KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:39:18 2014 Check: 00 .. Name: ENSBTAP00000029400/1-1119 Len: 1206 Check: 8422 Weight: 1.00 Name: BACU017162/1-1204 Len: 1206 Check: 8250 Weight: 1.00 Name: ENSTTRP00000013919/1-1066 Len: 1206 Check: 4150 Weight: 1.00 Name: bmy_15265T0/1-705 Len: 1206 Check: 836 Weight: 1.00 // 1 50 ENSBTAP00000029400/1-1119 MKKASRSVGS APKVSGTSRV QAADKARPES SSSASAGSRP VKPGAAAALS BACU017162/1-1204 MKKTSRSVGS VPKVSGISKV QTADKTKPEN SSSASAGGKL VKPGTAASLS ENSTTRP00000013919/1-1066 ---------- ---------- ---------- ---------- ---------- bmy_15265T0/1-705 MKKTSRSVGS VPKVSGISKS QTADKTKPEN SSSASAGGKL VKPGTAASLS 51 100 ENSBTAP00000029400/1-1119 KTKSSDDLLA GMAGGVTVTN GVKGKKNACS SAAPAAPAPA VSATENRPRT BACU017162/1-1204 KTKSSDDLLA GMAGGVTVTN GVKGKKSTCP TAAPSASAPA MSTMENRPKS ENSTTRP00000013919/1-1066 -TKSSDDLLA GMAGGVTVTN GVKGKKSTCP SAAPSASAPA MSTMENRPKS bmy_15265T0/1-705 KTKSSDDLLA GMAGGVTVTN GVKGKKSTCP SAAPSASAPA MSTMENRPKS 101 150 ENSBTAP00000029400/1-1119 GTGTSSSTKR STCTGNKEPS STRERLRERT RLNQSKKLPS AGQGANDVAS BACU017162/1-1204 STGTSSSTKR STSTGNKESS STRERLRERT RLNQSKKLPS AGQGANDMAL ENSTTRP00000013919/1-1066 STGTSSSTKR STSTGNKESS STRERLRERT RLNQSKKLPS AGQGANDMAL bmy_15265T0/1-705 ---------- --STGNKESS STRERLRERT RLNQSKKLPS AGQGANDMAL 151 200 ENSBTAP00000029400/1-1119 AKRSRSRTAA ECDVRMSKSK SDNQISDKAA LEARVKDLLT LAKTKDVEIL BACU017162/1-1204 AKRSRSRTAT ECDIRMSKSK SDNQISDKAA LEAKVKDLLT LAKTKDMEIL ENSTTRP00000013919/1-1066 AKRSRSRTAT ECDIRMSKSK SDNQISDKAA LEAKVKDLLT LAKTKDVEIL bmy_15265T0/1-705 AKRSRSRTAT ECDIRMSKSK SDNQISDKAA LEAKVKDLLT LAKTKDVEIL 201 250 ENSBTAP00000029400/1-1119 HLRSELRDMR AQLGISEDPL TEGAETSEEK EASTVHQPTD VESTLLQLQE BACU017162/1-1204 HLRNELRDMR AQLGINEDP- PEGDEKS-EK EAIIVHQPTD VESTLLQLQE ENSTTRP00000013919/1-1066 HLRNELRDMR AQLGINEDP- PEGDEKS-EK EAIIVHQPTD VESTLLQLQE bmy_15265T0/1-705 HLRNELRDMR AQLGINEDP- PEGDEKS-EK EAVIVHQPTD VESTLLQLQE 251 300 ENSBTAP00000029400/1-1119 QNAAIREELN QLKNENRMLK DRLNALGFSL EQRLDHSEKL FGYQSLSPEI BACU017162/1-1204 QNTAIREELN QLKNENRMLK DRLNALGFSL EQRLDHSEKL FGYQSLSPEI ENSTTRP00000013919/1-1066 QNTAIREELN QLKNENRMLK DRLNALGFSL EQRLDHSEKL FGYQSLSPEI bmy_15265T0/1-705 QNTAIREELN QLKNENRMLK DRLNALGFSL EQRLDHSEKL FGYQSLSPEI 301 350 ENSBTAP00000029400/1-1119 TPGNQSDGGG TLTSSVEGSA PGSVEDLLSQ DENTLMDHQH SNSLDNLDSE BACU017162/1-1204 TPGNQSDGGG TLTSSVEGSA PGSVEDLLSQ DENTLMDHQH SNSMDNLDSE ENSTTRP00000013919/1-1066 TPGNQSDGGG TLTSSVEGSA PGSVEDLLSQ DENTLMDHQH SNSMDNLDSE bmy_15265T0/1-705 TPGNQSDGGG TLTSSVEGSA PGSVEDLLSQ DENTLMDHQH SNSMDNLDSE 351 400 ENSBTAP00000029400/1-1119 CSEVYQPLTS SDDALDAPSS SESEGLPSVE RSRKGSSGNA SEVSVACLTE BACU017162/1-1204 CSEVYQPLTS