KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:39:41 2014 Check: 00 .. Name: ENSBTAP00000029699/1-1037 Len: 1372 Check: 9288 Weight: 1.00 Name: ENSTTRP00000007154/1-1033 Len: 1372 Check: 5612 Weight: 1.00 Name: bmy_19852T0/1-1306 Len: 1372 Check: 843 Weight: 1.00 Name: BACU005244/1-952 Len: 1372 Check: 9297 Weight: 1.00 // 1 50 ENSBTAP00000029699/1-1037 MEVVGDFEYS KRDLVGHG-- ---------- --AFAVVFRG ---------- ENSTTRP00000007154/1-1033 QEEMCDLEYS KRDFVGR--- ---------- --TLTVVFRG ---------- bmy_19852T0/1-1306 --GVGDPLPE ARLLAGPAHG AQARALPPAS ISSWALIFPA EGARLPRRAL BACU005244/1-952 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000029699/1-1037 ---------- ---------- ------RHRQ KTDWEVAIKS INKKNLSKSQ ENSTTRP00000007154/1-1033 ---------- ---------- ------RHIQ KTXXXXXXXX XXXXXXXXXX bmy_19852T0/1-1306 RLRRCADVAE GLQSARSGRR VRAGLLRGRA KTDWEVAIKS INKKNLSKSQ BACU005244/1-952 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000029699/1-1037 ILLGKEIKIL KELQHENIVA LYDVQELPNS VFLVMEYCNG GDLADYLQAK ENSTTRP00000007154/1-1033 XXXXXXXXXX XELQHENIVA LYDVQELPNS VFLVMEYCNG GDLADYLQAK bmy_19852T0/1-1306 ILLGKEIKIL KELQHENIVA LYDVQELPNS VFLVMEYCNG GDLADYLQAK BACU005244/1-952 ---------- ---------- ---------- ----MEYCNG GDLADYLQAK 151 200 ENSBTAP00000029699/1-1037 GTLSEDTIRV FLHQIAAAMR ILHSKGIIHR DLKPQNILLS YASRKKSSVS ENSTTRP00000007154/1-1033 GTLSEDTIRV FLHQIAAAMR ILHTKGIIHR DLKPQNILLS YANRRKATVS bmy_19852T0/1-1306 GTLSEDTIRV FLHQIAAAMR VLHSKGIIHR DLKPQNILLS YANRRKSTVS BACU005244/1-952 GTLSEDTIRV FLHQIAAAMR VLHSKGIIHR DLKPQNILLS YANRRKSTVS 201 250 ENSBTAP00000029699/1-1037 GIRIKIADFG FARYLHSNMM AATLCGSPMY MAPEVIMSQH YDAKADLWSI ENSTTRP00000007154/1-1033 GIRIKIADFG FARYLHSNMM AATLCGSPMY MXXXXXXXQH YDAKADLWSI bmy_19852T0/1-1306 GIRIKIADFG FARYLHSNMM AATLCGSPMY MAPEVIMSQH YDAKADLWSI BACU005244/1-952 GIRIKIADFG FARYLHSNMM AATLCGSPMY MAPEVIMSQH YDAKADLWSI 251 300 ENSBTAP00000029699/1-1037 GTVIYQCLVG KPPFQQANSP QDLRMFYEKN RNLMPSIPRE TSPYLANLLL ENSTTRP00000007154/1-1033 GTVIYQCLVG KPPF-QANSP QDLRMLYEKN RNLTPSIPRE TSPYLANLLL bmy_19852T0/1-1306 GTVIYQCLVG KPPF-QANSP QDLRMLYEKN RNLMPSIPRE TSPYLANLLL BACU005244/1-952 GTVIYQCLVG KPPF-QANSP QDLRMLYEKN RNLMPSIPRE TSPYLANLLL 301 350 ENSBTAP00000029699/1-1037 GLLQRNQKDR