KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:22 2014 Check: 00 .. Name: bmy_01614T0/1-556 Len: 560 Check: 7783 Weight: 1.00 Name: BACU003338/1-192 Len: 560 Check: 1806 Weight: 1.00 Name: ENSP00000336984/1-307 Len: 560 Check: 9905 Weight: 1.00 Name: ENSTTRP00000001443/1-309 Len: 560 Check: 5825 Weight: 1.00 Name: ENSBTAP00000029451/1-306 Len: 560 Check: 1119 Weight: 1.00 // 1 50 bmy_01614T0/1-556 MATAQLSHSI RIHKAPKEPL VPGYIPNHR- -MKRQEICMD KPSNSKLYLQ BACU003338/1-192 ---------- ---------- ---------- ---------- ---------- ENSP00000336984/1-307 MATAQLSHCI TIHKASKETV FPSQITNEHE SLKMVKKLFA TSISCITYLR ENSTTRP00000001443/1-309 MATAQLSHSI RIHKAPKQTV FPCQITKEHE SLIMVKKLFA TSISCVTYLR ENSBTAP00000029451/1-306 MATVQLSRSI RIRKTSKKTV FPSQITNEHE SLIMVKKLFA TSISCITYLR 51 100 bmy_01614T0/1-556 KQQPDRNLLG WIVITIQKIL LICHENLSLK ILREDKKCPG SLHIIKWIQG BACU003338/1-192 ---------- ---------- ---------- ---------- ---------M ENSP00000336984/1-307 GLFPESSYGE RHL------- ----DDLSLK ILREDKKCPG SLHIIRWIQG ENSTTRP00000001443/1-309 GLFPESSYEE SHL------- ----DDLSLK ILREDKKCPG SLHIIRWIRG ENSBTAP00000029451/1-306 GLFPESSYGE RHL------- ----DDLSLK ILREDKKCPG SLHIIKWIQG 101 150 bmy_01614T0/1-556 CFDALEKRYQ NLGHLHMAVL TLYTNPKEPE IINSCLSKAE ENWCMSRFEG BACU003338/1-192 DFD------- ---------- ---------- ---------- ---------- ENSP00000336984/1-307 CFDALEKRY- ----LRMAVL TLYTDPMGSE KVT------- ---------- ENSTTRP00000001443/1-309 CFDALEKRY- ----LHMAVL TLYTNPKEPE KVT------- ---------- ENSBTAP00000029451/1-306 CFDALEKRY- ----LRMAVL TLYTNPKEPE KVT------- ---------- 151 200 bmy_01614T0/1-556 RFPKIARSIK KLELVEKHGR SGRTGIVYLT RQLYRINAST HQRKRGYCVS BACU003338/1-192 ---------- ---------- ---------- ---------- ---------- ENSP00000336984/1-307 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001443/1-309 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029451/1-306 ---------- ---------- ---------- ---------- ---------- 201 250 bmy_01614T0/1-556 SLSGVNLLLF SILYVIEKYA VFLCGYSSST AFESGTNSED IKKASALLMR BACU003338/1-192 ---------- ---------- ------SSST AFESGTNSED IKKASALLMR ENSP00000336984/1-307 -----EMYQF KFKYTKEGAT MDFDSHSSST SFESGTNNED IKKASVLLIR ENSTTRP00000001443/1-309 -----EIYQF KFKYTKEGAT MDFDSYSSST TFESGTNSED VKKASVLLMR ENSBTAP00000029451/1-306 -----EIYQF KFKYTKEGAT MDFD--SSNT SFESGTNSED IKKASVLLIR 251 300 bmy_01614T0/1-556 KLYILMQNLG PLPNDVILTM KLHYYNAVTP HDYHPPGFKE GVNSHFLLFD BACU003338/1-192 KLYILMQNLG PLPNDVILTM KLHYYNAVTP HDYHPPGFKE GVNSHFLLFD ENSP00000336984/1-307 KLYILMQDLE PLPNNVVLTM KLHYYNAVTP HDYQPLGFKE GVNSHFLLFD ENSTTRP00000001443/1-309 KLYMMMQNLG PLPNDVILTM NLHYYNAVTP HNYHPPGFKE GVNSHFLLFE ENSBTAP00000029451/1-306 KLYMLMQNLG PLPNDVILTM TLHYYNAVTP NDYQPPGFKE GVSSHLLLFE 301 350 bmy_01614T0/1-556 GEPVNVQVGL VSTGFHSMKV KVTTEATRVS DLENNLFQES STTEIAHQGL BACU003338/1-192 GKPVNVQVGL VSTGFHSMKV KVTTEATRVS DLENNLFQES STTEIAHQGL ENSP00000336984/1-307 KEPINVQVGF VSTGFHSMKV KVMTEATKVI DLENNLFREN STTEIAHQGL ENSTTRP00000001443/1-309 GNPVNLQAGL VSTGFHSMKL KVTTEATRVS DLEDRVFQES STTEIAHQGL ENSBTAP00000029451/1-306 GEPVNLQVGM VSTGFHSMKV KVTTEATRVS DLESSLFQES GTTEIAHQGL 351 400 bmy_01614T0/1-556 DCD--EEEEE CNNHVRQSCS DPPLLQLNPV DIFQFIHRSY HSYFLSQSQK BACU003338/1-192 DCD--EEEEE CNNHVRQSCS DPPLLQLNPV DIFQFIHRSY HS-------- ENSP00000336984/1-307 DCD---EEEE CNDHIQ---- -----RMN-- ----FVCSQQ SS-------- ENSTTRP00000001443/1-309 DCDEEEEEEE CNNHIQ---- -----RMN-- ----FVYSQQ SS-------- ENSBTAP00000029451/1-306 DCD--EEEEE CNTEIQ---- -----KMN-- ----FVCSQQ SS-------- 401 450 bmy_01614T0/1-556 DKYKRFLPVV EIIQYLYSSF SEYNCYPLLT MKRGMKVECQ TRSIRTLLET BACU003338/1-192 ---------- ---------- ---------- ---------- ---------- ENSP00000336984/1-307 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001443/1-309 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029451/1-306 ---------- ---------- ---------- ---------- ---------- 451 500 bmy_01614T0/1-556 MKRDHGLCDC SHQEILAKRN ILYPNQEENM WSPDGEDNWR QWEESPPPSD BACU003338/1-192 ---------- ---------- ---------- -------NRI QWSV------ ENSP00000336984/1-307 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001443/1-309 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029451/1-306 ---------- ---------- ---------- ---------- ---------- 501 550 bmy_01614T0/1-556 MRPGMTLQIG RLLGHNPPLP HQARPDPALV KQFEEDDINQ QTYVKFSTSN BACU003338/1-192 ---------- ------PGVK TETKLAPNLE SLF------- ---------- ENSP00000336984/1-307 ---------- -------ECS RKKRKVSEPV KVF------- ---------- ENSTTRP00000001443/1-309 ---------- -------GSS RKKRKVSQPV -VF------- ---------- ENSBTAP00000029451/1-306 ---------- -------ERS RKKRKVSEPV KVF------- ---------- 551 600 bmy_01614T0/1-556 NIIISLPLTN BACU003338/1-192 ---------- ENSP00000336984/1-307 -----IPNRK ENSTTRP00000001443/1-309 -----IPDRK ENSBTAP00000029451/1-306 -----IPDRK