KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:20 2014 Check: 00 .. Name: ENSP00000383301/1-644 Len: 788 Check: 8061 Weight: 1.00 Name: ENSBTAP00000029408/1-634 Len: 788 Check: 9634 Weight: 1.00 Name: ENSTTRP00000004357/1-630 Len: 788 Check: 4950 Weight: 1.00 Name: bmy_02461T0/1-549 Len: 788 Check: 8859 Weight: 1.00 Name: BACU017114/1-715 Len: 788 Check: 1461 Weight: 1.00 // 1 50 ENSP00000383301/1-644 MEIPAPEPEK TALSSQDPAL SLKENLEDIS GWGLPEARSK ESVSFKDVAV ENSBTAP00000029408/1-634 CEL-LPEPQV TAAPQEDPAR PLKEIAEDTL PRGLLEARSE ESVTFKDVAV ENSTTRP00000004357/1-630 ME--APEPRE AAPSSQDPVL PLKEIPEDKL SQGLLEGRSE ELVTFKDVAV bmy_02461T0/1-549 ----MPQAAG ATPG------ PL-------- --GLWAGS-- ---------- BACU017114/1-715 ME--APEPRE AAPSSQDPAL PLKEIPEDKL GQGLLEGRSE ELVTFKDVAV 51 100 ENSP00000383301/1-644 DFTQEEWGQL DSPQRALYRD VMLENYQNLL ALGPPLHKPD VISHLERGEE ENSBTAP00000029408/1-634 DFTQEEWGQL DSPQRALYRD VMLENYQNLL SLGPPVCKPD VISHLERGEE ENSTTRP00000004357/1-630 DFTQEEWGQL DSPQRALYRD VMLENYQNLL ALGPPVCKPD VISHLERGEE bmy_02461T0/1-549 -------GEH STQSHATFS- ---------L CAGPPVCKPD VISHLERGEE BACU017114/1-715 DFSQEEWGQL DSPQRALYRD VMLENYQNLL ALGPPVCKPD VISHLERGEE 101 150 ENSP00000383301/1-644 PWSMQREVPR GPCP------ ---------- ---------E W----ELKAV ENSBTAP00000029408/1-634 PWQAPRDGPA GPDP------ ---------- --------GE W--GAEAEPL ENSTTRP00000004357/1-630 PWWAPRAVPG GAGP------ ---------- -------EPE WEPG------ bmy_02461T0/1-549 PWWAPRAVPG GAGT------ ---------- -------EPE REPGPEVQEL BACU017114/1-715 PWWAPRAVPG GAGPDLSPEP QRRTSACSQK VVSPFLIEPE REPGPEVEEL 151 200 ENSP00000383301/1-644 PSQQQGI--- --------CK EE-------- PAQEPIMERP ---------L ENSBTAP00000029408/1-634 PAAPGCLELE RQEHLHVECS HEGLSVWTQP PRAPPSPPGS ---------L ENSTTRP00000004357/1-630 PSQQLCV--- --------YK EE-------- PSWELIAGGL ---------P bmy_02461T0/1-549 WSQQLCV--- --------YK EE-------- PSWEPIAGGL ARSGLHSPGP BACU017114/1-715 WSQQLCV--- --------YK EE-------- PSWEPIAGGL ARSGLHSPGP 201 250 ENSP00000383301/1-644 GGAQAWGRQA GALQRSQAAP W--APAPAMV WDVPVEEFPL --RCPLFAQQ ENSBTAP00000029408/1-634 QSGLASGFLQ TPASPPAAAP P--APPPPRR PSRPTS---- -------SPP ENSTTRP00000004357/1-630 GWQG-RGALA TALSQCE--- ----PAPGTV WGHVVSEEAL GRRCALLAQP