MDFEAFFSHP FLEQVPAKKS CPVPVPMYAG SASGGSYGSS ENSTTRP00000007154/1-1033 GLLQRNQKDR MDFEAFFSHP FLEQVPVKKS CP-PVPVYAG STSEGPCSSS bmy_19852T0/1-1306 GLLQRNQKDR MDFEAFFSHP FLEQVPVKKS CPVPVPVYAG SASEGPCSSS BACU005244/1-952 GLLQRNQKDR MDFEAFFSHP FLEQVPVKKS CPVPVPVYAG SASEGPCSSS 351 400 ENSBTAP00000029699/1-1037 PSCRFVSPPS LPDMQHIQEE NLSSPPLGPP NYLQVSKDSA STSSKNSSCD ENSTTRP00000007154/1-1033 PSCRFASPPS LPDVQHIQEE SLPSPPLGPP SSLQVSKDSA STSSKNSSCD bmy_19852T0/1-1306 PSCRFASPPS LPDMQHIQEE NLSSPPLGPP NYLQVSKDSA STSSKNSSCD BACU005244/1-952 PSCRFASPPS LPDMQHIQEE NLSSPPLGPP NYLQVSKDSA STSSKNSSCD 401 450 ENSBTAP00000029699/1-1037 TDDFVLVPHN ISSDHSYDMP MGTAGRRASN EFLVFGGQCQ PSVSPHSTAA ENSTTRP00000007154/1-1033 TDDFVLVPHN TSSDHSYDML MGTAGRRASN EFLVCGGQCQ PTVSPHSAAT bmy_19852T0/1-1306 TDDFVLVPHS TS-------- ---------- -------QCQ PTVSPHSAAT BACU005244/1-952 TDDFVLVPHS TSSDHSYDMP MGTAGRHASN EFLVCGGQCQ PTVSPHSTAT 451 500 ENSBTAP00000029699/1-1037 PIPVPTQVRN YQRIEQNLTS TAGSSTNLHG SPRTEEVLET NTSPLGFLRP ENSTTRP00000007154/1-1033 PIPVPTQIRN YQRIEQNLTS TVNSGTNLHG SPRSAAVRRS NTSPMGFPRL bmy_19852T0/1-1306 PIPVPTQIRN YQRIEQNLSS TASSGTNLHG SPRSAVVRRS NTSPMGFPRL BACU005244/1-952 PIPVPTQIRN YQRIEQNLSS TASSGTNLHG SPRSAVVRRS NTSPMGFPRL 501 550 ENSBTAP00000029699/1-1037 GSCSPAPADA VPAIGRRLST GSSRPYSPSP LVGTIPEQFR QCCCGHLQGH ENSTTRP00000007154/1-1033 GSCSPVPADA VQAVGRRLST GSSRPYSPSP SVGTIPEQFS QCCCGHPQGQ bmy_19852T0/1-1306 GSCSPAPADA VQAVGRRLST GSSRPYSPSP SVGTIPEQFS QCCCGHPQGQ BACU005244/1-952 GSCSPVPADA VQAVGRRLST GSSRPYSPSP SVGTIPEQFS QCCCGHPQGQ 551 600 ENSBTAP00000029699/1-1037 ESRSRNSSGS PVPQAQSPQP VLLGARLQSA PTLTDIYQNK QKLRKQHSDP ENSTTRP00000007154/1-1033 ESKSRNWSGS PVPQPPSPQP LLLGARLQSA STLTDIYQSK QKLRKQHSDP bmy_19852T0/1-1306 ESRSRNWSGS PVPQPPSPQP LLLGARLQSA STLTDIYQNK QKLRKQHSDP BACU005244/1-952 ESRSRNWSGS PMPQPPSPQP LLLGARLQSA STLTDIYQNK QKLRKQHSDP 601 650 ENSBTAP00000029699/1-1037 VCPSQAGAGY SCSPQPSRPG SLGTSPTKHT GSSPRSSDWF FRTPLPTIIG ENSTTRP00000007154/1-1033 VCPSHAGAGC SCSPQPSRPG SLGTSPTKHA GSSPRSSDWF FKTPLPTIIG bmy_19852T0/1-1306 VCPSHAGAGC SCSPQPSRPG SLGTSPTKHA GSSPRT---- ---------- BACU005244/1-952 VCPSHAGAGC SCSPQPSRPG SLGTSPTKHA GSSPRSSDWF FKTPLPTIIG 651 700 ENSBTAP00000029699/1-1037 SPTKTTAPFK IPKTQASSNL LALATRHGPS EGQLKDGNNP