KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:26 2014 Check: 00 .. Name: ENSP00000448083/1-888 Len: 962 Check: 2541 Weight: 1.00 Name: ENSBTAP00000029529/1-793 Len: 962 Check: 3877 Weight: 1.00 Name: bmy_13618T0/1-853 Len: 962 Check: 4449 Weight: 1.00 Name: BACU003442/1-818 Len: 962 Check: 5847 Weight: 1.00 Name: ENSTTRP00000004338/1-780 Len: 962 Check: 7552 Weight: 1.00 // 1 50 ENSP00000448083/1-888 MESCYIAQAG LELLGSSSSP TLTSQSAEIT EDASNGGVSE QHPWPSGFER ENSBTAP00000029529/1-793 ---------- ---------- ---------- ---------- ---------- bmy_13618T0/1-853 ---------- ---------- ---------- ---------- ---------- BACU003442/1-818 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004338/1-780 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000448083/1-888 ELKPETISSP GYHILRATGE ENMAVSLDDD VPLILTLDEG GSAPLAPSNG ENSBTAP00000029529/1-793 ---------- ---------- ---------- ---------- -----LFSQT bmy_13618T0/1-853 ---------- ---------- --MAVSLDDD VPLILTLDEG GSTPLAPSNG BACU003442/1-818 ---------- ---------- --MAVSLDDD VPLILTLDEG GSTPLVPSNG ENSTTRP00000004338/1-780 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000448083/1-888 LGQEELPSKN GGSYAIHDSQ APSLSSGGES SPSSPA-HNW EMNYQEAAIY ENSBTAP00000029529/1-793 WVVSESPLAD GGKYTVHDSQ APSLSLEGEN SPSSPTEHDW EMNYQEAAIY bmy_13618T0/1-853 LGQEDLPSRN GGKYAVHDSC TPSLSSGGES SPSSLTGHSW EMNYQEAAIY BACU003442/1-818 LGQEDLPSRN GGKYAVHDSC TPSLSSGGES SPSSLTGHNW EMNYQEAAIY ENSTTRP00000004338/1-780 ---------- GGKYAVHDSC TPNLSSGGES SPSSLTGHNW EMNYQEAAIY 151 200 ENSP00000448083/1-888 LQEGENNDKF FTHPKDAKAL AAYLFAHNHL FYLMELATAL LLLLLSLCEA ENSBTAP00000029529/1-793 LQEGENNDKF FTHPKNAKAL AAYLFAHNHL FYLMELSAAL LLLLLSLCEA bmy_13618T0/1-853 LQEGENNDKF FTHPKNAKAL AAYLFAHNHL FYLMELSAAL LLLLLSLCEA BACU003442/1-818 LQEGENNDKF FTHPKNAKAL AAYLFAHNHF FYLMELSAAL LLLLLSLCEA ENSTTRP00000004338/1-780 LQEGENNDKF FTHPKNAKAL AAYLFAHNHL FYLMELSAAL LLLLLSLCEA 201 250 ENSP00000448083/1-888 PAVPALRLGI YVHATLELFA LMVVVFELCM KLRWLGLHTF IRHKRTMVKT ENSBTAP00000029529/1-793 PAVPALRLGI YVHATLELFA LVVVVFELCM KLRWLGLHTF IRHRRTMVKT bmy_13618T0/1-853 PAVPALRLGI YVHATLELFA LMVVVFELCM KLRWLGLHTF IRHRRTMVKT BACU003442/1-818 PAVPALRLGI YVHATLELFA LMVVVFELCM KLRWLGLHTF IRHRRTMVKT ENSTTRP00000004338/1-780 PAVPALRLGI YVHATLELFA LMVVVFELCM KLRWLGLHTF IRHRRTMVKT 251 300 ENSP00000448083/1-888 SVLVVQFVEA IVVLVRQMSH VRVTRALRCI FLVDCRYCGG VRRNLRQIFQ ENSBTAP00000029529/1-793 SVLVVQFVEA IVVLVRQTSH MRVTRALRCI FLVDCRYCGG VRRNLRQMFQ bmy_13618T0/1-853 SVLVVQFVEA IVVLVRQTSH VRVTRALRCI FLVDCRYCGG VRRNLRQIFQ BACU003442/1-818 SVLVVQFVEA IVVLVRQTSH VRVTRALRCI FLVDCRYCGG VRRNLRQIFQ ENSTTRP00000004338/1-780 SVLVVQFVEA IVVLVRQTSH