KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:24 2014 Check: 00 .. Name: ENSP00000311997/1-1020 Len: 1208 Check: 1225 Weight: 1.00 Name: BACU003347/1-549 Len: 1208 Check: 1564 Weight: 1.00 Name: ENSBTAP00000029508/1-1082 Len: 1208 Check: 2420 Weight: 1.00 Name: bmy_01623T0/1-908 Len: 1208 Check: 1329 Weight: 1.00 Name: ENSTTRP00000000505/1-968 Len: 1208 Check: 6171 Weight: 1.00 // 1 50 ENSP00000311997/1-1020 ---------- ---------- ---------- ---------- ---------- BACU003347/1-549 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029508/1-1082 ---------- ---------- ---------- ---------- ---------- bmy_01623T0/1-908 SRPRAAAGGG GEGGALLPRS PPQQLLRGWT PPCCYKRAGR PGATAVPPAP ENSTTRP00000000505/1-968 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000311997/1-1020 ---------- ------MMSF GGADALLGAP FAPLHGGGSL HYALARKGGA BACU003347/1-549 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029508/1-1082 ---------- ------TMSF SGADALLGA- FAPLHGGGSL HYALARKGGA bmy_01623T0/1-908 SRPRVPAPPA AAPAPAKMSF SGAEALLGA- FAPLHGGGSL HYGLARKGGA ENSTTRP00000000505/1-968 ---------- ------KMSF SGAEALLGA- FAPLHGGGSL HYGLTRKGGA 101 150 ENSP00000311997/1-1020 GGTRSAAGSS SGFHSWTRTS VSSVSASPSR FRGAGAASST DSLDTLSNGP BACU003347/1-549 ---------- ---------- ---------- ---MGAAS-- ---------- ENSBTAP00000029508/1-1082 GGARSAAGSS SGFHSWARTS VSSVSASPSR FRGAGTTSST DSLDTLSNGP bmy_01623T0/1-908 GGARSAAGSS SGFHSWARTS VSSVSASPSR FRGAGAASST DSLDTLSNGP ENSTTRP00000000505/1-968 ---RSAAGSS SGFHSWARTS VSSVSASPSR FREAGAASST DSLDTLSNGP 151 200 ENSP00000311997/1-1020 EGCMVAVATS RSEKEQLQAL NDRFAGYIDK VRQLEAHNRS LEGEAAALRQ BACU003347/1-549 ---------- ---------- -------IDL LQLLESEK-- ---------- ENSBTAP00000029508/1-1082 EGCVVV---A RSEKEQLQVL NDRFAGYIDK VRQLEAHNRS LEGEAAALRQ bmy_01623T0/1-908 EGCVVVAAAA RSEKEQLQAL NDRFAGYIDK VRQLEAHNRS LEGEAEALRQ ENSTTRP00000000505/1-968 EGCVVAAAAA RSEKEQLQAL NDRFAGYIDK VRQLEAHNRS LEGEAAALRQ 201 250 ENSP00000311997/1-1020 QQAGRSAMGE LYEREVREMR GAVLRLGAAR GQLRLEQEHL LEDIAHVRQR BACU003347/1-549 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029508/1-1082 QQAGRAAMGE LYEREVREMR GAVLRLGAAR GQLRLEQEHL LEDIAHVRQR bmy_01623T0/1-908 QQAGRAAMGE LYEREVREMR GAVLHLGAAR GQLRLEQEHL LEDIAHVRQR ENSTTRP00000000505/1-968 QQAGRAAMGE LYEREVREMR GAVLRLGAAR GQLRLEQEHL LEDIAHVRQR 251 300 ENSP00000311997/1-1020 LDDEARQREE AEAAARALAR FAQEAEAARV DLQKKAQALQ EECGYLRRHH BACU003347/1-549 ---------- ---------- ---------- DLKDAEEYKE EECGYLRRHH ENSBTAP00000029508/1-1082 