bmy_02461T0/1-549 GDRGAQGGPA TALSRCEAAS ARDGPTEEHR WGHAVSEEAL GRRCALLAQP BACU017114/1-715 GDRGAQGGPA TALSRCEAAS TRDSPTEEHR WGHAVSEEAL GRRCALLAQP 251 300 ENSP00000383301/1-644 RVPEGGPLLD TRKNVQATEG RTKAPARLCA GENASTPSEP EKFPQVRRQR ENSBTAP00000029408/1-634 PLPPHL---- ---------- ---LPAAAAL A-----PSLP PRPPPWLRRR ENSTTRP00000004357/1-630 SLPAE----- ---------- ---EPPDGCV G-----SVQS SRV-----RI bmy_02461T0/1-549 SLPTEG---- ---------- ---ASPDGCV G-----SVQS SRA----KRQ BACU017114/1-715 SLPTEG---- ---------- ---ASPDGCM G-----SVQS SRA----KRQ 301 350 ENSP00000383301/1-644 GAGAGEGEFV CGE------- ---------- -------CGK AFRQSSSLTL ENSBTAP00000029408/1-634 SQGAGSGPFA CGE------- ---------- -------CGK AFPRSAALAL ENSTTRP00000004357/1-630 SPGAGXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02461T0/1-549 SPGTGSGPFA CGE------- ---------- -------CGK AFQRSAALAL BACU017114/1-715 SPGAGSGPFA CGE------- ---------- -------CGK AFQRSAALAL 351 400 ENSP00000383301/1-644 HRRWHSREKA YKCDECGKAF TWSTNLLEHR RIHTGEKPFF CGECGKAFSC ENSBTAP00000029408/1-634 HRRWHAREKA YKCGECGKAF SWSTNLLEHQ RVHTGEKPFL CGQCGKAFSC ENSTTRP00000004357/1-630 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXCGKAFSC bmy_02461T0/1-549 HRRWHAREKA YKCGECGKAF TWSTNLLEHR RVHTGEKPFL CGQCGKAFSC BACU017114/1-715 HQRWHTREKA YKCGECGKAF TWSTNLLEHR RVHTGEKPFT CAEGGKAFCQ 401 450 ENSP00000383301/1-644 HSSLNVHQRI HT-------- ---------- ---------- ---------- ENSBTAP00000029408/1-634 HSSLNVHRRV HT-------- ---------- ---------- ---------- ENSTTRP00000004357/1-630 QSFLNVHRRG HT-------- ---------- ---------- ---------- bmy_02461T0/1-549 HSSLNVHRRV HT-------- ---------- ---------- ---------- BACU017114/1-715 RANLTVHRRT HTGERPYKCG ECGKAFALIT NLVDHQRIHT GEKPFVCDLC 451 500 ENSP00000383301/1-644 ---GERPYKC SACEKAFSCS SLLSMHLRVH TGEKPYRCGE CGKAFNQRTH ENSBTAP00000029408/1-634 ---GERPYKC GQCAKAFSCS SLLGMHRRVH TGERPYRCGE CGKAFNQRTH ENSTTRP00000004357/1-630 ---GERSYKC GC--QAISCS SLLGMH-RVH TGERPYRCGE CGKAFNQRTH bmy_02461T0/1-549 ---GERPYKC GACDKAFSCS SLLGMHLRVH TGERPYRCGE CGKAFNQRTH BACU017114/1-715 VHTGERPYKC GACDKAFSCS SLLGMHLRVH TGERPYRCGE CGKAFNQRTH 501 550 ENSP00000383301/1-644 LTRHHRIHTG EKPYQCGSCG KAFTCHSSLT VHEKIHSGDK PFKCSDCEKA