VRVTRALRCI FLVDCRYCGG VRRNLRQIFQ 301 350 ENSP00000448083/1-888 SLPPFMDILL LLLFFMIIFA ILGFYLFSP- ---------- ---------- ENSBTAP00000029529/1-793 SLPPFMDILL LLLFFMIIFA ILGFYLFSP- ---------- ---------- bmy_13618T0/1-853 SLPPFMDILS LLLFFMIIFA ILGEFLLRPR MQALAKSKLT VEKKSHRALL BACU003442/1-818 SLPPFMDILS LLLFFMIIFA ILGFYLFSP- ---------- ---------- ENSTTRP00000004338/1-780 SLPPFMDILS LLLFFMIIFA ILGFYLFSP- ---------- ---------- 351 400 ENSP00000448083/1-888 -NPSDPYFST LENSIVSLFV LLTTANF--- ---------- ---------- ENSBTAP00000029529/1-793 -NPSDPYFST LENSIISLFV LLTTANF--- ---------- ---------- bmy_13618T0/1-853 SSSPPQYFST LENSIVSLFV LLTTAKFLGP REGWEWPGEP RVGEGGGGRE BACU003442/1-818 -NPSDPYFST LENSIVSLFV LLTTANF--- ---------- ---------- ENSTTRP00000004338/1-780 -NPSDPYFST LENSIVSLFV LLTTANF--- ---------- ---------- 401 450 ENSP00000448083/1-888 ---------- ---------- -------PDV MMPSYSRNPW SCVFFIVYLS ENSBTAP00000029529/1-793 ---------- ---------- -------PDV MMPSYSRNPW SCVFFIVYLS bmy_13618T0/1-853 GRRRDVLIED GDQQTRALPV TLCKHSFPDV MMPSYSRNPW SCVFFIVYLS BACU003442/1-818 ---------- ---------- -------PDV MMPSYSRNPW SCVFFIVYLS ENSTTRP00000004338/1-780 ---------- ---------- -------PDV MMPSYSRNPW SCVFFIVYLS 451 500 ENSP00000448083/1-888 IELYFIMNLL LAVVFDTFND IEKRKFKSLL LHKRTAIQHA YRLLISQRRP ENSBTAP00000029529/1-793 IELYFIMNLL LAVVFDTFND IEKRKFKSLL LHKRTAIQHA YRLLVSQRRP bmy_13618T0/1-853 IELYFIMNLL LAVVFDTFND IEKHKFKSLL LHKRTAIQHA YRLLISQRGP BACU003442/1-818 IELYFIMNLL LAVVFDTFND IEKHKFKSLL LHKRTAIQHA YRLLISQRGP ENSTTRP00000004338/1-780 IELYFIMNLL LAVVFDTFND IEKHKFKSLL LHKRTAIQHA YRLLISQRGP 501 550 ENSP00000448083/1-888 AGISYRQFEG LMRFYKPRMS ARERYLTFKA LNQNNTPLLS LKDFYDIYEV ENSBTAP00000029529/1-793 AGISYRQFEG LMRFYKPRMS AGERYLTFKA LNQSNTPLLS LKDFHDIYEV bmy_13618T0/1-853 AGISYRQFEG LMRFYKPRMS AGERYLTFKA LNQSNSPLLS LKDFQDIYEV BACU003442/1-818 AGISYRQFEG LMRFYKPRMS AGERYLTFKA LNQSNSPLLS LKDFQDIYEV ENSTTRP00000004338/1-780 AGISYRQFEG LMRFYKPRMT AGERYLTFKA LNQSNSPLLX XXXXXXXXXX 551 600 ENSP00000448083/1-888 AALKWKAKKN REHWFDELPR TALLIFKGIN ILVKSKAFQY FMYLVVAVNG ENSBTAP00000029529/1-793 AALKWKAKRN REHWFDELPR TAFLIFKGIN ILVKSKAFQY FMYLVVAVNG bmy_13618T0/1-853 AALKWKAKRN REHWFDELPR TAFLIFKGIN ILVKSKAFQY FMYLVVAVNG BACU003442/1-818 AALKWKAKRN REHWFDELPR TALLIFKGIN ILVKSKAFQY FMYLVVAVNG ENSTTRP00000004338/1-780 XXXXXXAKRN REHWFDELPR TAFLIFKGIN ILVKSKAFQY FMYLVVAVNG 601 650 ENSP00000448083/1-888 VWILVETFML KGGNFFSKHV PWSYLVFLTI YGVELFLKVA GLGPVEYLSS ENSBTAP00000029529/1-793 VWILVETFML KGGNFVSRHV PWSHLVFLTI YAVELFLKVA GLGPIEYLSS bmy_13618T0/1-853 VWILVETFML KGGNFFSKHV PWSYLVFLTT GE-----RNE GGAEIESDSI BACU003442/1-818 VWILVETFML