392/1-929 SLKRMPSRKQ TGVFGVRIAV VTKRERSKVP YIVRQCVEEI ERRGMEEVGI bmy_15266T0/1-929 SLKRMPSRKQ TGVFGVKIAV VTKRERSKVP YIVRQCVEEI ERRGMEEVGI ENSP00000303507/1-1271 SLKRMPSRKQ TGVFGVKIAV VTKRERSKVP YIVRQCVEEI ERRGMEEVGI BACU017163/1-1069 SLKRMPSRKQ TGVFGVKIAV VTKRERSKVP YIVRQCVEEI ERRGMEEVGI 1101 1150 ENSTTRP00000008659/1-1260 YRVSGVATDI QALKAAFDVN N-DVS-MMSE MDVNAIAGTL KLYFREL-EP ENSBTAP00000029392/1-929 YRVSGVATDI QALKAAFDVN NKDVSVMMSE MDVNAIAGTL KLYFRELPEP bmy_15266T0/1-929 YRVSGVATDI QALKAAFDVN NKDVSVMMSE MDVNAIAGTL KLYFRELPEP ENSP00000303507/1-1271 YRVSGVATDI QALKAAFDVN NKDVSVMMSE MDVNAIAGTL KLYFRELPEP BACU017163/1-1069 YRVSGVATDI QALKAAFDVN DKDVSVMMSE MDVNAIAGTL KLYFRELPEP 1151 1200 ENSTTRP00000008659/1-1260 -FTDEFYPNF AEGIALSDPV AKESCMLNLL LSLPEANLLT FLFLLDHLKR ENSBTAP00000029392/1-929 LFTDEFYPNF AEGIALSDPV AKESCMLNLL LSLPEANLLT FLFLLEHLKR bmy_15266T0/1-929 LFTDEFYPNF AEGIALSDPV AKESCMLNLL LSLPEANLLT FLFLLDHLKR ENSP00000303507/1-1271 LFTDEFYPNF AEGIALSDPV AKESCMLNLL LSLPEANLLT FLFLLDHLKR BACU017163/1-1069 LFTDEFYPNF AEGIALSDPV AKESCMLNLL LSLPEANLLT FLFLLDHLKR 1201 1250 ENSTTRP00000008659/1-1260 VAEKETVNKM SLHNLATVFG PTLLRPSDKE SKLPPNPSQP ISMTDSWSLE ENSBTAP00000029392/1-929 VAEKETVNKM SLHNLATVFG PTLLRPSEKE NKPPANPSQA ISMTDSWSLE bmy_15266T0/1-929 VAEKETVNKM SLHNLATVFG PTLLRPSDKE SKLPANPSQP ISMTDSWSLE ENSP00000303507/1-1271 VAEKEAVNKM SLHNLATVFG PTLLRPSEKE SKLPANPSQP ITMTDSWSLE BACU017163/1-1069 VAEKETVNKM SLHNLATVFG PTLLRPSDKE SKLPANPSQP ISMTDSWSLE 1251 1300 ENSTTRP00000008659/1-1260 VMSQV--QVL LYFLQLEAIP APDSKRQSIL FSTEV ENSBTAP00000029392/1-929 VMSQVFIQFL IFFFP-KKIQ IPTKMLECTL WTSGV bmy_15266T0/1-929 VMSQV--QVL LYFLQLEAIP APDSKRQSIL FSTEV ENSP00000303507/1-1271 VMSQV--QVL LYFLQLEAIP APDSKRQSIL FSTEV BACU017163/1-1069 VMSQV--QVL LYFLQLEAIP APDSKRQSIL FSTEV