KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:39:45 2014 Check: 00 .. Name: ENSBTAP00000029786/1-1226 Len: 1279 Check: 5089 Weight: 1.00 Name: ENSP00000411197/1-1266 Len: 1279 Check: 6527 Weight: 1.00 Name: BACU013536/1-1125 Len: 1279 Check: 4889 Weight: 1.00 Name: ENSTTRP00000010140/1-1168 Len: 1279 Check: 5457 Weight: 1.00 Name: bmy_02689T0/1-626 Len: 1279 Check: 3347 Weight: 1.00 // 1 50 ENSBTAP00000029786/1-1226 ---------- ---------- ---------- ---------- --SGLLVGTL ENSP00000411197/1-1266 MWVNPEEVLL ANALWITERA NPYFILQRRK GHAGDGGGGG GLAGLLVGTL BACU013536/1-1125 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010140/1-1168 VWLHPEEVLL ANALWITERA NPYFILQRRK GHAGDGGGGG GLAGLLVGTL bmy_02689T0/1-626 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000029786/1-1226 DVVLDSSARV APYRILYQTP DSLVYWTIAC VGKQCTDTFH WEVWKLPSFL ENSP00000411197/1-1266 DVVLDSSARV APYRILYQTP DSLVYWTIAC GGSRKEITEH WE-WLEQNLL BACU013536/1-1125 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010140/1-1168 DVVLDSSARV SPYRILYQTP DSLVYWTIAC GGSRKEITEH WE-WLEQNLL bmy_02689T0/1-626 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000029786/1-1226 SLLLLFNVSL DVSRYVRALL QGIIAEYNKI NDVKEDDDTE KFKEAIVKFH ENSP00000411197/1-1266 QTLSIFENEN DITTFVRGKI QGIIAEYNKI NDVKEDDDTE KFKEAIVKFH BACU013536/1-1125 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010140/1-1168 QTLSIFENEN DITTFVRGKI QGIIAEYNKI NDVKEDDDTE KFKEAIVKFH bmy_02689T0/1-626 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000029786/1-1226 RLFGMPEEEK LVNYYSCSYW KGKVPRQGWM YLSINHLCFY SFLMGREAKL ENSP00000411197/1-1266 RLFGMPEEEK LVNYYSCSYW KGKVPRQGWM YLSINHLCFY SFLMGREAKL BACU013536/1-1125 ----MPEEEK LVNYYSCSYW KGKVPRQGWM YLSINHLCFY SFLMGREAKL ENSTTRP00000010140/1-1168 RLFGMPEEEK LVNYYSCSYW KGKVPRQGWM YLSINHLCFY SFLMGREAKL bmy_02689T0/1-626 ----MPEEEK LVNYYSCSYW KGKVPRQGWM YLSINHLCFY SFLMGREAKL 201 250 ENSBTAP00000029786/1-1226 VIRWVDITQL EKNATLLLPD VIKVSTRSSE HFFSVFLNIN ETFKLMEQLA ENSP00000411197/1-1266 VIRWVDITQL EKNATLLLPD VIKVSTRSSE HFFSVFLNIN ETFKLMEQLA BACU013536/1-1125 VIRWADITQL EKNATLLLPD VIKVNTRSSE HFFSVFLNIN ETFKLMEQLA ENSTTRP00000010140/1-1168 VIRWVDITQL EKNATLLLPD VIKVSTRSSE HFFSVFLNIN ETFKLMEQLA bmy_02689T0/1-626 VIRWVDITQL EKNATLLLPD VIKVSTRSSE HFFSVFLNIN ETFKLMEQLA 251 300 ENSBTAP00000029786/1-1226 NIAMRQLLDN EGFEQDRSLP KLKKKSPKKV SALKRDLDAR AKSERYRALF ENSP00000411197/1-1266 NIAMRQLLDN EGFEQDRSLP KLKRKSPKKV SALKRDLDAR AKSERYRALF BACU013536/1-1125 NIAMRQLLDN EGFEQDRSLP