KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:31 2014 Check: 00 .. Name: ENSP00000261726/1-1486 Len: 1514 Check: 4007 Weight: 1.00 Name: ENSBTAP00000029613/1-1502 Len: 1514 Check: 320 Weight: 1.00 Name: ENSTTRP00000000892/1-1469 Len: 1514 Check: 5132 Weight: 1.00 Name: bmy_07019T0/1-1369 Len: 1514 Check: 68 Weight: 1.00 Name: BACU013608/1-1265 Len: 1514 Check: 494 Weight: 1.00 // 1 50 ENSP00000261726/1-1486 MAANVGSMFQ YWKRFDLRRL QKELNSVASE LSARQEESEH SHKHLIELRR ENSBTAP00000029613/1-1502 MAANVGSMFQ YWKRFDLRRL QKELNSVASE LSARQEESEH SHKHLIELRR ENSTTRP00000000892/1-1469 ---------- ---------- -KELNSVASE LSARQEESEH SHKHLIELRR bmy_07019T0/1-1369 ---------- ---------- ---------- ---------- ---------- BACU013608/1-1265 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000261726/1-1486 EFKKNVPEEI REMVAPVLKS FQAEVVALSK RSQEAEAAFL SVYKQLIEAP ENSBTAP00000029613/1-1502 EFKKNVPEEI REMVAPVLKS FQAEVVALSK RSQEAEAAFL SVYKQLIEAP ENSTTRP00000000892/1-1469 EFKKNVPEEI REMVAPVLKS FQAEVVALSK RSQEAEAAFL SVYKQLIEAP bmy_07019T0/1-1369 --------ML HQPPAPGGEL LEEEVLDSRS EGRG------ ---------- BACU013608/1-1265 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000261726/1-1486 DPVPVFEAAR SLDDRLQPPS FDPSGQPRRD LHTSWKRNPE LLSPKEQREG ENSBTAP00000029613/1-1502 DPVPVFEVAR SPDDRLQPPS FDPSGPLRRE FHASWKRHPE LVGTKEQREG ENSTTRP00000000892/1-1469 DPVPVFEASR SPDDRLQSPS FDPSGQPRRE LHSSWKRHPE LLGPKEQREG bmy_07019T0/1-1369 NPVPVFEASR SPDDRLQSPS FDPSGQPRRE LHTSWKRHPE LLSPKEQREG BACU013608/1-1265 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000261726/1-1486 TSPAGPTLTE GSRLPGIPGK ALLTETLLQR NEAEKQKGLQ EVQ-ITLAAR ENSBTAP00000029613/1-1502 TSPAGPTLTE ASRLPGIPSK ALLTETLLQR NEAEKQKGLQ EVQ-ITLAAR ENSTTRP00000000892/1-1469 TSPAAPTLTE GSRLPGIPSK ALLTETLLQR NEAEKQKGLQ EVQAFTLAAR bmy_07019T0/1-1369 TSPAGPTLTE GSRLPGIPSK ALLTETLLQR NEAEKQKGLQ EVQAFTLAAR BACU013608/1-1265 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000261726/1-1486 LGEAEEKIKV LHSALKATQA ELLELRRKYD EEAASKADEV GLIMTNLEKA ENSBTAP00000029613/1-1502 LGEAEEKIKV LHSALKATQT ELLELRRKYD EEAASKADEV