KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:39:27 2014 Check: 00 .. Name: ENSTTRP00000004415/1-561 Len: 593 Check: 2708 Weight: 1.00 Name: ENSP00000447091/1-584 Len: 593 Check: 2865 Weight: 1.00 Name: bmy_13617T0/1-481 Len: 593 Check: 8163 Weight: 1.00 Name: ENSBTAP00000029531/1-584 Len: 593 Check: 5750 Weight: 1.00 // 1 50 ENSTTRP00000004415/1-561 VARGLLNLYW VLSWVCVLLM VETVSGAGGP SAGTRISSQF PASGVNQSPV ENSP00000447091/1-584 MAGRRLNLRW ALSVLCVLLM AETVSGTRGS STGAHISPQF PASGVNQTPV bmy_13617T0/1-481 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000029531/1-584 MAGGLLNVSW VLSLLCVLQM VETVSGARAP SAGAHISSQF PAAGVSQTSV 51 100 ENSTTRP00000004415/1-561 VDCREVCGLN ASSRCDFVRS NPDCRCEGGY LDYLEGIFCH FPPDLLPLAV ENSP00000447091/1-584 VDCRKVCGLN VSDRCDFIRT NPDCHSDGGY LDYLEGIFCH FPPSLLPLAV bmy_13617T0/1-481 --CREVCGLN ASNRCDFVRS NPDCRSEGGY LDYLEGIFCH FPPDLLPLAV ENSBTAP00000029531/1-584 VDCREVCGLN ASDRCAFVRT NPDCRSDGGY LDYLEGIFCH FPARLLPLAI 101 150 ENSTTRP00000004415/1-561 TLY------- -AFWLLYLFL ILGVTAAKFF CPNLSAISTT LKLSHNVA-G ENSP00000447091/1-584 TLY------- -VSWLLYLFL ILGVTAAKFF CPNLSAISTT LKLSHNVA-G bmy_13617T0/1-481 TLYVRPRSGE LAFWLLYLFL ILGVTAAKFF CPNLSAISTT LKLSHNVAGG ENSBTAP00000029531/1-584 TLY------- -AFWLLYLFL ILGVTAAKFF CPNLSAISTT LKLSHNVA-G 151 200 ENSTTRP00000004415/1-561 VTFLAFGNGA PDIFSALVAF SGPRTAGLAF GALFGAGVLV TTVVAGGIAI ENSP00000447091/1-584 VTFLAFGNGA PDIFSALVAF SDPHTAGLAL GALFGAGVLV TTVVAGGITI bmy_13617T0/1-481 VGQQEGAQGR PSL-----AS SPP------- ----GAGVLV TTVVAGGIAI ENSBTAP00000029531/1-584 VTFLAFGNGA PDIFSALVAF SDPRTAGLAF GALFGAGVLV TTVVAGGIAI 201 250 ENSTTRP00000004415/1-561 LHPFTAASRP FLRDIIFYMV AVFLIFTALY CGRVTLAWAL GYLGFYVFYV ENSP00000447091/1-584 LHPFMAASRP FFRDIVFYMV AVFLTFLMLF RGRVTLAWAL GYLGLYVFYV bmy_13617T0/1-481 LHPFTAASRP FLRDVIFYMV AVFLIFTALY RGRVTLAWAL GYLGFYVFYV ENSBTAP00000029531/1-584 LRPFTAASRP FLRDIIFYMA AVLLIFTALY CGRVTLAWAL GYLGFYAFYV 251 300 ENSTTRP00000004415/1-561 VTVVLCTWIY QWQQRRSLVY SVPGTPEVLS GSEEDRVSSN TNSYDYGEEY ENSP00000447091/1-584 VTVILCTWIY QRQRRGSLFC PMPVTPEILS DSEEDRVSSN TNSYDYGDEY bmy_13617T0/1-481 VTVVLCTWIY QWQQRRSLVY SMPGTPEMLS GSEEDRVSSN TNSYDYGEEY ENSBTAP00000029531/1-584 VTVVLCTWIY QRQRRRSLVC SMPATPEILS DSEEERMSSN TNSYDYGEEY 301 350 ENSTTRP00000004415/1-561 RPLFFYQKTT AQILLQALNP LNYRKWRTKP VYWRALKAFK XXXXXXXXXX ENSP00000447091/1-584 RPLFFYQETT AQILVRALNP LDYMKWRRKS AYWKALKVFK LPVEFLLLLT bmy_13617T0/1-481 RPLLFYQETT AQILLQALNP LDYRKWRTKS VYWRVLKVFK LPVEFLLLLT ENSBTAP00000029531/1-584 RPLLLYPETT AQILVQALNP LDYRKWRTKP MYWRVLKVFK LPVEFLLLLT 351 400 ENSTTRP00000004415/1-561 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX YEIG--LSVW ENSP00000447091/1-584 VPVVDPDKDD QNWKRPLNCL HLVISPLVVV LTLQSGTYGV YEIGGLVPVW bmy_13617T0/1-481 VPVMDPDEED GNWKRPLNCL HLVISPLFLV LTLQSGAYGV YEIGGLFPVW ENSBTAP00000029531/1-584 VPVMDPDKED RNWKRPLNCL HLVISPLFLT LTLQSGAYGV YEIGGLFPVW 401 450 ENSTTRP00000004415/1-561 AVVVIAGT-L AAVTFFATSN SEPPRLHWLF AF-GFLTXXX XXXXXXXXXX ENSP00000447091/1-584 VVVVIAGTAL ASVTFFATSD SQPPRLHWLF AFLGFLTSAL WINAAATEVV bmy_13617T0/1-481 AVVVIAGTAL AAVTFFATXN SEPPRLHW-- AFSCFHT--- ---------- ENSBTAP00000029531/1-584 AAVVIAGTAL AAVTFFATSN SEPPRFHWLF AFLGFLTSAL WINAAATEVV 451 500 ENSTTRP00000004415/1-561 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX VFSDLTLARQ GYPRMAFSAC ENSP00000447091/1-584 NILRSLGVVF RLSNTVLGLT LLAWGNSIGD AFSDFTLARQ GYPRMAFSAC bmy_13617T0/1-481 ---------- ---------- ---------D VFSDFTLARQ GYPRMAFSAC ENSBTAP00000029531/1-584 NILRSLGVVF RLSNTVLGLT LLAWGNSIGD VFSDFTLARQ GYPRMAFSAC 501 550 ENSTTRP00000004415/1-561 FGGIIFG--- ---------- ------VKLE PDGLLVWVLA GTLGLSLVCS ENSP00000447091/1-584 FGGIIFNILV GVGLGCLLQI SRSHTEVKLE PDGLLVWVLA GALGLSLVFS bmy_13617T0/1-481 FGGIIFNILV GVGLGCLLQI SRGHVEVELE PDGLLVWVLA GTLGLSLVCS ENSBTAP00000029531/1-584 FGGIIFNMLV GVGLGCLLQI SRSHMEVKLE PDGLLVWILA GTLGLSLVCS 551 600 ENSTTRP00000004415/1-561 LVSVPLQCFQ LSRVYGCCLL LLYLTFLLVA LLTEFGVIHL KTV ENSP00000447091/1-584 LVSVPLQCFQ LSRVYGFCLL LFYLNFLVVA LLTEFGVIHL KSM bmy_13617T0/1-481 LVLVPLQCFQ LNRVYGCCLL LLYLTFLLVA LLTEFGVIHL KTV ENSBTAP00000029531/1-584 LVLVPLQCFQ LSRVYGCCLL LLYLTFLVVA LLTEFGVIHL KTV