KLKKKSPKKV SALKRDLDAR AKSERYRALF ENSTTRP00000010140/1-1168 NIAMRQLLDN EGFEQDRSLP KLKKKSPKKV SALKRDLDAR AKSERYRALF bmy_02689T0/1-626 NIAMRQLLDN EGFEQDRSLP KLKKKSPKKV SALKRDLDAR AKSERYRALF 301 350 ENSBTAP00000029786/1-1226 RLPKDEKLDG HTDCTLWTPF NKMHILGQMF VSTNYICFTS KEENLCSLII ENSP00000411197/1-1266 RLPKDEKLDG HTDCTLWTPF NKMHILGQMF VSTNYICFTS KEENLCSLII BACU013536/1-1125 RLPKDEKLDG HTDCTLWTPF NKMHILGQMF VSTNYICFTS KEENLCSLII ENSTTRP00000010140/1-1168 RLPKDEKLDG HTDCTLWTPF NKMHILGQMF VSTNYICFTS KEENLCSLII bmy_02689T0/1-626 RLPKDEKLDG HTDCTLWTPF NKMHILGQMF VSTNYICFTS KEENLCSLII 351 400 ENSBTAP00000029786/1-1226 PLREVTIVEK ADSSSVLPSP LSISTRNRMT FLFANLKDRD FLVQRISDFL ENSP00000411197/1-1266 PLREVTIVEK ADSSSVLPSP LSISTRNRMT FLFANLKDRD FLVQRISDFL BACU013536/1-1125 PLREVTIVEK ADSSSVLPSP LSISTKNRMT FLFANLRDRD FLVQRISDFL ENSTTRP00000010140/1-1168 PLREVTIVEK ADSSSVLPSP LSISTKNRMT FLFANLRDRD FLVQRISDFL bmy_02689T0/1-626 PLREVTIVEK ADSSSVLPSP LSISTKNRMT FLFANLRDRD FLVQRISDFL 401 450 ENSBTAP00000029786/1-1226 QQTTSKIYSD KEFAGSYNSS DDEVYSRPSS LVSSSPQRST SSDADGERQF ENSP00000411197/1-1266 QQTTSKIYSD KEFAGSYNSS DDEVYSRPSS LVSSSPQRST SSDADGERQF BACU013536/1-1125 QQTTSKIYSD KEFAGSYNSS DDEVYSRPSS LVSSSPQRST SSDADGERQF ENSTTRP00000010140/1-1168 QQTTSKIYSD KEFAGSYNSS DDEVYSRPSS LVSSSPQRST SSDADGERQF bmy_02689T0/1-626 QQTTSKIYSD KEFAGSYNSS DDEVYSRPSS LISSSPQRST SSDADGERQF 451 500 ENSBTAP00000029786/1-1226 NLNGNSVPTA TQTLMTMYRR RSPEEFNPKL AKEFLKEQAW KIHFAEYGQG ENSP00000411197/1-1266 NLNGNSVPTA TQTLMTMYRR RSPEEFNPKL AKEFLKEQAW KIHFAEYGQG BACU013536/1-1125 NLNGNSVPTA TQTLMTMYRR RSPEEFNPKL AKEFLKEQAW KIHFAEYGQG ENSTTRP00000010140/1-1168 NLNGNSVPTA TQTLMTMYRR RSPEEFNPKL AKEFLKEQAW KIHFAEYGQG bmy_02689T0/1-626 NLNGNSVPTA TQTLMTMYRR RSPEEFNPKL AKEFLKEQAW KIHFAEYGQG 501 550 ENSBTAP00000029786/1-1226 VCMYRTEKTR ELVLKGVPES MRGELWLLLS GAINEKATHP GYYEDLVEKS ENSP00000411197/1-1266 ICMYRTEKTR ELVLKGIPES MRGELWLLLS GAINEKATHP GYYEDLVEKS BACU013536/1-1125 ICMYRTEKTR DLVLKGVPES MRGELWLLLS GAINEKATHP GYYEDLVEKS ENSTTRP00000010140/1-1168 ICMYRTEKTR DLVLKGVPES MRGELWLLLS GAINEKATHP GYYEDLVEKS bmy_02689T0/1-626 ICMYRTEKTR DLVLKGIPES MRGELWLLLS GAINEKATHP GYYEDLVEKS 551 600 ENSBTAP00000029786/1-1226 MGKYNLATEE IERDLHRSLP EHPAFQNEMG IAALRRVLTA YAFRNPNIGY ENSP00000411197/1-1266 MGKYNLATEE IERDLHRSLP EHPAFQNEMG IAALRRVLTA YAFRNPNIGY BACU013536/1-1125 MGKYNLATEE IERDLHRSLP EHPAFQNEMG IAALRRVLTA YAFRNPNIGY ENSTTRP00000010140/1-1168 MGKYNLATEE IERDLHRSLP EHPAFQNEMG IAALRRVLTA YAFRNPNIGY