KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:23 2014 Check: 00 .. Name: ENSTTRP00000011257/1-431 Len: 492 Check: 1221 Weight: 1.00 Name: ENSP00000331242/1-492 Len: 492 Check: 2692 Weight: 1.00 Name: ENSBTAP00000029478/1-429 Len: 492 Check: 5697 Weight: 1.00 Name: bmy_01630T0/1-341 Len: 492 Check: 9896 Weight: 1.00 Name: BACU003354/1-453 Len: 492 Check: 2569 Weight: 1.00 // 1 50 ENSTTRP00000011257/1-431 ---------- ---------- ---------- ---CFTANGA DYRGTQNWTA ENSP00000331242/1-492 MAPPAARLAL LSAAALTLAA RPAPSPGLGP GPECFTANGA DYRGTQNWTA ENSBTAP00000029478/1-429 ---------- ---------- ---------F FLECFTANGA DYRGTQNWTA bmy_01630T0/1-341 ---------- ---------- ---------- ---------- ---------- BACU003354/1-453 -----MVFVL RSSYHGDDLQ AFMQQQVLQK TVECFTANGA DYRGTQNWTA 51 100 ENSTTRP00000011257/1-431 LQGGKPCLFW NETFQHPYNT LKYPNGEGGL GEHNYCRNPD GDVSPWCYVA ENSP00000331242/1-492 LQGGKPCLFW NETFQHPYNT LKYPNGEGGL GEHNYCRNPD GDVSPWCYVA ENSBTAP00000029478/1-429 LQGGKPCLFW NETFQHPYNT LKYPNGEGGV GEHNYCRNPD GDVSPWCYVA bmy_01630T0/1-341 ---------- ---------- ---------- ---------- ---------- BACU003354/1-453 LQGGKPCLFW NETFQHPYNT LKYPNGEGGL GEHNYCRNPD GDVSPWCYVA 101 150 ENSTTRP00000011257/1-431 EHEDGVYWKY CEIPACQMPG NLGCYKDHGN PPPLTGASKT SNRLTIQTCI ENSP00000331242/1-492 EHEDGVYWKY CEIPACQMPG NLGCYKDHGN PPPLTGTSKT SNKLTIQTCI ENSBTAP00000029478/1-429 EHEDGVYWKY CEIPTCQMPG NLGCYKDHGN PPPLTGTSKT SNKLTIQNCI bmy_01630T0/1-341 ---------- -------VPG NLGCYKDHGN PPPLTGASKT SNRLTIQTCI BACU003354/1-453 EHEDGVYWKY CEIPACQMPG NLGCYKDHGN PPPLTGASKT SNRLTIQTCI 151 200 ENSTTRP00000011257/1-431 SFCRSQRFKF AGMESGYACF CGNSPDYWKY GEAASTECNS VCFGDHTQPC ENSP00000331242/1-492 SFCRSQRFKF AGMESGYACF CGNNPDYWKY GEAASTECNS VCFGDHTQPC ENSBTAP00000029478/1-429 SFCRSQRFKF AGIESGYACF CGNDPDYWKY GEAASTECSS VCFGDHTQPC bmy_01630T0/1-341 SFCRSQRFKF AGMESGYACF CGNSPDYWKY GEAASTECNS VCFGDHTQPC BACU003354/1-453 SFCRSQRFKF AGMESGYACF CGNSPDYWKY GEAASTECNS VCFGDHTQPC 201 250 ENSTTRP00000011257/1-431 GGDGRIIVFD XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000331242/1-492 GGDGRIILFD TLVGACGGNY SAMSSVVYSP DFPDTYATGR VCYWTIRVPG ENSBTAP00000029478/1-429 GGDGRVIVFD TLVGACGGNY SAMTSVVYSP DFPDAYAAGR VCYWTIRVPG bmy_01630T0/1-341 GGDGRIIVFD TLVGACGGNY SAMTSVVYSP DFPDAYATGR VCYWTIRVPG BACU003354/1-453 GGDGRIIVFD TLVGACGGNY SAMTSVVYSP DFPDAYATGR VCYWTIRVPG 251 300 ENSTTRP00000011257/1-431 XXXXXXXXXX XXXXXXXXXX XLLDGYTHRV V--FNGRNR- HLSFNISLDF ENSP00000331242/1-492 ASHIHFSFPL FDIRDSADMV ELLDGYTHRV LARFHGRSRP PLSFNVSLDF ENSBTAP00000029478/1-429 AAHIQFNFTL FDIRDSADMV ELLDGYTHRV LVRFNGRNRP PSSFNISLDF bmy_01630T0/1-341 ASHIYFNFAL FDIRDSADMV ELLDGYTHRV LVRFNGRNRP PSSFNISLDF BACU003354/1-453 ASHIYFNFAL FDIRDSADMV ELLDGYTHRV LVRFNGRNRP PSSFNISLDF 301 350 ENSTTRP00000011257/1-431 VI--YFSDRV SQAQGFAVY- -AVKEDPPQE RPTANQTLAE VFTEQANLSV ENSP00000331242/1-492 VILYFFSDRI NQAQGFAVLY QAVKEELPQE RPAVNQTVAE VITEQANLSV ENSBTAP00000029478/1-429 IILYFFSDRI NQAQGFAVLY QAIKEDPPQE KPTDNQMLAE VITEQANFSV bmy_01630T0/1-341 VILYFFSDRI NQAQGFAVLY QAVKEDPPQE RPTANQTLAE VITEQANLSV BACU003354/1-453 VILYFFSDRI NQAQGFAVLY QAVKEDPPQE RPTANQTLAE VITEQANLSV 351 400 ENSTTRP00000011257/1-431 SAARSSKVLY VITTSPSHPP QTMPGSSSQT PSKG-GSHRV GGWTVYGLAT ENSP00000331242/1-492 SAARSSKVLY VITTSPSHPP QTVPGSNSWA PPMGAGSHRV EGWTVYGLAT ENSBTAP00000029478/1-429 SAARSSKVLY VITTSPSHPR QTVPG----- ---------- --WTVYGLAT bmy_01630T0/1-341 SAARSSKVLY VITTSPSHPP QTVPG----- ---------- --WTVYGLAT BACU003354/1-453 SAARSSKVLY VITTSPSHPP QTVPG----- ---------- --WTVYGLAT 401 450 ENSTTRP00000011257/1-431 LLILTVTAVI AKMLLHITFK SHRVPALGDL RDCRQPGTSG EIWSIFYKPS ENSP00000331242/1-492 LLILTVTAIV AKILLHVTFK SHRVPASGDL RDCHQPGTSG EIWSIFYKPS ENSBTAP00000029478/1-429 LLILTVTAIV AKILLHITFR SHRVPASGDL RDCHQPGTSG EIWSIFYEPS bmy_01630T0/1-341 LLILTVTAII AKILLHITFK SHRVPALGDL RDCHQPGTSG EIWSIFYKPS BACU003354/1-453 LLILTVTAII AKILLHITFK SHRVPALGDL RDCRQPGTSG EIWSIFYKPS 451 500 ENSTTRP00000011257/1-431 TSISIFKKKL KGQSQQDDRN PL-------- ---------- -- ENSP00000331242/1-492 TSISIFKKKL KGQSQQDDRN PLAIQDSEVT SLIWSQGQPR SI ENSBTAP00000029478/1-429 TSISIFKKKL KCQSQPDDRN PLVSD----- ---------- -- bmy_01630T0/1-341 TSISIFKKKL KGQSQQDDRN PLVSD----- ---------- -- BACU003354/1-453 TSISIFKKKL KGQSQQDDRN PLVSD----- ---------- --