KGGNFFSKHV PWSYLVFLTI YGVELFLKVA GLGPVEYLSS ENSTTRP00000004338/1-780 VWILVETFML KGGNFFSKHV PWSYLVFLTI YGVELFLKVA GLGPVEYLSS 651 700 ENSP00000448083/1-888 GWNLFDFSVT VFAFLGLLAL ALNMEPFYFI VVLRPLQLLR LFKLKERYRN ENSBTAP00000029529/1-793 GWNLFDFSVT AFAFLGLLAL AFNMEPFYFI VVLRPLQLLR LFKLKKRYRN bmy_13618T0/1-853 ---------- ---------- -----PSLF- ------QTLW LFKLKKRYRN BACU003442/1-818 GWNLFDFSVT AFAFLGLLAL AFNMEPFYFI VVLRPLQLLR LFKLKKRYRN ENSTTRP00000004338/1-780 GWNLFDFFVT AFAFLGLLAL AFNMEPFYFI VVLRPLQLLR LFKLKKRYRN 701 750 ENSP00000448083/1-888 VLDTMFELLP RMASLGLTLL IFYYSFAIVG MEFFCGIVFP NCCNTSTVAD ENSBTAP00000029529/1-793 VLDTMFELLP RMASLGLTLL IFYYSFAIVG MEFFYGILYP NCCNTSTVAD bmy_13618T0/1-853 VLDTMFELLP RMASLALTLL IFYYSFAIVG MEFFCGILYP NCCNTSTVAD BACU003442/1-818 VLDTMFELLP RMASLGLTLL IFYYSFAIVG MEFFCGILYP NCCNTSTVAD ENSTTRP00000004338/1-780 VLDTMFELLP RMASLGLTLL TFYYSFAIVG MEFFCGILYP NCCNTSTVAD 751 800 ENSP00000448083/1-888 AYRWRNHTVG NRTVVEEGYY YLNNFDNILN SFVTLFELTV VNNWYIIMEG ENSBTAP00000029529/1-793 AYRWLNHSVG NRTVVEEGYY YLNNFDNILN SFVTLFELTV VNNWYIIMEG bmy_13618T0/1-853 AYRWLNHTVD NRTVVEEGYY YLNNFDNILN SFVTLFELTV VNNWYIIMEG BACU003442/1-818 AYRWLNHTVD NRTVVEEGYY YLNNFDNILN SFVTLFELTV VNNWYIIMEG ENSTTRP00000004338/1-780 AYRWLNHTVD NRTVVEEGYY YLNNFDNILN SFVTLFELTV VNNWYIIMEG 801 850 ENSP00000448083/1-888 VTSQTSHWSR LYFMTFYIVT MVVMTIIVAF ILEAFVFRMN YSRKNQDSEV ENSBTAP00000029529/1-793 VTSQTSHWSR LYFMTFYIVT MVVMTIIVAF ILEAFVFRMN YSRKNQDSEV bmy_13618T0/1-853 VTSQTSHWSR LYFMTFYIVT MVVMTIIVAF ILEAFVFRMN YSRKNRDSEV BACU003442/1-818 VTSQTSHWSR LYFMTFYIVT MVVMTIIVAF ILEAFVFRMN YSRKNRDSEV ENSTTRP00000004338/1-780 ITSQTSHWSR LYFMTFYIVT MVVMTIIVAF ILEAFVFRMN YSRKNRDSEV 851 900 ENSP00000448083/1-888 DGGITLEKEI SKEELVAVLE LYREARGASS DVTRLLETLS QMERYQQHSM ENSBTAP00000029529/1-793 DDGITLEKEL SKDELVAVLK LYREAGGANS DIAQLLKILS QLERYEQNTL bmy_13618T0/1-853 DGGITLEKEI SKDELIAVLK LYREAWGASS DIAQLLKILS QMERYEQNTL BACU003442/1-818 DGGITLEKEI SKDELIAVLK LYREAWGAAS DIAQLLKILS QMERYEQNTL ENSTTRP00000004338/1-780 DGGITLEKEI SKDELIAVLK LYQEAWGAAS DIAQLLKILS QMERYEQNTL 901 950 ENSP00000448083/1-888 VFLGRRSRTK SDLSLKMYQE EIQEWYEEHA REQEQ-QRQL SSSAAPAAQQ ENSBTAP00000029529/1-793 VFLGRRSRTK SDLSLKMYQE EIQEWYEEHA RKQEE--RQL SSCVVPATQQ bmy_13618T0/1-853 VFLGRRSRTK SDLSLKMYQE EIQEWYAEHA RKQEEQQRQL SGCVVPTAQQ BACU003442/1-818 VFLGRRSRTK SDLSLKMYQE EIQEWYAEHA RKQEEQQRQL SGCVVPTAQQ ENSTTRP00000004338/1-780 VFLGRRSRTK SDLSLKMYQE EIQEWYEEHA RKQEQQQRQL SGRVVPTTPQ 951 1000 ENSP00000448083/1-888 PPGSRQRSQT VT ENSBTAP00000029529/1-793 PPGSRQRSQT IT bmy_13618T0/1-853 PPGGRQRSQT IT BACU003442/1-818 PPGGRQRSQT IT ENSTTRP00000004338/1-780 PPGSRQRSQT IT