KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:25 2014 Check: 00 .. Name: ENSP00000323858/1-882 Len: 916 Check: 9311 Weight: 1.00 Name: ENSTTRP00000015813/1-881 Len: 916 Check: 1594 Weight: 1.00 Name: ENSBTAP00000029524/1-877 Len: 916 Check: 2943 Weight: 1.00 Name: bmy_13621T0/1-738 Len: 916 Check: 5789 Weight: 1.00 Name: BACU003440/1-907 Len: 916 Check: 9223 Weight: 1.00 // 1 50 ENSP00000323858/1-882 MAADKGPAAG PRSRAAMAQW RKKKGLRKRR GAASQARGSD SEDGEFEIQA ENSTTRP00000015813/1-881 MAGGTRPAAA PRSRAAMAQW RKKKGLRKRR GAASQSRSSD SEDGEFEIQA ENSBTAP00000029524/1-877 MAAGTRPAAA PRSRATMAQW KKKKGLRKRR GAASQSHSSD SEDGEFEVQA bmy_13621T0/1-738 ---------- ---------- ---------- ---------- ---------- BACU003440/1-907 MAAGTRPAAA PRSRAAMAQW RKKKGLRKRR GAASQSRNSD SEDGEFEIQA 51 100 ENSP00000323858/1-882 EDDARARKLG PGRPLPTFPT SECTSDVEPD TREMVRAQNK KKKKSGGFQS ENSTTRP00000015813/1-881 EDDARAQKLG PGRPLPTFPT SECTSDVEPD TREMVRAQNK KKKKSGGFQS ENSBTAP00000029524/1-877 EDDARAQKLG PGRPLPTFPT SECTSDVEPD TREMVRAQNK KKKKSGGFQS bmy_13621T0/1-738 ---------- ---------- ---------- ---------- ---------- BACU003440/1-907 EDDARAQKLG PGRPLPTFPT SECTSDMEPD TREMVRAQNK KKKKSGGFQS 101 150 ENSP00000323858/1-882 MGLSYPVFKG IMKKGYKVPT PIQRKTIPVI LDGKDVVAMA RTGSGKTACF ENSTTRP00000015813/1-881 MGLSYPVFKG IMKKGYKVPT PIQRKTIPVI LDGKDVVXXX XXXXXXXXXX ENSBTAP00000029524/1-877 MGLSYPVFKG IMKKGYKVPT PIQRKTIPMI LDGKDVVAMA RTGSGKTACF bmy_13621T0/1-738 ---------- ---------- ---------- --------MA RTGSGKTACF BACU003440/1-907 MGLSYPVFKG IMKKGYKVPT PIQRKTIPVI LDGKDVVAMA RTGSGKTACF 151 200 ENSP00000323858/1-882 LLPMFERLKT HSAQTGARAL ILSPTRELAL QTLKFTKELG KFTGLKTALI ENSTTRP00000015813/1-881 XXXXXXXXXX RSAQTGARAL ILS-TRELAL QTMKFTKELG KFTGLKTALI ENSBTAP00000029524/1-877 LIPMFERLKT HSAQTGARAL ILSPTRELAL QTMKFTKELG KFTGLKTALI bmy_13621T0/1-738 LIPMFERLKT HIAQTGARAL ILSPTRELAL QTMKFTKELG KFTGLKTALI BACU003440/1-907 LIPMFERLKT HIAQTGARAL ILSPTRELAL QTMKFTKELG KFTGLKTALI 201 250 ENSP00000323858/1-882 LGGDRMEDQF AALHENPDII IATPGRLVHV AVEMSLKLQS VEYVVFDEAD ENSTTRP00000015813/1-881 LGGDKMEDQF AALHENPDII IATPGRLVHV AVEMNLKLQS VEYVVFDEAD ENSBTAP00000029524/1-877 LGGDKMEDQF AALHENPDII IATPGRLVHV AVEMNLKLQS VEYVVFDEAD bmy_13621T0/1-738 LGGDKMEDQF SALHENPDII IATPGRLVHV AVEMNLKLQS VEYVVFDEAD BACU003440/1-907 LGGDKMEDQF AALHENPDII IATPGRLVHV AVEMNLKLQS VEYVVFDEAD 251 300 ENSP00000323858/1-882 RLFEMGFAEQ LQEIIARLPG GHQTVLFSAT LPKLLVEFAR AGLTEPVLIR ENSTTRP00000015813/1-881 RLFEMGFAEQ LQEIIARLPG GHQTVLFSAT LPKLLVEFAR AGLMEPVLIR ENSBTAP00000029524/1-877 RLFEMGFAEQ LQEIIGRLPG GHQTVLFSAT LPKLLVEFAR AGLTEPVLIR bmy_13621T0/1-738 RLFEMGFAEQ LQEIIGRLPG GHQTVLFSAT LPKLLVEFAR AGLMEPVLIR BACU003440/1-907 RLFEMGFAEQ LQEIIGRLPG GHQTVLFSAT LPKLLVEFAR AGLMEPVLIR 301 350 ENSP00000323858/1-882 LDVDTKLNEQ LKTSFFLVRE DTKAAVLLHL LHNVVRPQDQ TVVFVATKHH ENSTTRP00000015813/1-881 LDVDSKLNEQ LKTSFFLVRE DAKAAVLLHL LRSLVRPQDQ TVVFVATKHH ENSBTAP00000029524/1-877 LDVDSKLNEQ LKTSFFLVRE DAKAAVLLHL LRNVVRPQDQ TVVFVATKHH bmy_13621T0/1-738 LDVDSKLNEQ LKTSFFLVRE DAKAAVLLHL LRNMVRPQDQ TVVFVATKHH BACU003440/1-907 LDVDSKLNEQ LKTSFFLVRE DAKAAVLLHL LRNVVRPQDQ TVVFVATKHH 351 400 ENSP00000323858/1-882 AEYLTELLTT QRVSCAHIYS ALDPTARKIN LAKFTLGKCS TLIVTDLAAR ENSTTRP00000015813/1-881 AEYLSELLTA QRVSCAHIYS ALDQTARKIN LAKFMHGKCS ALIVTDLAAR ENSBTAP00000029524/1-877 AEYLSELLAT QGVSCAHIYS ALDQTARKIN LARFTHGKCS ALIVTDLAAR bmy_13621T0/1-738 AEYLSELLTT QRVSCAHIYS ALDQTARKIN LAKFMHGKCS ALIVTDLAAR BACU003440/1-907 AEYLSELLTT QRVSCAHIYS ALDQTARKIN LAKFMHGKCS ALIVTDLAAR 401 450 ENSP00000323858/1-882 GLDIPLLDNV INYSFPAKGK LFLHRVGRVA RAGRSGTAYS LVAPDEIPYL ENSTTRP00000015813/1-881 GLDIPLLDNV INYSFPAKGK LFLHRVGRVA RAGRSGTAYS LVAPDEVPYL ENSBTAP00000029524/1-877 GLDIPLLDNV INYSFPAKGK LFLHRVGRVA RAGRSGTAYS LVAPDEVPYL bmy_13621T0/1-738 GLDIPLLDNV INYSFPARGK LFLHRVGRVA RAGRSGTAYS LVAPDEVPYL BACU003440/1-907 GLDIPLLDNV INYSFPARGK LFLHRVGRVA RAGRSGTAYS LVAPDEVPYL 451 500 ENSP00000323858/1-882 LDLHLFLGRS LTLARPLKEP SG-------- -------VAG VDGMLGRVPQ ENSTTRP00000015813/1-881 LDLHLFLGHA LTLARPHEEL SG-------- -------AGG GDGVLGRVPQ ENSBTAP00000029524/1-877 LDLHLFLGRA LTLARPPEEP SG-------- -------TEG GDGVLGRVPQ bmy_13621T0/1-738 LDLHLFLGRA LTLARPHEEP SG-------- -------AGG GDGVLGRVPQ BACU003440/1-907 LDLHLFLGRA LTLARPHEEP SGAXXXXXXX XXXXXXXAGG GDGVLGRVPQ 501 550 ENSP00000323858/1-882 SVVDEEDSGL QSTLEASLEL RGLARVADNA QQQYVRSRPA PSPESIKRAK ENSTTRP00000015813/1-881 GVVDDEDCGL RTSLETSLEL RGLGRVADNA QQQYVRSRPA PSPESIKRAK ENSBTAP00000029524/1-877 GVVDDEDCGL RTSLEASLEL RGLSRVANNA QQQYVRSRPA PSPESIKRAK bmy_13621T0/1-738 GVVDDEDCGL RTSLEASLEL RGLGRVADNA QQQYVRSRPA PSPESIKRAK BACU003440/1-907 GVVDDEDCGL RTSLEASLEL RGLGRVADNA QQQYVRSRPA PSPESIKRAK 551 600 ENSP00000323858/1-882 EMDLVGLGLH PLFSSRFEEE ELQRLRLVDS IKNYRSRATI FEINASSRDL ENSTTRP00000015813/1-881 ELDLSGLGLH PLFSSCFQEE ELQQLRLVDS IRNYRSRATI FEINASSRDL ENSBTAP00000029524/1-877 ELDLAGLGLH PLFSSRFQQE ELQRLRLVDS IRNYRSRATI FEINASSRDL bmy_13621T0/1-738 ELDLSGLGLH PLFSSCFQEE ELQQLRLVDS IRNYRSRATI FEINASSRDL BACU003440/1-907 ELDLSGLGLH PLFSSCFQEE ELQQLRLVDS IRNYRSRATI FEINASSRDL 601 650 