KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:22 2014 Check: 00 .. Name: ENSP00000364204/1-581 Len: 589 Check: 5297 Weight: 1.00 Name: ENSBTAP00000029455/1-588 Len: 589 Check: 2394 Weight: 1.00 Name: ENSTTRP00000010694/1-579 Len: 589 Check: 8760 Weight: 1.00 Name: bmy_19171T0/1-576 Len: 589 Check: 3593 Weight: 1.00 Name: BACU005739/1-492 Len: 589 Check: 7898 Weight: 1.00 // 1 50 ENSP00000364204/1-581 MAVRQALGRG LQLGRALLLR FTGKPGRAYG LG---RPGPA AGCVRGERPG ENSBTAP00000029455/1-588 MAVRQALGRG LQLGRALLLR FTAKPGPAYG WGRPERPGPA AGWGRGERPG ENSTTRP00000010694/1-579 MAVRQALG-G LQLGRALLXX XXXXXXXXXX XX---XXXXX XXXXXXXXXX bmy_19171T0/1-576 MAVRQALGRG LQLGRALLLR FTAKPGPTYG WGRPERPGPA AGWGRGERPG BACU005739/1-492 MAVRQALGRG LQLGRALLLR FTAKPGPTYG WGRPERPGPA A--------- 51 100 ENSP00000364204/1-581 WAAGPGAEPR RVGLGLPNRL RFFRQSVAGL AARLQRQFVV RAWGCAGPCG ENSBTAP00000029455/1-588 PAAGPGTEPC RLGLGLPGRY RFFRQSVAGL AERLQRQFVV RARGGAGPCG ENSTTRP00000010694/1-579 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_19171T0/1-576 QAAGPGAEPR RLGLGLPGRY RFFRQSVAGL AARLQRQFVG WPRGGAGPCG BACU005739/1-492 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000364204/1-581 RAVFLAFGLG LGLIEEKQAE SRRAVSACQE IQAIFTQKSK PGPDPLDTRR ENSBTAP00000029455/1-588 RAVFLAFGLG LGLIEEKQAE GRRAASACEE IQAIFTQKNK LLPDPLDTRR ENSTTRP00000010694/1-579 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXAVFTQKNK LLPDPLDARR bmy_19171T0/1-576 RAVFLAFGLG LGLIEEKQAE GRRAASACDE IQAVFTQKNK LLPDPLDARR BACU005739/1-492 ---------- ---------- ---------- --AVFTQKNK LLPDPLDARR 151 200 ENSP00000364204/1-581 LQGFRLEEYL IGQSIGKGCS AAVYEATMPT LPQNLEVTKS TG-LLPGRGP ENSBTAP00000029455/1-588 WQGFRLEEYL IGQSIGKGCS AAVYEAAMPV LPQSLEEAES LGQLLPGKGP ENSTTRP00000010694/1-579 WQGFRLEEYL IGKSIGKGCS AAVYEATMPV LPQNQQVAGS IG-LLPGRGP bmy_19171T0/1-576 WQGFRLEEYL IGKSIGKGCS AAVYEATMPV LPQDQQVAGS IE-LLPGRGP BACU005739/1-492 WQGFRLEEYL IGKSIGKGCS AAVYEATMPV LPQDQQVAGS IG-LLPGRGP 201 250 ENSP00000364204/1-581 GTSAPGEGQE RAPGAPAFPL AIKMMWNISA GSSSEAILNT MSQELVPASR ENSBTAP00000029455/1-588 EILPRGE-EA PAPRAPAFPL AIKMMWNISA GSSSEAIFST MSQELVPASR ENSTTRP00000010694/1-579 EIIPRGE-EE QAPLAPAFPL AIKMMWNISA GSSSEAIFST MSQELVPASR bmy_19171T0/1-576 EIVPQGE-EE QAPLAPAFPL AIKMMWNISA GSSSEAIFST MSQELVPASR BACU005739/1-492 EMVPRGE-EE QAPLAPAFPL AIKMMWNISA GSSSEAIFST MSRELVPASR 251 300 ENSP00000364204/1-581 VALAGEYGAV TYRKSKRGPK QLAPHPNIIR VLRAFTSSVP LLPGALVDYP ENSBTAP00000029455/1-588 VALAGEYGAV TDRRPKGGPK QLAPHPNIIR VLRAFTSSVP LLPGALVDYP