RKCTHCVLVQ ENSTTRP00000007154/1-1033 SPTKTTAPFK IPKTQASSNL PALATRRGPS EGQLKDGSDP RGCSHCLSVQ bmy_19852T0/1-1306 ---------- ------SSNL LALATRRGPS EGQSKDGSDP RGCSHCLSVQ BACU005244/1-952 SPTKTTAPFK IPKTQASSNL LALAARRGPS EGQSKDGSDA RGCSHLLSVQ 701 750 ENSBTAP00000029699/1-1037 GGERQKSEHQ VKAAFGRSVS TGKLSDQQVK TPFGGHQGST DSLNTERPMD ENSTTRP00000007154/1-1033 GGERHKSEQQ VRAAFGRSVS TGKLSDQPVK TPLGGHQGST DSLNTERPMD bmy_19852T0/1-1306 GGERQTSEQQ VRAAFGRSVS TGKLSDQPVK TPLGGHQGST DSLT------ BACU005244/1-952 GGETQTSERQ VRAAFGRSVS TGKLSDQPVK TPLGGHQGST DSLSAERPMD 751 800 ENSBTAP00000029699/1-1037 TAPAGACGVA LAPAIGAAAS SRAVMFTVGS PPHRAAATTC THTGLRIRTT ENSTTRP00000007154/1-1033 IAPAGACGVA RAPSVGTAAS PRAVLFTVGS PPHRAATPAC THIVLRTRTT bmy_19852T0/1-1306 --PAGACGVA RAPSVGTAAS PRAVLFTVGS PPHRAATPAC THIVLRTRTT BACU005244/1-952 IAPAGACGVA WAPSVGTAAS PRAVLFTVGS PPHRAATPAC THIVLRTRTT 801 850 ENSBTAP00000029699/1-1037 SGGSSGSGGS LCSIGGRVCG GSPPGLCSGS PPPGAEAAPS LRHVPCGASP ENSTTRP00000007154/1-1033 S-GSSGSGGS LGSTGGRVSG GSPPGLCSGS PPLGAEAAPS LRHAPCGASP bmy_19852T0/1-1306 SGGSSGSGGS LGSAGGRVSG GSPPGPCSGS PPPGAEAAPS LRHAPCRASP BACU005244/1-952 SGGSSGSGGS LGSAGGRVSG GSPPGPCSGS PPLGAEAAPS LRHAPCGVSP 851 900 ENSBTAP00000029699/1-1037 PSLEGLVTFE APELPEETLM EQEHADTLRH LNSMLLFTEC VLDLTAVRGG ENSTTRP00000007154/1-1033 PSLEGLVAFE APELPEETLM EREHTDTFRH LNAMLLFTEC VLDLTAVRGG bmy_19852T0/1-1306 PSLEGLVAFE APELPEETLM EREHTDTFRH LNAMLLFTEC VLDLTAVRGG BACU005244/1-952 PSLEGLVAFE APELPEETLM EREHTDTFRH LNAMLLFTEC VLDLTAVRGG 901 950 ENSBTAP00000029699/1-1037 SPELCASAVS VYQIQESAVV DQISQLSKDW GRVEQLVLYM KAAQLLAASL ENSTTRP00000007154/1-1033 DPGLCASAVS LYQIQESAVV DQISQLSKDW GRVEQLVLYM KAAQLLAASL bmy_19852T0/1-1306 DPGLCASAVS LYQIQESAVV DQISQLSKDW GRVEQLVLYM KAAQLLAASL BACU005244/1-952 DPGLCASAVS LYQIQESAVV DQISQLSKDW GRVEQLVLYM KAAQLLAASL 951 1000 ENSBTAP00000029699/1-1037 HLAKEQIKSG KLSPSSGVKQ VVKNLNERYK FCISMCKKLT EKLNRFFSDK ENSTTRP00000007154/1-1033 HLAKEQIKSG KLSPSTGVKQ VVKNLNERYK FCISMCKKLT EKLNRFFSDK bmy_19852T0/1-1306 HLAKEQIKSG KLSPSTGVKQ VVKNLNERYK FCISMCKKLT EKLNRFFSDK BACU005244/1-952 HLAKEQIKSG KLSPSTGVKQ VVKNLNERYK FCISMCKKLT EKLNRFFSDK 1001 1050 ENSBTAP00000029699/1-1037 QRFIDEINSV TAEKLIYNCA VEMVQAAALD EMFQQTEDIV YRYHKAALLL