ENSP00000323858/1-882 CSQVMRAKRQ KDRKAIARFQ QGQQGR---Q EQQEGPVGPA PSRPALQEKQ ENSTTRP00000015813/1-881 SSQVMRAKRQ KDRKCIASFR QKRQKRQKRQ EQQEGPAIPA PSLPAPQEEQ ENSBTAP00000029524/1-877 SSQVMRAKRE KDRKAIASFQ QGRQER---- --QEGPAGPT PSLPAPQEEQ bmy_13621T0/1-738 SSQVMRAKRQ KDRKSIASFR QERQER---- --QESLAVPA PSLPAPQEEQ BACU003440/1-907 SSQVMRAKRQ KDRKSIASFR QERQER---- --QESLAVPA PSLPAPQEEQ 651 700 ENSP00000323858/1-882 PEKEEEEEAG ESVEDIFSEV VGRKRQRSGP NRGAKRRREE ARQRDQEFYI ENSTTRP00000015813/1-881 PEK--EEAAG DSVEDLFTEV VGRKRQQPGP NRGAKRRREE ARQRDQVFYI ENSBTAP00000029524/1-877 PEK--EEVAG ESVEDVFTEV VGRKRQQPGP QRGAKRRREE ARQRDQAFYI bmy_13621T0/1-738 PEK--EEXAA ESVEDIFTEV VGRKRQQPGP DRGAKRRREE VRQQDQAFFI BACU003440/1-907 PEK--EEEAG ESVEDLFTEV VGRKRQQPGP DRGAKRRREE VRQRDQAFYI 701 750 ENSP00000323858/1-882 PYRPKDFDSE RGLSISGEGG AFEQQAAGAV LDLMGDEAQN LTRGRQQLKW ENSTTRP00000015813/1-881 PYRPKDFDSE RGLSIGGDGG TFEQQVAGAV LDLMGDEGQS LTKGQQQLKW ENSBTAP00000029524/1-877 PYRPKDFDSE RGLSIGGDGG AFEQQVAGAA LDLMGDEAQS LTRGRQQLRW bmy_13621T0/1-738 PYRPKDFDSE RGLSIGGDGG AFEQQVAGAV LDLMGDEAQS LTRGQQQLKW BACU003440/1-907 PYRPKDFDSE RGLSIGGDGG AFEQQVAGAV LDLMGDEAQS LTRGQQQLKW 751 800 ENSP00000323858/1-882 DRKKKRFVGQ SGQEDKKKIK TESGRYISSS YKRDL----- ---------- ENSTTRP00000015813/1-881 DRKKKRFVGQ SGQEDKKKIK TESGRYISSS YKRDL----- ---------- ENSBTAP00000029524/1-877 DRKKKRFVGQ SGQEDKKKIK TESGRYISSS YKRDL----- ---------- bmy_13621T0/1-738 DRKKKRFVGQ SGQEDKKKIK TESGRYISSS YKRDL----- ---------- BACU003440/1-907 DRKKKRFVGQ SGQEDKKKIK TESGRYISSS YKRDLAALPV LRAGSLTQPP 801 850 ENSP00000323858/1-882 -YQKWKQKQK IDDRDSDEEG ASDRRGPERR GGKRDRGQAG ASRPHAPGTP ENSTTRP00000015813/1-881 -YQKWKQKQK IDDRDSEEEG TFERRGPERR GGKRGRGQ-G ASQPRTPGAP ENSBTAP00000029524/1-877 -YQKWKQKQK IDDRDSEEEG TFDRRGPERR GGKRGRGQAG ASQPRTPGTP bmy_13621T0/1-738 -YQKWKQKQK IDDRDSEEEG TFGRRGPERR GGKRGRGQ-G ASQPRTPGAP BACU003440/1-907 SYQKWKQKQK IDDRDSEEEG TFDRRGPERR GGKRGQGQ-G ASQPRTPGAP 851 900 ENSP00000323858/1-882 AGRVRPELKT KQQILKQRRR AQKLHFLQRG GLKQLSARNR RRVQELQQGA ENSTTRP00000015813/1-881 TGRVRSELKT KQQILKQRCR AQKLRFLQRG GLKQLSARNR RRARELQQGA ENSBTAP00000029524/1-877 AGRVLSELKT KQQILKQRRR AQKMRFLQRG GLKQLSARNR RRAQELQQGA bmy_13621T0/1-738 AGRVRSELKT KQQILKQRCR AQKLRFLQRG GLKQLSARNR RRARELQQGA BACU003440/1-907 AGRVCSELKT KQQILKQRCR AQKLRFLQRG GLKQLSARNR RRARELQQGA 901 950 ENSP00000323858/1-882 FGRGARSKKG KMRKRM ENSTTRP00000015813/1-881 FGRGAHSKKG KMRKSL ENSBTAP00000029524/1-877 FGRGAPSKKG KMRKRM bmy_13621T0/1-738 FGRGAHSKKG KMRKSL BACU003440/1-907 FGRGAHSKKG KMRKSL