KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:41 2014 Check: 00 .. Name: BACU009029/1-582 Len: 639 Check: 9346 Weight: 1.00 Name: ENSP00000353767/1-603 Len: 639 Check: 3101 Weight: 1.00 Name: ENSBTAP00000029696/1-591 Len: 639 Check: 5790 Weight: 1.00 Name: ENSTTRP00000012813/1-588 Len: 639 Check: 102 Weight: 1.00 Name: bmy_20541T0/1-505 Len: 639 Check: 6826 Weight: 1.00 // 1 50 BACU009029/1-582 MAPGRRLFCG AEPPTSTPHC TLCP------ ---------- ---------- ENSP00000353767/1-603 --MRRRAARG PGPPPPGPGL SRLPLPLLLL LALGTRGGCA APAPAPRAED ENSBTAP00000029696/1-591 --MRRRAARG PGPPFPRAGV PPLP---LLL LALAACGGCA --APAPHTED ENSTTRP00000012813/1-588 -MRRRRATRG PGPSPPGPGS RPLP----LL LRPGRRGGAL --APALRAKD bmy_20541T0/1-505 ---------- ---------- ---------- ---------- ---------- 51 100 BACU009029/1-582 ----QEWLSR FGYLPPADPE TGQLQTPEEL SKAIVAMQRF GGLEATGVLD ENSP00000353767/1-603 LSLGVEWLSR FGYLPPADPT TGQLQTQEEL SKAITAMQQF GGLEATGILD ENSBTAP00000029696/1-591 LSLGVEWLSR FGYLPPADPE TGQLQTPEEL SKAIVAMQQF GGLEATGVLD ENSTTRP00000012813/1-588 LXXXXEWLSR FGYLPPADPD TGQLQTPEEL SKAIVAMQQF GGLEATGVLD bmy_20541T0/1-505 ---------- ---------- ---------- ---------- ---------- 101 150 BACU009029/1-582 EATLALMRTP RCSLPDLPAA ALARRRRQAP APTKWGRRNL SWR------- ENSP00000353767/1-603 EATLALMKTP RCSLPDLPVL TQARRRRQAP APTKWNKRNL SWR------- ENSBTAP00000029696/1-591 EATLALMKTP RCSLPDLPAV ALARRRRQAP ALTKWNKRNL SWR------- ENSTTRP00000012813/1-588 EATLALMRTP RCSLPDLPAA APARRTRQAP APTKWRKRNL SWR------- bmy_20541T0/1-505 ------MRTP RCSLPDLPAA APARRRRQAL APTKWGRRNL SWRWVGGAPP 151 200 BACU009029/1-582 ------VRTF PRDSPLGRDT VRALMHYALK VWSDLTPLNF HEVAGSAADI ENSP00000353767/1-603 ------VRTF PRDSPLGHDT VRALMYYALK VWSDIAPLNF HEVAGSAADI ENSBTAP00000029696/1-591 ------VRTF PRDSPLGRDT VRALMHYALK VWSDITPLNF HEVAGSAADI ENSTTRP00000012813/1-588 ------VRTF PRDSPLGRDT VRALMHYALK VWSDLTPLNF HEVAGSAADI bmy_20541T0/1-505 GLAFPGVRTF PRDSPLGRDT VRALMHYALK VWSDLTPLNF HEVAGSAADI 201 250 BACU009029/1-582 QIDFSTADHN DRYPFDGPGG AVAHAFFPGD HHTAGDTHFD DDEAWTFRSS ENSP00000353767/1-603 QIDFSKADHN DGYPFDGPGG TVAHAFFPGH HHTAGDTHFD DDEAWTFRSS ENSBTAP00000029696/1-591 QIDFSTADHN DRYPFDGPGG TVAHAFFPGD HHTAGDTHFD DDEAWTFRSS ENSTTRP00000012813/1-588 QIDFSTADHN DRYPFDGPGG AVAHAFFPGD HHTAGDTHFD DDEAWTFRSS bmy_20541T0/1-505 QIDFSTADHN DRYPFDGPGG AVAHAFFPGD HHTAGDTHFD DDEAWTFRSS 251 300 BACU009029/1-582 DAHGMDLFAV AVHEFGHAIG LSHVAATRSI MQPYYQGPVG DPLRYELPYE ENSP00000353767/1-603 DAHGMDLFAV AVHEFGHAIG LSHVAAAHSI MRPYYQGPVG DPLRYGLPYE ENSBTAP00000029696/1-591 DAHGMDLFAV AVHEFGHAIG LSHVAATRSI MQPYYQGPVG DPLRYGLPYE ENSTTRP00000012813/1-588 DAHGMDLFAV AVHEFGHAIG LSHVAATRSI MQPYYQGPVG DPLRYGLPYE bmy_20541T0/1-505 DAHGMDLFAV AVHEFGHAIG LSHVAATRSI