ENSTTRP00000007154/1-1033 QRFIDEINSV TAEKLIYNCA VEMVQAAALD EMFQQTEDIV YRYHKAALLL bmy_19852T0/1-1306 QRFIDEINSV TAEKLIYNCA VEMVQAAALD EMFQQTEDXV YRYHKAALLL BACU005244/1-952 QRFIDEINSV TAEKLIYNCA VEMVQAAALD EMFQQTEDIV YRYHKAALLL 1051 1100 ENSBTAP00000029699/1-1037 EGLTKILQDP ADIENI---- ---------- ---------- ---------- ENSTTRP00000007154/1-1033 EGLTKILQDP ADIENV---- ---------- ---------- ---------- bmy_19852T0/1-1306 EGLTKILQDP ADIENINLVL KGDCRPSATA PRPRELQQAC RQDQWWVPAR BACU005244/1-952 EGLTKILQDP ADIENV---- ---------- ---------- ---------- 1101 1150 ENSBTAP00000029699/1-1037 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007154/1-1033 ---------- ---------- ---------- ---------- ---------- bmy_19852T0/1-1306 RPPKSKQWFQ KGKTTPELPA LSEKSPLPFF FVDAEARVFH LAFSLNLVNK BACU005244/1-952 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSBTAP00000029699/1-1037 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007154/1-1033 ---------- ---------- ---------- ---------- ---------- bmy_19852T0/1-1306 CTLELELSVQ LFLRIIRNET MSGSSRHSPE QSVGFHTFTE AKKSLIQCFY BACU005244/1-952 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSBTAP00000029699/1-1037 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007154/1-1033 ---------- ---------- ---------- ---------- ---------- bmy_19852T0/1-1306 LLFVTACIIH ETRVRLGPCD VACQARSFLS EFGGLVVNTR CPAPGFQMLG BACU005244/1-952 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSBTAP00000029699/1-1037 ---------- ---------- ---------- ---------- HRYK------ ENSTTRP00000007154/1-1033 ---------- ---------- ---------- ---------- HKYK------ bmy_19852T0/1-1306 DCPAGCQEHG LRVTTRVISL ILRGGGYIPA PPPLSRLFFK HRMKQVHSEE BACU005244/1-952 ---------- ---------- ---------- ---------- HKYK------ 1301 1350 ENSBTAP00000029699/1-1037 ----SSIERR LSALCYSTSA L--------- ---------- ---------- ENSTTRP00000007154/1-1033 ----SRIERR LSALCYSTST L--------- ---------- ---------- bmy_19852T0/1-1306 VLGLQSVPRE VAGLCFVTSK CILLLLVRPR SGERNQPTHS RVDSGAQASR BACU005244/1-952 ----SSIERR LSALCYSTST S--------- ---------- ---------- 1351 1400 ENSBTAP00000029699/1-1037 ---------- ---------- -- ENSTTRP00000007154/1-1033 ---------- ---------- -- bmy_19852T0/1-1306 KVAGAQMRAG LIRERAEWPF LL BACU005244/1-952 ---------- ---------- --