GLIMTNLEKA ENSTTRP00000000892/1-1469 LGEAEEKIKV LHSXXXXXXX XXXXXXXXXX XXXXXXADEV GLIMTNLEKA bmy_07019T0/1-1369 LGEAEEKIKV LHSALKATQT ELLELRRKYD EEAASKADEV GLIMTNLEKA BACU013608/1-1265 ---------- ---------- ---------- ---------- ---MTNLEKA 251 300 ENSP00000261726/1-1486 NQRAEAAQRE VESLREQLAS VNSSIRLACC SPQGPSGDKV NFTLCSGPRL ENSBTAP00000029613/1-1502 NQRAEAAQRE VESLREQLAS VNSSIRLACC SPQGPSGDKV NFALCSGPRL ENSTTRP00000000892/1-1469 NQRAEAAQRE VESLREQLAS VNSSIRLACC SPQGPSGDKV NFALCSGPRL bmy_07019T0/1-1369 NQRAEAAQRE VESLREQLAS VNSSIRLACC SPQGPSGDKV NFALCSGPRL BACU013608/1-1265 NQRAEAAQRE VESLREQLAS VNSSIRLACC SPQGPSGDKV NFALCSGPRL 301 350 ENSP00000261726/1-1486 EAALASKDRE ILRLLKDVQH LQSSLQELEE ASANQIADLE RQLTAKSEAI ENSBTAP00000029613/1-1502 EAALASKDRE ILRLLKDVQH LQSSLQELEE TSAHQIADLE RQLTAKSEAI ENSTTRP00000000892/1-1469 EAALASKDRE ILRLLKDVRH LQNSLQELEE TSANQIADLE RQLMAKSEAI bmy_07019T0/1-1369 EAALASKDRE ILRLLKDVQH LQNCLQELEE ASASQIADLE RQLTAKSEAI BACU013608/1-1265 EAALASKDRE ILRLLKDVQH LQNSLQELEE TSANQIADLE RQLTAKSEAI 351 400 ENSP00000261726/1-1486 EKLEEKLQAQ SDYEEIKTEL SILKAMKLAS STCSLPQGMA KPEDSLLIAK ENSBTAP00000029613/1-1502 EKLEEKLQAQ SDYEEIKTEL SILKAMKLAS NTCSLPQGMA KPEDSLLLAK ENSTTRP00000000892/1-1469 EKLEEKLQAQ SDYEEIKTEL SILKAMKLAS NTCSLPQGMA KPEDSLLMAK bmy_07019T0/1-1369 EKLEEKLQAQ SDYEEIKTEL SILKAMKLAA NTCSLPQGMA KPEDSLLMAK BACU013608/1-1265 EKLEEKLQAQ SDYEEIKTEL SILKAMKLAA NTCSLPQGMA KPEDSLLMAK 401 450 ENSP00000261726/1-1486 EAFFPTQKFL LEKPSLLASP EEDPSEDDSI KDSLGTEQSY PSPQQLPPPP ENSBTAP00000029613/1-1502 EAFFPAQKFL LEKPGLLASP EEDPSEDDSI KDSLGTEQSY PSPPQLPPPP ENSTTRP00000000892/1-1469 EAFFPAQKFL LEKPGLLASP EEDHSEDVAI KDSLGTEQSY PSPPQLPPPP bmy_07019T0/1-1369 ETFFPVQKFL LEKPGLLASP ---------- ---------- ---------- BACU013608/1-1265 EAFFPAQKFL LEKPGLLASP EEDPSEDDAI KDCLGTEQSY PSPPQLPPPP 451 500 ENSP00000261726/1-1486 GPEDPLSPSP GQPLLGPSLG PDGTRTFSLS PFPSLASGER L--------- ENSBTAP00000029613/1-1502 GPEDPLSPSP GQPLLGPSLG PDGPRTFSLS PFPSLASAER LTGDTLLSKH ENSTTRP00000000892/1-1469 GPEDPLSPSP GQPLLGPGLG PDGPRTFSLS PFPSLASGER L--------- bmy_07019T0/1-1369 ---------- ---------G PDGPQTFSLS PFPSLASGER LAGDTLLSKH BACU013608/1-1265 GPEDPLSPSP GQPLLGPGLG PDGPRTFSLS PFPSLASGER LAGDTLLSKH 501 550 ENSP00000261726/1-1486 MMPPAAFKGE AGGLLVFPPA FYGAKPPTAP ATPAPGPEPL GGPEPADGGG ENSBTAP00000029613/1-1502 MMPPTAFKGE AGGLLVFPPA FYGAKPPTAP ATPAPGPEPP GGPEPAEGGG ENSTTRP00000000892/1-1469 MMPPAAFKGE AGGLLVFPPA FYGAKPPTAP ATPAPGPEPP GGPEPAEGSG bmy_07019T0/1-1369 MMPPAAFKGE AGGLLVFPPA FYGAKPPPAP ATPAPGPEPP GGPEPAEGSG BACU013608/1-1265 MMPPATFKGE AGGLLVFPPA FYGAKPPPAP ATPAPGPEPP GGPEPAEGSG 551 600 ENSP00000261726/1-1486 GG--AAGPGA EEEQLDTAEI AFQVKEQLLK HNIGQRVFGH YVLGLSQGSV ENSBTAP00000029613/1-1502 GGMATAGAGT EEEQLDTAEI AFQVKEQLLK HNIGQRVFGH YVLGLSQGSV ENSTTRP00000000892/1-1469 GGVATAGAGA EEEQLDTAEI AFQVKEQLLK HNIGQRVFGH YVLGLSQGSV bmy_07019T0/1-1369 GGVATAGAGA EEEQLDTAEI AFQVKEQLLK HNIGQRVFGH YVLGLSQGSV BACU013608/1-1265 GGVATAGAGT EEEQLDTAEI AFQVKEQLLK HNIGQRVFGH YVLGLSQGSV 601 650 ENSP00000261726/1-1486 SEILARPKPW RKLTVKGKEP FIKMKQFLSD EQNVLALRTI QVRQRGSITP ENSBTAP00000029613/1-1502 SEILARPKPW RKLTVKGKEP FIKMKQFLSD EQNVLALRTI QVRQRGSITP ENSTTRP00000000892/1-1469 SEILARPKPW RKLTVKGKEP FIKMKQFLSD EQNVLALRTI QVRQRGSITP bmy_07019T0/1-1369 SEILARPKPW RKLTVKGKEP FIKMKQFLSD EQNVLALRTI QVRQRGSITP BACU013608/1-1265 SEILARPKPW RKLTVKGKEP FIKMKQFLSD EQNVLALRTI QVRQRGSITP 651 700 ENSP00000261726/1-1486 RIRTPETGSD DAIKSILEQA KKEIESQKGG EPKTSVAPLS IANGTTPAS- ENSBTAP00000029613/1-1502 RIRTPETGSD DAIKSILEQA KKEIESQKGG EPKNSAAPLS ITNGTAPAST ENSTTRP00000000892/1-1469 RIRTPETGSD DAIKSILEQA KKEIESQKGG EPKNSTAPLS ITNGTAPAS- bmy_07019T0/1-1369 RIRTPETGSD DAIKSILEQA KKEIESQKG- ---------- -----APAS- BACU013608/1-1265 RIRTPETGSD DAIKSILEQA KKEIESQKGG EPKNSTAPLS ITNGTAPAS- 701 750 ENSP00000261726/1-1486 TSEDAIKSIL EQARREMQAQ QQALLEMEVA PRGRSVPPSP PERPSLATAS ENSBTAP00000029613/1-1502 TSEDAIKNIL EQARREMQAQ QQALLEMEAG ARGRSVPPSP PERPSLAAMS ENSTTRP00000000892/1-1469 TSEDAIKNIL EQARREMQAQ QQALLEMEAG PRGRSVPPSP PERPSLAAMS bmy_07019T0/1-1369 TSEDAIKNIL EQARREMQAQ QQALLEMEAG PRGRSVPSSP PERPSLAAVS BACU013608/1-1265 