LDDEARQREE AEAATRALAR FAQEAEAARV ELQKKAQALQ EECGYLRRHH bmy_01623T0/1-908 LDDEARQREE AEAAARALAR FAQEAAAARV ELQKKAQALQ EECGYLRRHH ENSTTRP00000000505/1-968 LDDEARQREE AEAAARALAR FAQEAEAARV ELQKKAQALQ EECGYLRRHH 301 350 ENSP00000311997/1-1020 QEEVGELLGQ IQGSGAAQAQ MQAETRDALK CDVTSALREI RAQLEGHAVQ BACU003347/1-549 QQEVGELLGQ IQGSSAAQTQ AQAEARDALK CDVTSALREI RAQLEGHAVQ ENSBTAP00000029508/1-1082 QEEVGELLGQ IQSSSAAQT- -QAEARDALK CDVTSALREI RAQLEGHTVQ bmy_01623T0/1-908 QQEVGELLGQ IQGSSAAQTQ AQAEARDALK CDVTSALREI RAQLEGHAVQ ENSTTRP00000000505/1-968 QQEVGELLGQ IQGSSAAQTQ AQAEARDALK CDVTSALREI RAQLEGHAVQ 351 400 ENSP00000311997/1-1020 STLQSEEWFR VRLDRLSEAA KVNTDAMRSA QEEITEYRRQ LQARTTELEA BACU003347/1-549 STLQSEEWFR VRLDRLSEAA KVNTDAMRLA QEEITEYRRQ LQARTTELEA ENSBTAP00000029508/1-1082 STLQSEEWFR VRLDRLSEAA KVNTDAMRSA QEEISEYRRQ LQARTTELET bmy_01623T0/1-908 STLQSEEWFR VRLDRLSEAA K--------- ---------- ---------- ENSTTRP00000000505/1-968 STLQSEEWFR ----RLSEAA KVNTDAMRLA QEEITEYRRQ LQARTTELEA 401 450 ENSP00000311997/1-1020 LKSTKDSLER QRSELEDRHQ ADIASYQEAI QQLDAELRNT KWEMAAQLRE BACU003347/1-549 LKSTKDSLER QRSELEDRHQ ADIASYQEAI QQLDAELRNT KWEMAAQLRE ENSBTAP00000029508/1-1082 LKSTKDSLER QRSELEDRHQ ADIASYQEAI QQLDAELRNT KWEMAAQLRE bmy_01623T0/1-908 ---------- ---------- -------EAI QQLDAELRNT KWEMAAQLRE ENSTTRP00000000505/1-968 LKSTKDSLER QRSELEDRHQ ADIASYQEAI QQLDAELRNT KWEMAAQLRE 451 500 ENSP00000311997/1-1020 YQDLLNVKMA LDIEIAAYRK LLEGEECRIG FGPIPFSLPE GLPKIPSVST BACU003347/1-549 YQDLLNVKMA LDIEIAAYRK LLEGEECRIG FGPSPFSLLE GLPKIPTIST ENSBTAP00000029508/1-1082 YQDLLNVKMA LDIEIAAYRK LLEGEECRIG FGPSPFLLPE GLPKIPSVST bmy_01623T0/1-908 YQDLLNVKMA LDIEIAAYRK LLEGEECRIG FGPSPFSLLE GLPKIPAVST ENSTTRP00000000505/1-968 YQDLLNVKMA LDIEIAAYRK LLEGEECRIG FGPSPFSLLE GLPKIPAIST 501 550 ENSP00000311997/1-1020 HIKVKSEEKI KVVEKSEKET VIVEEQTEET QVTEEVTEEE EKEAKEEEGK BACU003347/1-549 HIKVKSEEKI KVVEKLEKET VIVQEQTEEV QLTEEVTEEE EKEAKEEE-- ENSBTAP00000029508/1-1082 HIKVKSEEKI KMVEKSEKET VIVEEQTEEV QVTEEVTEEE EKEAKEEE-- bmy_01623T0/1-908 HIKVKSEEKI KVVEKLEKET VIVQEQTEEV QLTEEVTEEE QKEAKEEE-- ENSTTRP00000000505/1-968 HIKVKSEEKI KVVEKSEKET VIVQEQTEEV QLTEEVTEEE EKEAKEEE-- 551 600 ENSP00000311997/1-1020 EEEGGEEEEA EGGEEETKSP PAEEAASPEK -EAKSPVKEE AKSPAEAKSP BACU003347/1-549 ---------- EGGEEAAKSP PAEEAASPEK EEAKSPVKEE GKSPEKAESP ENSBTAP00000029508/1-1082 ---------- ---GEAVKSP PAEEAASPEK EEAKSPA--E AKSPEKAKSP bmy_01623T0/1-908 ---------- EGGEEAAKSP PAEEAASPEK