KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:40 2014 Check: 00 .. Name: ENSP00000299308/1-1078 Len: 1094 Check: 4181 Weight: 1.00 Name: ENSTTRP00000003284/1-1078 Len: 1094 Check: 7449 Weight: 1.00 Name: ENSBTAP00000029677/1-1062 Len: 1094 Check: 9737 Weight: 1.00 Name: bmy_22173T0/1-566 Len: 1094 Check: 7255 Weight: 1.00 Name: BACU013674/1-653 Len: 1094 Check: 585 Weight: 1.00 // 1 50 ENSP00000299308/1-1078 MFGAASRMDT TAVCTGGVTE SRGIVDSLQK FSSLPAYLPT NLHISNAEES ENSTTRP00000003284/1-1078 -IFSGMSADI TSGSIRGLTE SRAIVDSLQR FSSLPAYLPT SFHVSNAEES ENSBTAP00000029677/1-1062 ---------- -------VME SRAIVDSLQR FSSLPAYLPT SFHISNAEES bmy_22173T0/1-566 ---------- ---------- ---------- ---------- ---------- BACU013674/1-653 ---------- ---------- ---------- ---------M NFHCQVLQRA 51 100 ENSP00000299308/1-1078 FFLKEANQDL TRNSSLQARV EPFFIYRART PPIINASYGP FSVEKIIPQE ENSTTRP00000003284/1-1078 FFLKEANQDV TRNCSLQARV ESFFIYRARS PPMVNASYGP FSVEKTVPRE ENSBTAP00000029677/1-1062 FFLKEANQDI TRNSSLQTRV ESFFIYRARR SPVVNASYGP FSVEKMVPRE bmy_22173T0/1-566 ---------- ---------- ---------- ---------- ---------- BACU013674/1-653 F--------- ---------- ---------- ------SCGC I--------- 101 150 ENSP00000299308/1-1078 LLLTSTAFGN MDKFPFNWKL KSHILDSSIY SNRPKVQTLF YVTGMGWDDS ENSTTRP00000003284/1-1078 FMLTSAPFGN MGQFPFNWKL KAHILGSSIY SNRPKVQTLF YITGMGWADG ENSBTAP00000029677/1-1062 LMLTSTPFGH VGQFPFNWKV KAHILDSSIY SNRPKVQTLF YITGMGWADD bmy_22173T0/1-566 ---------- ---------- ---------- ---------- ------MR-- BACU013674/1-653 ---------- ---------- ---------- ---------- ------WR-- 151 200 ENSP00000299308/1-1078 DLTEDLPCVK MFAFPEAREV AASCRLQGAP GLCVAELELL PEWFSSGLDL ENSTTRP00000003284/1-1078 DPAEQLPCVK MFAFPEAREV AASCRLQGTP GLCVAELEVL PEWFSSGLDL ENSBTAP00000029677/1-1062 DPAEQLPCVK MFAFPEAREV AASCRLQGTP GLCVAELELL PEWFSSGLDL bmy_22173T0/1-566 ---------- ---------- ---------- ---------- ---------- BACU013674/1-653 ---------- FYPLPQG--- ---------- ---------- ---------- 201 250 ENSP00000299308/1-1078 EPEEEIPALL GGTTMELFFT LYPADKAGQC PLEEEGKWEN NIHSGLESPQ ENSTTRP00000003284/1-1078 EPEEEIPALL GGTAMELFFT LYPADQAGQC PLEEDSKWEN NIHSGQDSPP ENSBTAP00000029677/1-1062 EPEEEIPALL GGTAMELFFA LYPAGPAGQC PLEEDGKWEN NIHSGQDSPP bmy_22173T0/1-566 ---------- ---------- ---------- ---------- ---------- BACU013674/1-653 ---------- ---------- --PADASGDS ---------- -------IPS 251 300 ENSP00000299308/1-1078 QAFPARERIG SVVVYPTQDD LKWSLVSLDE NVVISVPLNL VREGDTATFL ENSTTRP00000003284/1-1078 PAPAARERIG SVVVYPTQDD LRWSLLSLDE NVVLSVPLNL VREGDTATFL ENSBTAP00000029677/1-1062 PAPPARERIG SVMVYPTQDD LRWSLLNLDE NVVLSVPLNL IREGDTATFL bmy_22173T0/1-566 ---------- ---------- ---------- ---------- ---------- BACU013674/1-653 P--------- ---------- ---------- ---------- ---------- 301 350 ENSP00000299308/1-1078 VSLTSSSVAD QFTLRIKAAA GVKITAVRVS SEDQWAVQEE IDNGSTQTSA ENSTTRP00000003284/1-1078 VSLASGSVAD HFTLRIKAAA GVKITAVRVS SEDQWAVQEE IDSDSVQTAA ENSBTAP00000029677/1-1062 VSLTSGSVAD HFTLRIKAAA GVKITAVRVS SEDQWAVQEE IDNDSVQTTA bmy_22173T0/1-566 ---------- ---------- ---------- ---------- ---------- BACU013674/1-653 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000299308/1-1078 TLTCMGHRPD TQSRVNGSFY EILQVDFGID NSSDLAGAQQ ITWQVEYPIE ENSTTRP00000003284/1-1078 TLTCVGHHPD TQSRTNGSFY EILQVDFGID NSSGLAGAQQ ITWQVEYPVE ENSBTAP00000029677/1-1062 TLTCVGHHPD TQSRTNGSFY EILQVDFGVD NSSGLAGAQQ ITWQVEYPVE bmy_22173T0/1-566 ---------- ---------- ---------- ---------- ---------- BACU013674/1-653 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000299308/1-1078 DSMSELVVSE IFVSQTTFVG IVPLAMDTEV LNTAILTGKP VSVPVKVVGV ENSTTRP00000003284/1-1078 DAARELVVSE IFVSHTSFVG IVPLAMDTEV LNTAILTGKV VSVPVKVVAV ENSBTAP00000029677/1-1062 DAPRELVVSE IFISQTSFVG IVPLAMDSEV LNTAILTGKA VSVPVKVVAV bmy_22173T0/1-566 ---------- ---------- ---------- ---------- ---------- BACU013674/1-653 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000299308/1-1078 QEDGSVVDVS ESVECKSADE DVIKVSNNCD SIFVNGKEMK SKVDTIVNFT ENSTTRP00000003284/1-1078 QEDGSVVDVS EAVECRSADE DVVKVSNGCD SIFANGKEMK SKVDTIVNFT ENSBTAP00000029677/1-1062 QEDGSVVDVS EAVECRSADE DVIKVSNGCD SVFVNGKEMK SKVDTIVNFT bmy_22173T0/1-566 ---------- ---------- -----TKGCA G--------- ---------- BACU013674/1-653 ---------- ---------- ---KVSNGCD SIFANGKEMK SKVDTIVNFT 501 550 ENSP00000299308/1-1078 HQHFTSQFEV TVWAPRLPLQ IEISDTELSQ IKGWRIPVAA NRRPTRESDD ENSTTRP00000003284/1-1078 HQHFTSQLEV TVWAPRLPLQ VDISDTELSQ IKGWRIPVAS NRRPARDSED ENSBTAP00000029677/1-1062 HQHFTSQLEV