TSEDAIKNIL EQARREMQAQ QQALLEMEAG PRGRSVPSSP PERPSLAAVS 751 800 ENSP00000261726/1-1486 QNGAPALVKQ EE---GSG-- ---GPA---- QAPLPVLSPA AFVQSIIRKV ENSBTAP00000029613/1-1502 QNGAPTLVKQ EDSGVGSG-- ---GTSSSGT QTSLTVLSPA AFVQSIIRKV ENSTTRP00000000892/1-1469 QNGAPTHVKQ EE---GSG-- ---GTSSSAT QTSLTVLSPA AFVQSIIRKV bmy_07019T0/1-1369 QNGAPTHVKQ EESGVGGGGV SSGGTSSSAT QTSLTVLSPA AFVQSIIRKV BACU013608/1-1265 QNGAPTHVKQ EESGVGGGGV SSGGTSSSAT QTSLTVLSPA AFVQSIIRKV 801 850 ENSP00000261726/1-1486 KSEIGDAGYF DHHWASDRGL LSRPYASVSP SLSSSSSSGY SGQPNGRAWP ENSBTAP00000029613/1-1502 KSEIGDAGYF DHHWASDRGL LSRPYASVSP SLSSSSS--Y SGQPNGRAWP ENSTTRP00000000892/1-1469 KSEIGDAGYF DHHWASDRGL LSRPYASVSP SLSSSSSS-Y SGQPSGRAWP bmy_07019T0/1-1369 KSEIGDAGYF DHHWASDRGL LSRPYASVSP SLSSSSSS-Y SGQPNGRAWP BACU013608/1-1265 KSEIGDAGYF DHHWASDRGL LSRPYASVSP SLSSSSSS-Y SGQPNGRAWP 851 900 ENSP00000261726/1-1486 RGDEAPVPPE DEAAAGAEDE PPRTGELKAE GATAEAGA-- RLPYYPAYVP ENSBTAP00000029613/1-1502 RGDEAPAVPE DE-AAGSEDE PPRVGELKAE GGGPEGGGGG RLAYYPAYVP ENSTTRP00000000892/1-1469 RGDEAPTAPE EE-AAGSEDE PPRVGELKAE GA-AEAGSGG RLAYYPAYVP bmy_07019T0/1-1369 RGDEAPTAPE DE-AAGSEDE PPRVGELKAE GGSPEVGSGG RLAYYPAYVP BACU013608/1-1265 RGDEAPTAPE EE-AAGGEDE PPRVGELKVE GGGPEGGSGG RLAYYPAYVP 901 950 ENSP00000261726/1-1486 RTLKPTVPPL TPEQYELYMY REVDTLELTR QVKEKLAKNG ICQRIFGEKV ENSBTAP00000029613/1-1502 RTLKPTVPPL TPEQYELYMY REVDTLELTR QVKEKLAKNG ICQRIFGEKV ENSTTRP00000000892/1-1469 RTLKPTVPPL TPEQYELYMY REVDTLELTR QVKEKLAKNG ICQRIFGEKV bmy_07019T0/1-1369 RTLKPTVPPL TPEQYELYMY REVDTLELTR QVKEKLAKNG ICQRIFGEKV BACU013608/1-1265 RTLKPTVPPL TPEQYELYMY REVDTLELTR QVKEKLAKNG ICQRIFGEKV 951 1000 ENSP00000261726/1-1486 LGLSQGSVSD MLSRPKPWSK LTQKGREPFI RMQLWLSDQL GQAVGQQPGA ENSBTAP00000029613/1-1502 LGLSQGSVSD MLSRPKPWSK LTQKGREPFI RMQLWLSDQL GQAVGQQPSA ENSTTRP00000000892/1-1469 LGLSQGSVSD MLSRPKPWSK LTQKGREPFI RMQLWLSDQL GQAVSQQPSA bmy_07019T0/1-1369 LGLSQGSVSD MLSRPKPWSK LTQKGREPFI RMQLWLSDQL GQAVSQQPSA BACU013608/1-1265 LGLSQGSVSD MLSRPKPWSK LTQKGREPFI RMQLWLLGQL GQAVSQQPSA 1001 1050 ENSP00000261726/1-1486 SQASPTEPRS