bmy_02689T0/1-626 MGKYNLATEE IERDLHRSLP EHPAFQNEMG IAALRRVLTA YAFRNPNIGY 601 650 ENSBTAP00000029786/1-1226 CQAMNIVTSV LLLYAKEEEA FWLLVALCER MLPDYYNTRV VGALVDQGVF ENSP00000411197/1-1266 CQAMNIVTSV LLLYAKEEEA FWLLVALCER MLPDYYNTRV VGALVDQGVF BACU013536/1-1125 CQAMNIVTSV LLLYAKEEEA FWLLVALCER MLPDYYNTRV VGALVDQGVF ENSTTRP00000010140/1-1168 CQAMNIVTSV LLLYAKEEEA FWLLVALCER MLPDYYNTRV VGALVDQGVF bmy_02689T0/1-626 CQAMNIVTSV LLLYAKEEEA FWLLVALCER MLPDYYNTRV VGALVDQGVF 651 700 ENSBTAP00000029786/1-1226 EELARDYVPQ LYDCMQDLGV ISTISLSWFL TLFLSVMPFE SAVVVVDCFF ENSP00000411197/1-1266 EELARDYVPQ LYDCMQDLGV ISTISLSWFL TLFLSVMPFE SAVVVVDCFF BACU013536/1-1125 EELARDYVPQ LYDCMQDLGV ISTISLSWFL TLFLSVMPFE SAVVVVDCFF ENSTTRP00000010140/1-1168 EELARDYVPQ LYDCMQDLGV ISTISLSWFL TLFLSVMPFE SAVVVVDCFF bmy_02689T0/1-626 EELARDYVPQ LYDCMQDLGV ISTISLSWFL TLFLSVMPFE SAVVVVDCFF 701 750 ENSBTAP00000029786/1-1226 YEGIKVIFQL ALAVLDANVD KLLNCKDDGE AMTVLGRYLD SVTNKDSTLP ENSP00000411197/1-1266 YEGIKVIFQL ALAVLDANVD KLLNCKDDGE AMTVLGRYLD SVTNKDSTLP BACU013536/1-1125 YEGIKVIFQL ALAVLDANVD KLLNCKDDGE AMTVLGRYLD SVTNKDSTLP ENSTTRP00000010140/1-1168 YEGIKVIFQL ALAVLDANVD KLLNCKDDGE AMTVLGRYLD SVTNKDSTLP bmy_02689T0/1-626 YEGIKVIFQL ALAVLDANVD KLLNCKDDGE AMTVLGRYLD SVTNKDSTLP 751 800 ENSBTAP00000029786/1-1226 PIPHLHSLLS DDVEPYPEVD IFRLIRTSYE KFGTIRADLI EQMRFKQRLK ENSP00000411197/1-1266 PIPHLHSLLS DDVEPYPEVD IFRLIRTSYE KFGTIRADLI EQMRFKQRLK BACU013536/1-1125 PIPHLHSLLS EDVEPYPEVD IFRLIRTSYE KFGTIRADLI EQMRFKQRLK ENSTTRP00000010140/1-1168 PIPHLHSLLS DDVEPYPEVD IFRLIRTSYE KFGTIRADLI EQMRFKQRLK bmy_02689T0/1-626 PIPHLHSLLS DDVEPYPEVD IFRLIRTSYE ---------- ---------- 801 850 ENSBTAP00000029786/1-1226 VIQTLEDTTK RNVVRTIVTE TSFTTDELEE LYALFKAEHL TSCYWGGNSN ENSP00000411197/1-1266 VIQTLEDTTK RNVVRTIVTE TSFTIDELEE LYALFKAEHL TSCYWGGSSN BACU013536/1-1125 VIQTLEDTTK RNVVRTIVTE TSFTIDELEE LYALFKAEHL TSCYWGGSSN ENSTTRP00000010140/1-1168 VIQTLEDTTK RNVVRTIVTE TSFTIDELEE LYALFKAEHL TSCYWGGSSN bmy_02689T0/1-626 ---------- ---------- ---------- ---------- ---------- 851 900 ENSBTAP00000029786/1-1226 ALDRHDPSLP YLEQYRIDLE QFKGMFALL- ---------- FPWACGTHSD ENSP00000411197/1-1266 ALDRHDPSLP YLEQYRIDFE QFKGMFALL- ---------- FPWACGTHSD BACU013536/1-1125 ALDRHDPSLP YLEQYRIDFE QFKGMFALLX XXXXXXXXXX XPWACGTHSD ENSTTRP00000010140/1-1168 ALDRHDPSLP YLEQYRIDFE LFKGMFALL- ---------- FPWACGTHSD bmy_02689T0/1-626 ---------- ---------- ---------- ---------- ---------- 901 950 ENSBTAP00000029786/1-1226 VLASRLFQLL