TVWVPRLPLQ VEISDTELSQ IKGWRIPVAS NRRPTRDSED bmy_22173T0/1-566 ---------- -------PLS TTMT------ ---FALPCVC -PRPTRDSED BACU013674/1-653 HQHFTSQLEI TVWAPRLPLQ VEISDTELSQ IKGWRIPVAS NRRPTRDSED 551 600 ENSP00000299308/1-1078 EDDEEKKGRG CSLQYQHATV RVLTQFVAES PDLGQLTYML GPDWQFDITD ENSTTRP00000003284/1-1078 EEDEERKGRG CSLQHQRALV RVLTQFVAES PDSGQLSYML GPDWQFDVTD ENSBTAP00000029677/1-1062 EEDEEKKGRG CSLQYQHALV RVLTQFVAES PDSGQLSYML GPDWQFDITN bmy_22173T0/1-566 EEDEEKKGRG CSLQYQHAVV RVLTQFVAES PDSGQLSYML GPDWQFDITD BACU013674/1-653 EEDEEKKGRG CSLQYQHALV RVLTQFVAES PNSGQLSYML GPDWQFDITD 601 650 ENSP00000299308/1-1078 LVTEFMKVEE PKIAQLQDGR TLAGREPGIT TVQVLSPLSD SILAEKTVIV ENSTTRP00000003284/1-1078 LVMDFMKVEE PRIAQLQDGR TLVGREPGIT TVQVLSPLSD SILAEKTVTV ENSBTAP00000029677/1-1062 LVMDFMKVEE PRIAQIQDGR TLVGREPGIT TVQVLSPLSD SILAEKTVTV bmy_22173T0/1-566 LVMDFMKVEE PRIAQLQDGR TLVGREPGIT TVQVLSPLSD SILAEKTVTV BACU013674/1-653 LVMDFMKVEE PRIAQLQDGR TLVGREPGIT TVQVLSPLSD SILAEKTVTV 651 700 ENSP00000299308/1-1078 LDDRVTIAEL GVQLVAGMS- --------LS LQPHRADKRA IVSTAAALDV ENSTTRP00000003284/1-1078 LDDRVTIVDL GVQLVAGLS- --------LS LRPHRLDKRA IISTAVAQDV ENSBTAP00000029677/1-1062 LDDRVTIADL GVQLVAGLS- --------LS LQPHRLDKRA IVSTAAAQDV bmy_22173T0/1-566 LDDRVTIVDL GVQLVAGLS- --------LS LQPHRLDKRA IISTAAAQDV BACU013674/1-653 LDDRVTIVDL GVQLVAGLSL SXXXXXXXLS LQPHRSDKRA IISTAAAQDV 701 750 ENSP00000299308/1-1078 LQSPQQ---- --EAIVSSWI LFSDGSVTPL DIYDPKDYSV TVSSLDEMVV ENSTTRP00000003284/1-1078 LRAPQQ---- --EAIVSSWI LFSDGSVTPL DIYDSKDFSV TVSSLDEMVV ENSBTAP00000029677/1-1062 LQAPQQ---- --EAIVSSWI LFSDGSVTPL DIYDPKDFSV TVSSLDEMVV bmy_22173T0/1-566 LQAPQQQVPF DTEAIVSSWI LFSDGSVTPL DIYDPKDFSV TVSSLDEMVV BACU013674/1-653 LQAPQQ---- --EAIVSSWI LFSDGSVTPL DIYDPKDFSV TVSSLDEMVV 751 800 ENSP00000299308/1-1078 SVQANLESKW PIVVAEGEGQ GPLIKLEMMI SEPCQKTKRK SVLAVGKGNV ENSTTRP00000003284/1-1078 SVQANLQSKW PVVVAEGEGQ GPLIKLEMMI SEPCQKTKRK SVLAVGKGNV ENSBTAP00000029677/1-1062 SVQASLQSKW PVVVAEGEGQ GPLIKLEMMI SEPCQKTKRK SILAVGKGNV bmy_22173T0/1-566 SVQANLQSKW PVVVAEGEGQ GPLIKLEMMI SEPCQKTKRK SILAVGKGNI BACU013674/1-653 SVQANLQSKW PVVVAEGEGQ GPLIKLEMMI SEPCQKTKRK SILAVGKGNI 801 850 ENSP00000299308/1-1078 KVKFEPSSDE HQGGSNDIEG INREYKDHLS NSIEREGNQE RAVQEWFHRG