SDDALDAPSS SESEGIPSIE HSRKGSSGNA SEVSVACLTE ENSTTRP00000013919/1-1066 CSEVYQPLTS SDDALDAPSS SESEGIPSIE RSRKGSSGNA SEVSVACLTE bmy_15265T0/1-705 CSEVYQPLTS SDDALDAPSS SESEGIPSIE RSRKGSSGNA SEVSVACLTE 401 450 ENSBTAP00000029400/1-1119 RIHQMEENQH STSEELQATL QELADLQQIT QELNSENERL GEEKVILMES BACU017162/1-1204 RIHQMEENQH STSEELQATL QELADLQQIT QELNSENERL GEEKVILMES ENSTTRP00000013919/1-1066 RIHQMEENQH STSEELQATL QELADLQQIT QELNSENERL GEEKVILMES bmy_15265T0/1-705 RIHQMEENQH STSEELQATL QELADLQQIT QELNSENERL GEEKVILMES 451 500 ENSBTAP00000029400/1-1119 LCQQSDKLEH FSRQIEYFRS LLDEHHISYV IDEDVKSGRY MELEQRYMDL BACU017162/1-1204 LCQQSDKLEH FSRQIEYFRS LLDEHHISYV IDEDVKSGRY MELEQRYMDL ENSTTRP00000013919/1-1066 LCQQSDKLEH FSRQIEYFRS LLDEHHISYV IDEDVKSGRY MELEQRYMDL bmy_15265T0/1-705 LCQQSDKLEH FSRQIEYFRS LLDEHHISYV IDEDVKSGRY MELEQRYMDL 501 550 ENSBTAP00000029400/1-1119 AENSRFEREQ LLGVQQHLSN TLKMAEQDNK EAQELIGALK ERSHHMERAV BACU017162/1-1204 AENTRFEREQ LLGVQQHLSN TLKMAEQDNK EAQEMIGALK ERNHHMERIV ENSTTRP00000013919/1-1066 AENTRFEREQ LLGVQQHLSN TLKMAEQDNK EAQEMIGALK ERNHHMERLV bmy_15265T0/1-705 AENTRFEREQ LLGVQQHLSN TLKMAEQDNK EAQEMIGALK ERNHHMERIV 551 600 ENSBTAP00000029400/1-1119 ESEQKGKAAL AATLEELRAT LASDQIEMNR LKAQLENEKQ KVAELYSIHN BACU017162/1-1204 ESEQKGKAAL AATLEEFKAT VASDQIEMNR LKAQLENEKQ KVAELYSIHN ENSTTRP00000013919/1-1066 ESEQKGKAAL AATLEEFKAT VASDQIEMNR LKAQLENEKQ KVAELYSIHN bmy_15265T0/1-705 ESEQKGKAAL AATLEEFKAT VASDQIEMNR LKAQLENEKQ KVAELYSIHN 601 650 ENSBTAP00000029400/1-1119 SGDKSDIQDL LESVRLDKEK AETLASSLQE DLAHTRNDAN RLQDAIAKVE BACU017162/1-1204 SGDKSDIQDL LESVRLDKEK AETLASSLQE DLAHTRNDAN RLQDTIAKVE ENSTTRP00000013919/1-1066 SGDKSDIQDL LESVRLDKEK AETLASSLQE DLAHTRNDAN RLQDAIAKVE bmy_15265T0/1-705 SGDKSDIQDL LESVRLDKEK AETLASSLQE DLAHTRNDAN RLQDTIAKVE 651 700 ENSBTAP00000029400/1-1119 DEYRAFQGEA KKQIEDLNVA VEKLRSELEE RDTERSDMKE TIFELEDEVE BACU017162/1-1204 DEYRAFQEEA KKQIEDLNMT LEKLRSELEE KETERSDMKE TIFELEDEVE ENSTTRP00000013919/1-1066 DEYRAFQEEA KKQIEDLNMT LEKLRSELEE KETERSDMKE TIFELEDEVE bmy_15265T0/1-705 DEYRAFQEEA KKQIEDLNMT LEKLRSELEE KETERSDMKE TIFELEDEVE 701 750 ENSBTAP00000029400/1-1119 QHRAVKLHDN LIISDLENTV KKLQDQKHDM EREIKTLHRR LREESAEWRQ BACU017162/1-1204 QHRAVKLHDN LIISDLENTV KKLQDQKHDM EREIKTLHRR LREESAEWRQ ENSTTRP00000013919/1-1066 QHRAVKLHDN LIISDLENTV KKLQDQKHDM EREIKTLHRR LREESAEWRQ bmy_15265T0/1-705 QHRAVKLHDN LIISDLESK- ---------- ---------- ---------- 751 800 ENSBTAP00000029400/1-1119 FQADLQTAVV IANDIKSEAQ EEIGDLKRRL HEAQEKNEKL TKELEEIKSR BACU017162/1-1204 FQADLQTAVV IANDIKSEAQ EEIGDLKRRL HEAQEKNEKL TKELEEIKSR ENSTTRP00000013919/1-1066 FQADLQTAVV IANDIKSEAQ EEIGDLKRRL HEAQEKNEKL TKELEEIKSR