EEAKSPMKEE GKSPEKAESP ENSTTRP00000000505/1-968 ---------- EGGEEAAKSP PAEEAASPEK EEAKSPVKEE GKSPEKAESP 601 650 ENSP00000311997/1-1020 EKEEAKS--- -----PAEVK SPEKAKSPAK EEAKSPPEAK SPEKEEAKSP BACU003347/1-549 VKEEAKS--- -----PAEAK SPEKAKSP-- -GVKSPEKAK SPVKEEAKSP ENSBTAP00000029508/1-1082 VKEEAKSPQK EEAKSPAEVK SPEKAKSP-- VEAKSPEKAK SPVKEEAKSP bmy_01623T0/1-908 MKEEAKS--- -----PA--- ---------- ---------- -----EAKSP ENSTTRP00000000505/1-968 VKEEAKS--- -----PAEAK SPEKAKSP-- EGVKSPEKAK SPEKEEAKSP 651 700 ENSP00000311997/1-1020 AEVKSPE--- ---KAKSPAK EEAKSPAEAK SPEKAKSPVK EEAKSPAEAK BACU003347/1-549 EKAKSPV--- ---------K EEAKSPEK-- ----AKSP-- ---------- ENSBTAP00000029508/1-1082 EKAKSPVEAK SPEKAKSPMK EEAKSPEKVK SPVEAKSPEK EEAKSPEKAK bmy_01623T0/1-908 EKAKSPV--- ---------K EEAKSPEK-- ----AKSP-- ---------- ENSTTRP00000000505/1-968 EKAKSPV--- ---------K EEAKSPEK-- ----AKSPEK EEAKSPEKAK 701 750 ENSP00000311997/1-1020 SPVK------ ---------- ---------- ------EEAK SPAEVKSPEK BACU003347/1-549 ---------- ---------- ---------- ---------- --VEAKSPEK ENSBTAP00000029508/1-1082 SPEKAKSPVK EEAKSPEKAK SPVEAKSPVK EEAKSPEKAK SPVEAKSPEK bmy_01623T0/1-908 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000505/1-968 SPEK------ ---------- ---------- ---------- --EEAKSPEK 751 800 ENSP00000311997/1-1020 AKSPTKEEAK SPEKAKSPEK EEAKSPEKAK SPVKAEAKSP EKAKSPVKAE BACU003347/1-549 AKSP--EKAK SPVEVKSP-- EKAKSPEKAK SPVKEEAKSP GKAKSPV--E ENSBTAP00000029508/1-1082 AKSPVKEEAK SPEKAKSPVK EEAKSPEKAK SPVKEEAKSP EKAKSPVKEE bmy_01623T0/1-908 ------EEAK SPEKAKSPVK EDAKSPEKAK SPV--EVKSP EKAKSPVKEE ENSTTRP00000000505/1-968 AKSPEKEEAK SPEKAKSPEK EEAKSPEKAK SPVKEEAKSP EKAKSPVKEE 801 850 ENSP00000311997/1-1020 AKSPEKAKSP VKEEAKSPEK AKSPVKEEAK SPEKAKSPVK EEAKTPEKAK BACU003347/1-549 VKSPEKAKSP VKEEAKSPEK AKSPVKEE-- ----AKSPE- -KAKSPEKAK ENSBTAP00000029508/1-1082 AKSPEKAKSP VKEEAKSPEK AKSPVKEEAK SPEKAKSPV- -EAKSPEKAK bmy_01623T0/1-908 AKSPEKAKSP VKEEAKSPEK AKSPVKEE-- ----AKSPA- -EVKSPEKAK ENSTTRP00000000505/1-968 AKSPEKAKSP EKEEAKSPEK AKSPVKEEAK SPEKAKSPV- -EVKSPEKAK 851 900 ENSP00000311997/1-1020 SPVKEEAKSP EKAKSPEKAK TLDVKSPEAK TPAKEEARSP ADKFPEKAKS BACU003347/1-549 SPVKEEAKSP EKAKS----- ---------- -PVKEEAKS- ----PAEVKS ENSBTAP00000029508/1-1082 SPAKEEAKSP EKAKS----- ---------- -PVKEEAKS- ----PEKAKS bmy_01623T0/1-908 SPMKEEAKSP EKAKS----- ---------- -PVKEEAKS- ----LEKVKS ENSTTRP00000000505/1-968 SPEKEEAKSP EKAKS----- ---------- -PVKEEAKS- ----PEKAKS 901 950 ENSP00000311997/1-1020 