MQPYYQGPVG DPLRYGLPYE 301 350 BACU009029/1-582 DRVRVWQLYG VRESVSPTAQ PDTPEPEEPP LLPEPPDDRS SSPPRKDVLH ENSP00000353767/1-603 DKVRVWQLYG VRESVSPTAQ P-----EEPP LLPEPPDNRS SAPPRKDVPH ENSBTAP00000029696/1-591 DRVRVWQLYG VRESVSPTAQ PDTPESEEPP LLPEPPDNRS STLPRKDMPH ENSTTRP00000012813/1-588 DRVRVWQLYG VRESVSPTAQ PDAPEPEEPP LLPEPPDDRA STPPGKDVPH bmy_20541T0/1-505 DRVRVWQLYG VRESVSPTAQ PDTPEPEEPP LLPEPPDDRS SSPPRKDVPH 351 400 BACU009029/1-582 RCSAHFDAVA QIRGEAFFFK GKYFWRLTRD RHLVSLQPAQ VHRFWRGLPL ENSP00000353767/1-603 RCSTHFDAVA QIRGEAFFFK GKYFWRLTRD RHLVSLQPAQ MHRFWRGLPL ENSBTAP00000029696/1-591 RCSAHFDAVA QIRGEAFFFK GKYFWRLTRD RHLVSLQPAQ VHRFWRGLPL ENSTTRP00000012813/1-588 RCSGHFDAVA QIRGEAFFFK GKYFWRLTRD RHLVSLQPAQ VHRFWRGLPL bmy_20541T0/1-505 RCSAHFDAVA QIRGEAFFFK GKYFWRLTRD RHLVSLQPAQ VHRFWRGLPL 401 450 BACU009029/1-582 HLDSVDAVYE RTSDHKIVFF KAQLPGAARS GAASQPGPLS APRPRKDVLH ENSP00000353767/1-603 HLDSVDAVYE RTSDHKIVFF KGDRYWVFKD NNVEE----G YPRPVSDFSL ENSBTAP00000029696/1-591 HLDSVDAVYE RTSDHKIVFF KGDRYWVFKD NNVEE----G YPRPVSDFGL ENSTTRP00000012813/1-588 RLDSVDAVYE RTSDHKIVFF KGDRYWVFKD NNVEE----G YPRPISDFGL bmy_20541T0/1-505 HLESVDAVYE RTSDHKIVFF KGDRYWVFKD NNVEE----G YPRPISDFGL 451 500 BACU009029/1-582 RCSAHFDAVA QIRGEA-FFF KGKYFWRLT- RDRHLVSLQP AQVHRFWRGL ENSP00000353767/1-603 PPGGIDAAFS WAHNDRTYFF KDQLYWRYDD HTRHMDPGYP AQSPL-WRGV ENSBTAP00000029696/1-591 PSGGVDAAFS WAHNDKTYFF KDQLYWRYDE HTRRMDPGHP AQSPP-WRGV ENSTTRP00000012813/1-588 PPGGVDAAFS WAHNDKTYFF KDQLYWRYDE HTRRMDPGHP AQSPP-WRGI bmy_20541T0/1-505 PPGGVDAAFS WAHNDKTYFF KDQLYWRYDE HTRRMDPGHP AQSPP-WRGV 501 550 BACU009029/1-582 PLHLDSVDAV YERTSDHKIV FFKGAAYFFR GTEYWKVLDG ELEVAPGCPQ ENSP00000353767/1-603 PSTLDDA--- --------MR WSDGASYFFR GQEYWKVLDG ELEVAPGYPQ ENSBTAP00000029696/1-591 PSTLDDA--- --------MR WSDGAAYFFR GKEYWKVLDG ELEVAPGYPQ ENSTTRP00000012813/1-588 PSTLDDA--- --------MR WSDGAAY-SR AKEYWKVMDG ELEVAPGYPQ bmy_20541T0/1-505 PSTLDDA--- --------MR WSDGAAYFFR GTEYWKVLDG ELEVAPGCPQ 551 600 BACU009029/1-582 STARDWLVCR DPPAD---PE GADGEAGAHA RPGQRDHSRS EDAYEVCSCT ENSP00000353767/1-603 STARDWLVCG DSQADGSVAA GVDAAEGPRA PPGQHDQSRS EDGYEVCSCT ENSBTAP00000029696/1-591 STARDWLVCR DLPAD---PE GMDGEAGAHA RPGQRDHSRS EDAYEVCSCT ENSTTRP00000012813/1-588 STARDWLVCR DPPAD---PE DADGEAGAH- RPGQRDHSRS EDAYEVC-CT bmy_20541T0/1-505 STARDWLVCR DPPAD---PE GADGEAGAHA RPGQRDHSRS EDAYEVCSCT 601 650 BACU009029/1-582 SIAAPAPRAA DPLLAALLSF ---------L WTAARALAL ENSP00000353767/1-603 SGASSPPGAP GPLVAATMLL LLPPLSPGAL WTAAQALTL ENSBTAP00000029696/1-591 SLAAPAPRAV GPLLAVLLSF ---------L WTSAKALTL ENSTTRP00000012813/1-588 SIAAAAPRAA GPLLAALLSL ---------L WTAARALAL bmy_20541T0/1-505 SIAAPAPRAA DPLLAALLSF ---------L WTAARALAL