ENSTTRP00000010694/1-579 VALAGEYGAV AHRRSKGGPK QLAAHPNVIR VFRAFTSSVP LLPGALLDYP bmy_19171T0/1-576 VALAGE---- ---RSKGGPK QLAAHPNVIR VFRAFTSSVP LLPGALLDYP BACU005739/1-492 VALAGEYGAV THRRSKGGPK QLAAHPNVIR VFRAFTSSVP LLPGALLDYP 301 350 ENSP00000364204/1-581 DVLPSRLHPE GLGHGRTLFL VMKNYPCTLR QYLCVNTPSP RLAAMMLLQL ENSBTAP00000029455/1-588 DVLPPRLHPA GLGHGRTLFL VMKNYPCTLR QYLRGNTPSP RLATVMTLQL ENSTTRP00000010694/1-579 DVLPPRLHPE GLGHGRTLFL VMKNYSCTLR QYLHGNSPSP RLATVMTLQL bmy_19171T0/1-576 DVLPPRLHPE GLGHGRTLFL VMKNYSCTLR QYLRGNSPSP RLATVMTLQL BACU005739/1-492 DVLPPRLHPE GLGHGRTLFL VMKNYSCTLR QYLRGHSPSP RLATVMTLQL 351 400 ENSP00000364204/1-581 LEGVDHLVQQ GIAHRDLKSD NILVELDPDG CPWLVIADFG CCLADESIGL ENSBTAP00000029455/1-588 LEGVDHLVQQ GVAHRDLKSD NILVELDADG CPWLVITDFG CCLADERVGL ENSTTRP00000010694/1-579 LEGVAHLVQQ GVAHRDLKSD NVLVEPDADG CPWLVITDFG CCLADERVGL bmy_19171T0/1-576 LEGVAHLVQQ GVAHRDLKSD NVLVELDADG CPWLVITDFG CCLADERVGL BACU005739/1-492 LEGVAHLVQQ GVAHRDLKSD NVLVELDADG CPWLVITDFG CCLADERVGL 401 450 ENSP00000364204/1-581 QLPFSSWYVD RGGNGCLMAP EVSTARPGPR AVIDYSKADA WAVGAIAYEI ENSBTAP00000029455/1-588 QLPFTSWYVD RGGNGCLMAP EVSTACPGPR AVIDYSKADA WAVGALAYEI ENSTTRP00000010694/1-579 QLPFTSWYVD RGGNGCLMAP EVSTACPGPR AVIDYSKADA WAVGALAYEI bmy_19171T0/1-576 RLPFTSWYVD RGGNGCLMAP EVSTACPGPR AVIDYSKADA WAVGALAYEI BACU005739/1-492 RLPFTSWCAD RGGNGCLMAP EVSTACPGPR AVIDYSKADA WAVGALAYEI 451 500 ENSP00000364204/1-581 FGLVNPFYGQ GKAHLESRSY QEAQLPALPE SVPPDVRQLV RALLQREASK ENSBTAP00000029455/1-588 FGLPNPFYGQ GRAHLESRSY QEAQLPALPE WVPRDVRCLV RLLLQREVCK ENSTTRP00000010694/1-579 FGLPNPFYGQ GRARLESRSY QEAQLPALPE SVPPEARQLV RSLLQRDASK bmy_19171T0/1-576 FGLPNPFYGQ GRAHLESRSY QEAQLPALPE SVPLETRQLV RSLLQRDASK BACU005739/1-492 FGLPNPFYGQ GRAHLESRSY QEAQLPALPE SVPLEARQLV RSLLQRDASK 501 550 ENSP00000364204/1-581 RPSARVAANV LHLSLWGEHI LALKNLKLDK MVGWLLQQSA ATLLANRLTE ENSBTAP00000029455/1-588 RPSARVAANV LHLSLWGEHT LAPKNLKLDK MIAWLLQQSA ATLLANRLTE ENSTTRP00000010694/1-579 RPSARVAANL LHLSLWGERT LALKDLKPDK MIGWLLQQSA ATLLANRLAE bmy_19171T0/1-576 RPSARVAANV LHLSLWGERT LALKNLKPDR MIGWLLQQSA ATLLASRLAE BACU005739/1-492 RPSARVAANV LHLSLWGERT LALKNLKPDR MIGWLLQQSA ATLLASRLAE 551 600 ENSP00000364204/1-581 KCCVETKMKM LFLANLECET LCQAALLLCS WRAAL---- ENSBTAP00000029455/1-588 KNCVETKMKM LFLANLEYEA LSQAALLLDS WRAAPRQLL ENSTTRP00000010694/1-579 KNCVETRMKM LFLANLEYEA LSQAALLLCS WRAAL---- bmy_19171T0/1-576 KNCVETKMKM LFLANLEYEA LSQAALLLCS WRAAP---- BACU005739/1-492 KNCVETKMKM LFLANLEYEA LSQAALLLCS WRAAP----