PVKEEVKSPE KAKSPLKEDA KAPE------ ---------- ---------- BACU003347/1-549 P--------- ---------- ---------- ---------- ---------- ENSBTAP00000029508/1-1082 PVKEEAKSPE KAKSPAKEEA KSPEKAKSPE KPKSPVKEEA KSPEKPKSPV bmy_01623T0/1-908 PVKEEAKAPE ---------- ---------- ---------- ---------- ENSTTRP00000000505/1-968 PVKEEAKSPE KAKSPVKEEA KSPEKVKSPV ---------- ---------- 951 1000 ENSP00000311997/1-1020 ---------- ---------- ---------- ------KEIP KKEEVKSPVK BACU003347/1-549 ---------- ---------- ---------- ---------- --KKAKSPVK ENSBTAP00000029508/1-1082 KEEAKSPEKP KSPVKEEAKS PEKAKSPVKD EAKAPGKEVP KKEEAKSPVK bmy_01623T0/1-908 ---------- ---------- ---------- ------KEVP KKEEAKSPMK ENSTTRP00000000505/1-968 ---------- ---------- ---------- ------KEVP KKEEAKSPMK 1001 1050 ENSP00000311997/1-1020 EEEKPQEVKV KEPPKKAEEE KAPATPKTEE KKDSKKEEAP KKEAPKPKVE BACU003347/1-549 EEAKSPE-KA KSPKRPNPQR R--------- ---------- ----PNPQLK ENSBTAP00000029508/1-1082 EEEKPQEVRA KEPPKKAEEE KAPAIPKAEE KKDSKKDEVP KKEAPKPE-- bmy_01623T0/1-908 EEEKPQEVKV KEPPKKTEEE KAPATLKTEE KKDSKKDEVP KKEAPKPEVQ ENSTTRP00000000505/1-968 EEEKAQEVKA KEPPKKTEEE KAPATLKTEE KKDSKKDEVP KKEAPKPEVQ 1051 1100 ENSP00000311997/1-1020 EKKEPAVEKP KESKVEAKKE EAEDKKKVPT PEKEAPAKVE VKEDAKPKEK BACU003347/1-549 KRPSPQLR-- ---------- ---------- ---------- ---------- ENSBTAP00000029508/1-1082 EKKEPAVEKP KEPKAEAKKE EAEDKKKATT PEKEAPAK-- GKEEAKPKEK bmy_01623T0/1-908 EKKDPAVEKP KEPKAEAKKE EAEDKKKATT PEKEAAAK-- GKEEAKPKEK ENSTTRP00000000505/1-968 EKKDPAVEKP KEPKAEAKKE EAEDKKKAIT PEKEAAAK-- GKEEAKPKEK 1101 1150 ENSP00000311997/1-1020 TEVAKKEPDD AKAKEPSKPA E--------- KKEAAPEKKD TKEEK---AK BACU003347/1-549 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029508/1-1082 TEVAKKEPDD AKPKEPSKAA E----KPKKE ETPAAPEKKD AKEGKAAEAK bmy_01623T0/1-908 TEVAKKEPDD AKAKEPSKAA EKEPEKPKKE ETPAAPEKKD AKEGKATEAK ENSTTRP00000000505/1-968 TEVAKKEPDD AKAKEPSKAA E------KKE ETPAAPEKKD AKEGKATEAK 1151 1200 ENSP00000311997/1-1020 KPEEKPKTEA KAKEDDKTLS KEPSKPKAEK AEKSSSTDQK DSKPPEKATE BACU003347/1-549 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029508/1-1082 KPEEKPKTEA QAK-EPGKEA STPGKA---K AEKSSSTDQK DSRPAEKAAE bmy_01623T0/1-908 KPEEKPKAEA QAKEEPSKEA STPGKAKAEK AEKSSSTDQK DSRPPEKATE ENSTTRP00000000505/1-968 KPEEKPKAEA QAK-EPIKEA STPGKAKAEK AEKSSSTDQK DSRPPEKATE 1201 1250 ENSP00000311997/1-1020 DKAAKGK- BACU003347/1-549 -------- ENSBTAP00000029508/1-1082 DKATKGEK bmy_01623T0/1-908 DKATKGEK ENSTTRP00000000505/1-968 DKATKGEK