SPSPPPSPTE P-EKSSQEPL SLSLESSKEN QQPEGRSSSS ENSBTAP00000029613/1-1502 SQVSPTEPRS SPSPPPSPTE PLEKSSQEPL SLTLESSKEN QQPEGRSSSS ENSTTRP00000000892/1-1469 SQASPTEPRS SPSPPPSPTE PPEKTSQEPL SLTLESSKEN QQPEGRSSSS bmy_07019T0/1-1369 SQASPTEPRS SPSPPPSPTE PPEKTSQEPL SLTLESSKEN QQPEGRSSSS BACU013608/1-1265 SQASPTEPRS SPSPPPSPTE PPEKTSQEPL SLTLESSKEN QQPEGRSSSS 1051 1100 ENSP00000261726/1-1486 LSGKMYSGSQ APGGIQEIVA MSPELDTYSI TKRVKEVLTD NNLGQRLFGE ENSBTAP00000029613/1-1502 LSGKIYSGSQ TTGGIQEIVA MSPELDTYSI TKRVKEVLTD NNLGQRLFGE ENSTTRP00000000892/1-1469 LGGKMYSGSQ TTAGIQEIVA MSPELDTYSI TKRVKEVLTD NNLGQRLFGE bmy_07019T0/1-1369 LGGKMYSGSQ TTGGIQEIVA MSPELDTYSI TKRVKEVLTD NNLGQRLFGE BACU013608/1-1265 LGGKMYSGSQ TTGGIQEIVA MSPELDTYSI TKRVKEVLTD NNLGQRLFGE 1101 1150 ENSP00000261726/1-1486 SILGLTQGSV SDLLSRPKPW HKLSLKGREP FVRMQLWLND PHNVEKLRDM ENSBTAP00000029613/1-1502 SILGLTQGSV SDLLSRPKPW HKLSLKGREP FVRMQLWLND PHNVEKLRDM ENSTTRP00000000892/1-1469 SILGLTQGSV SDLLSRPKPW HKLSLKGREP FVRMQLWLND PHNVEKLRDM bmy_07019T0/1-1369 SILGLTQGSV SDLLSRPKPW HKLSLKGREP FVRMQLWLND PHNVEKLRDM BACU013608/1-1265 SILGLTQGSV SDLLSRPKPW HKLSLKGREP FVRMQLWLND PHNVEKLRDM 1151 1200 ENSP00000261726/1-1486 KKLEKKAYLK RRYGLISTGS DSESPATRSE CPSPCLQPQD LSLLQIKKPR ENSBTAP00000029613/1-1502 KKLEKKAYLK RRYGLISTGS DSESPATRSE CPSPCLQPQD LSLLQIKKPR ENSTTRP00000000892/1-1469 KKLEKKAYLK RRYGLISTGS DSESPATRSE CPSPCLQPQD LSLLQIKKPR bmy_07019T0/1-1369 KKLEKKAYLK RRYGLISTGS DSESPATRSE CPSPCLQPQD LSLLQIKKPR BACU013608/1-1265 KKLEKKAYLK RRYGLISTGS DSGPPATRSE CPSPCLQPQD LSLLQIKKPR 1201 1250 ENSP00000261726/1-1486 VVLAPEEKEA LRKAYQLEPY PSQQTIELLS FQLNLKTNTV INWFHNYRSR ENSBTAP00000029613/1-1502 VVLAPEEKEA LRKAYQLEPY PSQQTIELLS FQLNLKTNTV INWFHNYRSR ENSTTRP00000000892/1-1469 VVLAPEEKEA LRKAYQLEPY PSQQTIELLS FQLNLKTNTV INWFHNYRSR bmy_07019T0/1-1369 VVLAPEEKEA LRKAYQVEPY PSQQTIELLS FQLNLKTNTV INWFHNYRSR BACU013608/1-1265 VVLAPEEKEA LRKAYQMEPY PSQQTIELLS FQLNLKTNTV INWFHNYRSR 1251 1300 ENSP00000261726/1-1486 MRREMLVEGT QDEPDLDPSG GPGILPPGHS HPDPTPQSPD SETEDQKPTV ENSBTAP00000029613/1-1502 MRREMLVEGT