KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:39:21 2014 Check: 00 .. Name: bmy_01598T0/1-441 Len: 477 Check: 5528 Weight: 1.00 Name: ENSBTAP00000029446/1-432 Len: 477 Check: 6487 Weight: 1.00 Name: BACU003325/1-456 Len: 477 Check: 2082 Weight: 1.00 Name: ENSTTRP00000001456/1-412 Len: 477 Check: 3906 Weight: 1.00 // 1 50 bmy_01598T0/1-441 GSQLSG---W LRKLACLVRV RCTPHPPTPT PPPRRAGR-- ---EQLTPAA ENSBTAP00000029446/1-432 MGHLGALLFL LGGLGALANI -CEITEVDST LVERLGQRLL PWMDRLSQEQ BACU003325/1-456 MGCLGALLFL LGGLGALAQI -CEITEVDST LVERLGQRLL PWMDRLSPEQ ENSTTRP00000001456/1-412 MGCLGALLFL LGGLGALAQI -CEITEVDST LVERLGQRLL PWMDRLSPEQ 51 100 bmy_01598T0/1-441 AHVTVTAPSP RPGWTLSGAP SGRGTRNNRG GQHAGGEAGP APLALDGPAL ENSBTAP00000029446/1-432 LN-----PSI YVGLRLSSL- --------QA GAKEAHYLHS LKLSYQQSLL BACU003325/1-456 LN-----PSI YVGLRLSSL- --------QA GAKEAHYLHS LKLSYQQSLL ENSTTRP00000001456/1-412 LN-----PSI YVGLRLSSL- --------QA GAKEAHYLHS LKLSYQQSLL 101 150 bmy_01598T0/1-441 PGAAEPHNDN SDSEPKPSMG QLALYLLALR ANCEFVGGRK GGRLVSQLKR ENSBTAP00000029446/1-432 RPAS--NKDD NDSEAKPSMG QLALYLLALR ANCEFIGGRK GDRLVSQLKR BACU003325/1-456 ------SNDN SDSEAKPSMG QLALYLLALR ANCEFVGGRK GGRLVSQLKR ENSTTRP00000001456/1-412 RSAS--SNDN SDSEAKPSMG QLALYLLALR ANCEFVRGRK GDSLVSQLKR 151 200 bmy_01598T0/1-441 FLEDEKGAIG HNHQGHPHTS YYQYGLGILA LCVHQKRVHD SVVGKLLYAV ENSBTAP00000029446/1-432 FLEDEKRAIG HNHQGHPRTS YYQYSLGILA LCVHQKRVHD SVVGKLLYAV BACU003325/1-456 FLEDEKGAIG HNHQGHPHTS YYQYGLGILA LCVHQKRVHD SVVGKLLYAV ENSTTRP00000001456/1-412 FLEDEKGAIG HNHQGHPHTS YYQYGLGILA LCVHQKRVHD SVVGKLLYAV 201 250 bmy_01598T0/1-441 EYKQHLQQGH FPVDTLAMAG LAFSCLELSN LNPNQRNRIT VALGRVQEKI ENSBTAP00000029446/1-432 EHKPHLLQDH VSVDTMAMAG MAFSCLELSN LNPKQRNRIN LALKRVQEKI BACU003325/1-456 EYEQHLQQDH FPVDTLAMAG LAFSCLELSN LNPNQRNRIT VALGRVQEKI ENSTTRP00000001456/1-412 EHTLHLQQGH LPVDTLAMAG LAFSCLKLSN LNRNLRNRST VALGRVQEKI 251 300 bmy_01598T0/1-441 LKAQTPEGHF GNVYSTPLAL QLLMASLRPT VELGTACLKA KAALLASLQH ENSBTAP00000029446/1-432 LKAQTPEGYF GNVYSTPLAL QLLMGSLRPS VELGTACLKA KAALQASLQH BACU003325/1-456 LKAQTPEGHF GNVYSTPLAL QLLMASLRPT VELGTACRKA KAALLASLQH ENSTTRP00000001456/1-412 LKAQTPEGHF GNVYSTPLAL QLLMASLRPT VELGTACLKA KAALLASLQH 301 350 bmy_01598T0/1-441 KAFQNPLMIS QLLPILNQKS YVDLISTDCQ APRVLLEPAT ETPSQTQVPE ENSBTAP00000029446/1-432 KTFQNPLMIS QLLPVLNQKS YVDLISPDCQ APRALLEPAL ETPPQAKVPK BACU003325/1-456 KAFQNPLVIS QLLPILNQKS YVDLISPDCQ APRVLLEPAT ETPSQTQVPE ENSTTRP00000001456/1-412 KAFQNPLMIS QLLPILNQKS YVDLISPDCE APRVLLEPAT ETPSQTQVPE 351 400 bmy_01598T0/1-441 LIHVTLKVSS IFPSYRHSVS VPVGSSLEDV LKKAQEHSRF RYGTQASLSG ENSBTAP00000029446/1-432 FIDVLLKVSG ISPSYRHSVS VPAGSSLEDI LKNAQEHGRF RFRTQASLSG BACU003325/1-456 LIHVTLKVSS IFPSYRHSVS VPVGSSLEDV LKKAQEHSRF RYGTQASLSG ENSTTRP00000001456/1-412 FIHVTLKVSS TFLSYRHSVS VPVSSSLEDV LKKAQEHSRF TYGTQASLSG 401 450 bmy_01598T0/1-441 PYLTSVMGKK AGEREFWQLL RAPDTPLLQG IADY------ ---------- ENSBTAP00000029446/1-432 PFLTSVLGRK AGEREFWQVL RDPDTPLQQG IADY------ ---------- BACU003325/1-456 PYLTSVMGKK AGEREFWQLL RAPNTPLLQA SSERGPSSDS ADFQFNSPGP ENSTTRP00000001456/1-412 PYLTSVMGNK AGEREFWQLL RAPDTPLLQ- ---------- ---------- 451 500 bmy_01598T0/1-441 --------RP KDGEAIELRL VGW---- ENSBTAP00000029446/1-432 --------RP KDGETIELRL VGW---- BACU003325/1-456 LIFLACVPKP GKGSDRHSPL LGPGSCV ENSTTRP00000001456/1-412 ---------- ---------- -------