ENSBTAP00000029408/1-634 LTRHHRVHTG EKPYCCAACG RAFACHSSLA AHEKLHSGDK PFRCSDCQKA ENSTTRP00000004357/1-630 LTRHRRIHTG EKPYRCGACG RAFACHSSLT VHEKLHSGDK PFQCGDCQKA bmy_02461T0/1-549 LTRHRRIHTG EKPYRCGACG RAFACHSSLT VHEKLHSGDK PFQCGDCQKA BACU017114/1-715 LTRHRRIHTG EKPYRCGACG RAFACHSSLT VHEKLHSGDK PFQCGDCQKA 551 600 ENSP00000383301/1-644 FNSRSRLTLH QRTHTGEKPF KCADCGKGFS CHAYLLVHRR IHSGEKPFKC ENSBTAP00000029408/1-634 FSSRSRLTLH QRAHTGEKPF QCGQCAKAFS CHAYLVVHQR VHSGEKPFRC ENSTTRP00000004357/1-630 FSSRSRLTLH QRAHTGEKPF KCSQCGKAFS CHSYLVVHQR VHSGEKPFRC bmy_02461T0/1-549 FSSRSRLTLH QRAHTGEKPF KCSQCGKAFS CHSYLVVHQR VHSGEKPFRC BACU017114/1-715 FSSRSRLTLH QRAHTGEKPF KCSQCGKAFS CHSYLVVHQR VHSGEKPFRC 601 650 ENSP00000383301/1-644 NECGKAFSSH AYLIVHRRIH TGEKPFDCSQ CWKAFSCHSS LIVHQRIHTG ENSBTAP00000029408/1-634 DECGKAFSSH SYLIVHQRVH TGEKPFDCSR CWKAFSCHSS LIVHQRVHTG ENSTTRP00000004357/1-630 NECGKAFSSH SYLIVHQRVH TGEKPFDCSR CWKAFSCHSS LIVHQRVHTG bmy_02461T0/1-549 NECGKAFSSH SYLIVHQRVH TGEKPFDCSR CWKAFSCHSS LIVHQRVHTG BACU017114/1-715 NECGKAFSSH SYLIVHQRVH TGEKPFDCSR CWKAFSCHSS LIVHQRVHTG 651 700 ENSP00000383301/1-644 EKPYKCSECG RAFSQNHCLI KHQKIHSGEK SFKCEKCGEM FNWSSHLTEH ENSBTAP00000029408/1-634 ERPYKCSQCG RAFSQNHCLV KHQKTHSAEK AFKCHERGEV FGWSGPLAEH ENSTTRP00000004357/1-630 EKPYKCGQCG RAFSQNHCLI KHQKTHSAEK PFKCHECGEV FGWSGPLAEH bmy_02461T0/1-549 EKPYKCGQCG RAFSQNHCLI KHQKTHSAEK PFKCHECGE- --------ER BACU017114/1-715 EKPYKCGQCG RAFSQNHCLI KHQKTHSAEK PFKCHECGEV FGWSGPLAEH 701 750 ENSP00000383301/1-644 QRLHSEGKPL A-IQFNK-HL LSTYYVPGSL LGAGDAGLRD VDPIDALDVA ENSBTAP00000029408/1-634 RRLHGGEKPF A-VQLDQ-RL LSPYYVPGGL PGAGASGGSS VGPVDARDVA ENSTTRP00000004357/1-630 RRLHSREKPF A-VQFDK-RL LSTYCMPGSL LGTGGSGGSS VGPVDALGVA bmy_02461T0/1-549 RISFFGKKQI SWTRFAHIAL LQSHVVS--- ---------- -------DSA BACU017114/1-715 RRLHSGEKPF A-IQFDK-RL LSTCYMPGSL LGTGGSGGSS VGPVDALDVA 751 800 ENSP00000383301/1-644 KLLCVVPPRA GRNFSLGSKP RN-------- -------- ENSBTAP00000029408/1-634 ELLGVAPPSG SRSFSLGSNP RN-------- -------- ENSTTRP00000004357/1-630 ELLGVVPPLA GRS-SVGSNP RN-------- -------- bmy_02461T0/1-549 AVLEPGPASA ---------- ---------- -------- BACU017114/1-715 ELLGVVPPLA GRSSPWAATP EINSCVRETP TCPPGNTP