ENSTTRP00000003284/1-1078 KVKFEANTGE HQGGTNDVEG GSREYKDHVR NSIEREGGQE RAVQQWFQHG ENSBTAP00000029677/1-1062 KVKFEPSIGE HQGGTNDIEG INREYKDHLS NTIDREGNQE RAVQEWFQHG bmy_22173T0/1-566 KVKFEPNIDE HQGGTNDIEG INREYKDHLS NTIEREGNQE RAVQEWFQHG BACU013674/1-653 KVKFEPNIDE HQGGTNDIEG INREYKDHLS NTIEREGNQE RAVQEWFQHG 851 900 ENSP00000299308/1-1078 TPVGQEESTN KSTTPQSPME GKN-KLLKSG GPDAFTSFPT QGKSPDPNNP ENSTTRP00000003284/1-1078 APGGHGERTN QSTTPQSPME GKDKKLLKSG GPDAFTSFPA QGKLPEPHNP ENSBTAP00000029677/1-1062 ASVGHEEHTN KSTTPQSPME GKDKKMLKSG GPDAFTSFPA QGKSPEPHNP bmy_22173T0/1-566 ASVGHEESTN KSTTPQSPME GKDKKLLKSG GPDAFTSFPT QGKLPEPHNP BACU013674/1-653 ASVGHEESTN KSTTPQSPMG GKDKKLLKSG GPDAFTSFPT HGKLPEPHNP 901 950 ENSP00000299308/1-1078 SDLTVTSRGL TDLEIGMYAL LCVFCLAILV FLINCVAFAW KYRHKRFAVS ENSTTRP00000003284/1-1078 SDLTVTSRGL TDLEIGMYAL LCVFCLAILV FLINCVAFAW KYRHKRFAVS ENSBTAP00000029677/1-1062 SDLTVTSRGL TDLEIGMYAL LCVFCLAILV FLINCVAFAW KYRHKRFAVS bmy_22173T0/1-566 SDLTVTSRGL TDLEIGMYAL LCVFCLAILV FLINCVAFAW KYRHKRFAVS BACU013674/1-653 SDLTVTSRGL TDLEIGMYAL LCVFCLAILV FLINCVAFAW KYRHKRFAVS 951 1000 ENSP00000299308/1-1078 EQGNIPHSHD WVWLGNEVEL LENPVDITLP SEECTTMIDR GLQFEERNFL ENSTTRP00000003284/1-1078 EQGDIPHSHD WVWLGNDVEL LENPVDVTLP SEECTTMIDR GLQSEERNFL ENSBTAP00000029677/1-1062 EQGNIPHSHD WVWLGNDVEL LENPVDVTLP SEECTTMIDR GLQFEERNFL bmy_22173T0/1-566 EQGNIPHSHD WVWLGNDVEL LENPVDVTLP SEECTTMIDR GLQPEERNFL BACU013674/1-653 EQGDIPHSHD WVWLGNDVEL LENPVDVTLP SEECTTMIDR GLQPEERNFL 1001 1050 ENSP00000299308/1-1078 LNGSSQKTFH SQLLRPSDYV YEKEIKNEPM NSSGPKRKRV KFTSYTTILP ENSTTRP00000003284/1-1078 LNGGSQKTFP SQLLRPSDFV YEKDMKNEPL SSSGPKRKRV KFTSYTTILP ENSBTAP00000029677/1-1062 LNGGSQKTFH SQLLRPSDYV YEKDMKNDPL SSTGPKRKRV KFTSYTTILP bmy_22173T0/1-566 LNGGSQKTFP SQLLRPSDYV YEKDVKNEPL SSSGPKRKRV KFTSYTTILP BACU013674/1-653 LNGGSQKTFP SQLLRPSDYV YEKDVKNEPL GSSGPKRKRV KFTSYTTILP 1051 1100 ENSP00000299308/1-1078 EDGGPYTNSI LFDSDDNIKW VCQDMGLGDS QDFRDYMESL QDQM ENSTTRP00000003284/1-1078 EDGGPYTNSI PFDSDDSIQW VCPDMGLGAS QGFREYMERL QDQM ENSBTAP00000029677/1-1062 EDGGPYTNSI LFDSDDSIQW VCPDMGLGES QGFRDYMERL QDQM bmy_22173T0/1-566 EDGGPYTNSI LFDSDDSIQW VCPDMGLGAS QGFRNYTERL QDQM BACU013674/1-653 EDGGPYTNSI LFDSDDSIQW VCPDMGLGAS QGFRDYVERL QDQM