KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:23 2014 Check: 00 .. Name: BACU003344/1-319 Len: 319 Check: 9562 Weight: 1.00 Name: ENSP00000216121/1-284 Len: 319 Check: 4533 Weight: 1.00 Name: ENSBTAP00000029502/1-284 Len: 319 Check: 4338 Weight: 1.00 Name: bmy_01621T0/1-209 Len: 319 Check: 8705 Weight: 1.00 Name: ENSTTRP00000000514/1-284 Len: 319 Check: 127 Weight: 1.00 // 1 50 BACU003344/1-319 MSYEGRFHEG IFEKGGREKK KWVSSLQRGE DEQVQEKEMS QTQCFYSKDN ENSP00000216121/1-284 --MAPRL--- -CSISVTARR -----LLGGP GPRAGDVASA AAARFYSKDN ENSBTAP00000029502/1-284 --MAPRL--- -CSISAAARR -----LLGGP GSGPRDVVAV AAARFYSKDN bmy_01621T0/1-209 --MAPRL--- -CSISAAARR -----LLGRP GPGGRDVAAV AAARFYSKDN ENSTTRP00000000514/1-284 --MAPRL--- -CSISAAARR -----LLGRP GPGGRDVAAV AAARFYSKDN 51 100 BACU003344/1-319 EGSWFRSLFV HKVDPRKDAH STLLSKKETS NLYKIQFHNV KPECLDAYNS ENSP00000216121/1-284 EGSWFRSLFV HKVDPRKDAH STLLSKKETS NLYKIQFHNV KPEYLDAYNS ENSBTAP00000029502/1-284 EGSWFRSLFV HKVDPRKDAH STLLSKKETS NLYKIQFHNV KPECLDAYNS bmy_01621T0/1-209 EGSWFRSLFV HKVDPRKDAH STLLSKKETS NLYKIQFHNV KPECLDAYNS ENSTTRP00000000514/1-284 EGSWFRSLFV HKVDPRKDAH STLLSKKETS NLYKIQFHNV KPEYLDAYNS 101 150 BACU003344/1-319 LTEAVLPKLH LDEDYPCSLV GNWNTWYGEQ DQAVHLWRFS GGYPALMDCM ENSP00000216121/1-284 LTEAVLPKLH LDEDYPCSLV GNWNTWYGEQ DQAVHLWRFS GGYPALMDCM ENSBTAP00000029502/1-284 LTEAVLPKLH LDEDYPCSLV GNWNTWYGEQ DQAVHLWRFS GGYPALMDCM bmy_01621T0/1-209 LTEAVLPKLH LDEDYPCSLV GNWNTWYGEQ DQAVHLWRFS GGYPALMDCM ENSTTRP00000000514/1-284 LTEAVLPKLH LDEDYPCSLV GNWNTWYGEQ DQAVHLWRFS GGYPALMDCM 151 200 BACU003344/1-319 NKLKNNKEYL EFRKERSQML LSRRNQLLLE FSFWNEPQPR AGPNIYELRT ENSP00000216121/1-284 NKLKNNKEYL EFRRERSQML LSRRNQLLLE FSFWNEPQPR MGPNIYELRT ENSBTAP00000029502/1-284 NKLKNNKEYL EIRKERSQML LSRRNQLLLE FSFWNEPQPR AGPNIYELRT bmy_01621T0/1-209 NKLKNNK--- ---------- ---------- ---------- ---------- ENSTTRP00000000514/1-284 NKLKNNKEYL EFRKERSQML LSRRNQLLLE FSFWNEPQPR DGPNIYELRT 201 250 BACU003344/1-319 YKLKVPPPPG PRLSPTLPAA ALLSWYPEPG TMIEWGNNWA RAIKYRQENQ ENSP00000216121/1-284 YKLK------ ---------- --------PG TMIEWGNNWA RAIKYRQENQ ENSBTAP00000029502/1-284 YKLK------ ---------- --------PG TMIEWGNNWA RAIKYRQENQ bmy_01621T0/1-209 ---------- ---------- --------PG TMIEWGNNWA RAIKYRQENQ ENSTTRP00000000514/1-284 YKLK------ ---------- --------PG TMIEWGNNWA RAIKYRQENQ 251 300 BACU003344/1-319 EAVGGFFSQI GELYVVHHLW AYKDLQSREE TRNAAWRKRG WDENVYYTVP ENSP00000216121/1-284 EAVGGFFSQI GELYVVHHLW AYKDLQSREE TRNAAWRKRG WDENVYYTVP ENSBTAP00000029502/1-284 EAVGGFFSQI GELYVVHHLW AYKDLQSREE TRNAAWRKRG WDENVYYTVP bmy_01621T0/1-209 EAVGGFFSQI GELYVVHHLW ---------- ---------- --------VP ENSTTRP00000000514/1-284 EAVGGFFSQI GELYVVHHLW XXXXXXXXXX XXXXXXXXXX XXXXXXXXVP 301 350 BACU003344/1-319 LVRHMESRIM IPLKISPLQ ENSP00000216121/1-284 LVRHMESRIM IPLKISPLQ ENSBTAP00000029502/1-284 LVRHMESRIM IPLKISPLQ bmy_01621T0/1-209 LVRHMESRIM IPLKISPLQ ENSTTRP00000000514/1-284 LVRHMESRIM IPLKISPLQ