bmy_15265T0/1-705 ---------- ---------- ---------- ---------- ---------- 801 850 ENSBTAP00000029400/1-1119 KQEEERGRVY NYMNAVERDL AALRQGMGLS RRSSTSSEPT PTVKTLIKSF BACU017162/1-1204 KQEEERGRVY NYMNAVERDL AALRQGMGLS RRSSTSSEPT PTVKTLIKSF ENSTTRP00000013919/1-1066 KQEEERGRVY NYMNAVERDL AALRQGMGLS RRSSTSSEPT PTVKTLIKSF bmy_15265T0/1-705 ---------- ---------- ---------- ---------- ---------- 851 900 ENSBTAP00000029400/1-1119 DSASQVPSPA AAAMPRTPLS PSPMKTPPAA AVSPMQRHSI SGPISTSKPL BACU017162/1-1204 DSASQVPSPA TAAIPRTPLS PSPMKTPPAA AVSPMQRHSI SGPISTSKPL ENSTTRP00000013919/1-1066 DSASQVPSPA TAAIPRTPLS PSPMKTPPAA AVSPMQRHSI SGPISTSKPL bmy_15265T0/1-705 ---------- ---------- ---------- ---------- ---------- 901 950 ENSBTAP00000029400/1-1119 TALSDKRPNY GEIPVQEHLL RTSSTSRPAS ---------- ---------- BACU017162/1-1204 TALSDKRPNY GEIPVQGPPA KGTSVDGLKS PFTSVPSSRP GPQMDPGIVC ENSTTRP00000013919/1-1066 TALSDKRPNY GEIPVQEHLL RTSSTSRXXX ---------- ---------- bmy_15265T0/1-705 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSBTAP00000029400/1-1119 -LPRVPAMES AKTLSVSRRS SEEMKRDVSA PEGTSPAALM AMGATSPQLS BACU017162/1-1204 VVTGPAADLL DAVSLLSRRS SEEMKRDVSA PEGASPASLM AMGATSPQLS ENSTTRP00000013919/1-1066 -XXXXXXXXX XXXXXXSRRS SEEMKRDVSA PEGASPASLM AIGATSPQLS bmy_15265T0/1-705 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSBTAP00000029400/1-1119 LSSSPTASVT PTARSRIREE RKDPLSALAR EYGGSKRNAL LKWCQKKTEG BACU017162/1-1204 LSSSPTASVT PTTRSRIREE RKDPLSALAR EYGGSKRNAL LKWCQKKTEG ENSTTRP00000013919/1-1066 LSSSPTASVT PTTRSRIRDE RKDPLSALAR EYGGSKRNAL LKWCQKKTEG bmy_15265T0/1-705 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSBTAP00000029400/1-1119 YQ-------- ---------- ---------- ---------- ---------- BACU017162/1-1204 YQVRGSLGGA VTVSEEVKDS RCASRGALGF AGAHPGCPAD STSQRYLVGV ENSTTRP00000013919/1-1066 YQ-------- ---------- ---------- ---------- ---------- bmy_15265T0/1-705 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSBTAP00000029400/1-1119 ---------- --------NI DITNFSSSWN DGLAFCALLH TYLPAHIPYQ BACU017162/1-1204 ETNPLTDLKA AVPAGGSENI DITNFSSSWN DGLAFCALLH TYLPAHIPYQ ENSTTRP00000013919/1-1066 ---------- --------NI DITNFSSSWN DGLAFCALLH TYLPAHIPYQ bmy_15265T0/1-705 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSBTAP00000029400/1-1119 ELNSQDKRRN FTLAFQAAES VGIKSTLDIN EMVRTERPDW QNVMLYVTAI BACU017162/1-1204 ELNSQDKRRN FTLAFQAAES VGIKSTLDIN EMVGTERPDW QNVMLYVTAI ENSTTRP00000013919/1-1066 ELNSQDKRRN FTLAFQAAES VGIKSTLDIN EMVGTERPDW QNVMLYVTAI bmy_15265T0/1-705 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSBTAP00000029400/1-1119 YKYFET BACU017162/1-1204 YKYFET ENSTTRP00000013919/1-1066 YKYFET bmy_15265T0/1-705 ------