QEEPDLDPSG GPGILPPGHS HPDPTPQSPD SEAEDQKPTV ENSTTRP00000000892/1-1469 MRREMLVEGT QEEPDLDPSG GPGILLPGHS HPDPTPQSPN SEAEDQKPTV bmy_07019T0/1-1369 MRREMLVEGT QEEPDLNPSG GPGILPPGHS HPDPTPQSPN SEAEDQKPTV BACU013608/1-1265 MRREMLVEGT QEEPDLDPSG GPGILPPGHS HPDPTPQSPN SEAEDQKPTV 1301 1350 ENSP00000261726/1-1486 KELELQEGPE ENSTPLTTQD KAQVRIKQEQ MEEDAEEEAG SQPQDSGELD ENSBTAP00000029613/1-1502 KELKLQEAPE ESVTHLTSQD KTPVRIKQEQ -TEEAEEQAG S--QDSKEPD ENSTTRP00000000892/1-1469 KELKLQEGPE ESITPLTTQD KTQVRIKQEQ -TEDAEEEAG S--QDSKELD bmy_07019T0/1-1369 KELKLQEGPE ESITPLTTQD KTQVRIKQEQ -TEDAEQEAG S--QDSEELD BACU013608/1-1265 KELKLQEGPE ESITPLTTPD KTQVRIKQEQ -TEDAEEEAG S--QDSKELD 1351 1400 ENSP00000261726/1-1486 KGQGPPKEEH PDPPGNDGLP KVAPGPLLPG GSTPDCPSLH PQQESEAGER ENSBTAP00000029613/1-1502 KGQGSPQEVH PDPLGDDGLP KAAPGLLLPG GTTPACPSLH PLPESEGGER ENSTTRP00000000892/1-1469 KGQVSPKEVH PDPLGNDGLP KAAPGLLLPG GATPACPSLQ PLQESEGGEW bmy_07019T0/1-1369 RGQGSPTEVH PDPLGNDGLP KAAPGLLLPG GTTPACPSLQ PLQESEGGEW BACU013608/1-1265 KGQGSPREVH PDPLGNDGLP KAAPGLLLPG GTTPACPSLQ PLQESEGGEW 1401 1450 ENSP00000261726/1-1486 LHPDPLSFKS ASESSRCSLE VSLNSPSAAS SPGLMMSVSP VPSSSAPISP ENSBTAP00000029613/1-1502 LHPDPLSFKS ASESSRCSLE VSLNSPSAAS SPGLMMSVSP VPSSSAPISP ENSTTRP00000000892/1-1469 LHPDPLSFKS ASESSRCSLE VSLNSPSAAS SPGLMMSVSP VPSSSAPISP bmy_07019T0/1-1369 LHPDPLSFKS ASESSRCSLE VSLNSPSAAS SPGLMMSVSP VPSSSAPISP BACU013608/1-1265 LHPDPLSFKS ASESSRCSLE VSLNSPSAAS SPGLMMSVSP VPSSSAPISP 1451 1500 ENSP00000261726/1-1486 SPPGAPPAKV PSASPTADMA GALHPSAKVN PNLQRRHEKM ANLNNIIYRV ENSBTAP00000029613/1-1502 SPPSTLPAKV PSASPTADTT GALHPSTKVN PNLQRRHEKM ANLNSIIYRL ENSTTRP00000000892/1-1469 SPPGTLPAKV PSASPTADAT GALHPSTKVN PNLQRRHEKM ANLNSIIYRL bmy_07019T0/1-1369 SPPGTLPAKV PSASPTADAT GALHPSTKVN PNLQRRHEKM ANLNSIIYRL BACU013608/1-1265 SPPGTLPAKV PSASPTADAT GALHPSTKVN PNLQRRHEKM ANLNSIIYRL 1501 1550 ENSP00000261726/1-1486 ERAANREEAL EWEF ENSBTAP00000029613/1-1502 ERAANREEAL EWEF ENSTTRP00000000892/1-1469 ERAANREEAL EWEF bmy_07019T0/1-1369 ERAANREEAL EWEF BACU013608/1-1265 ERAANREEAL EWEF