DENGDSLINF REFVSGLSAA CHGDLTEKLK LLYKMHVLPE ENSP00000411197/1-1266 VLASRLFQLL DENGDSLINF REFVSGLSAA CHGDLTEKLK LLYKMHVLPE BACU013536/1-1125 VLASRLFQLL DENGDSLINF REFVSGLSAA CHGDLTEKLK LLYKMHVLPE ENSTTRP00000010140/1-1168 VLASRLFQLL DENGDSLINF REFVSGLXXX XXXXXXXXXX XXXXXXXXXX bmy_02689T0/1-626 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSBTAP00000029786/1-1226 PSSDQDEPDS AFEATQYFFE DITPECTHVV GLESRNKHSA DDGFVTVSLK ENSP00000411197/1-1266 PSSDQDEPDS AFEATQYFFE DITPECTHVV GLDSRSKQGA DDGFVTVSLK BACU013536/1-1125 PSSDQDEPDS AFEATQYFFE DITPECTHVV GLDSRSKHGA DDGFVTVSLK ENSTTRP00000010140/1-1168 PSSDQDEPDS AFEATQYFFE DITPECTHVV GLDSRSKHSA DDGFVTVSLK bmy_02689T0/1-626 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSBTAP00000029786/1-1226 PDRGKRANSQ ENRSYLRLWT PENKSKAKNA KDLPKLNQGQ FIELCKTMYN ENSP00000411197/1-1266 PDKGKRANSQ ENRNYLRLWT PENKSKSKNA KDLPKLNQGQ FIELCKTMYN BACU013536/1-1125 PNRGKRANSQ ENRNYLRLWT PENKSKSKNA KDLPKLNQGQ FIELCKTMYN ENSTTRP00000010140/1-1168 PDRGKRANSQ ENRNYLRLWT PENKSRSKNA KDLPKLNQGQ FIELCKTMYN bmy_02689T0/1-626 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSBTAP00000029786/1-1226 MFSEDPNEQE LYHATAAVTS LLLEIGEVGK LFAPQPAKEG GGGGSGPAGH ENSP00000411197/1-1266 MFSEDPNEQE LYHATAAVTS LLLEIGEVGK LFVAQPAKEG GSGGSGPSCH BACU013536/1-1125 MFSEDPNEQE LYHATAAVTS LLLEIGEVGK LFTPQPAREG GSGGGGPSGH ENSTTRP00000010140/1-1168 MFSEDPNEQE LYHATAAVTS LLLEIGEVGK LFTTQPTK-- ---------- bmy_02689T0/1-626 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSBTAP00000029786/1-1226 QGLPGSVLFP KKGPSQPYVP EAAEPLPASL AGASEEHSLG GQMEDIKLED ENSP00000411197/1-1266 QGIPG-VLFP KKGPGQPYVV ESVEPLPASL APDSEEHSLG GQMEDIKLED BACU013536/1-1125 QGVPGGLLFP TKGPGQPYAP EAAAPLPASL AGDGEERSLG GQMEDIKLED ENSTTRP00000010140/1-1168 ---------- ---------- ---------- ---------- ---------- bmy_02689T0/1-626 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSBTAP00000029786/1-1226 SSPRDHGACS SMLISDDDTK DDSSMSSYSV LSAGSHEEDK LHCEDIGEDT ENSP00000411197/1-1266 SSPRDNGACS SMLISDDDTK DDSSMSSYSV LSAGSHEEDK LHCEDIGEDT BACU013536/1-1125 SSPRDHGACS SMLISDDDTK DDSSMSSYSV LSAGSHEEDK LHCEDIGEDT ENSTTRP00000010140/1-1168 ---------- ---------- ---------- -------EDK LHCEDIGEDT bmy_02689T0/1-626 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSBTAP00000029786/1-1226 VLVRSGQGTA ALPRSTSLDR DWAITFEQFL ASLLTEPALV KYFDKPVCMM ENSP00000411197/1-1266 VLVRSGQGTA ALPRSTSLDR DWAITFEQFL ASLLTEPALV KYFDKPVCMM BACU013536/1-1125 VLVRSGQGPA ALPRSSSLDR DWAITFEQFL ASLLTEPALV KYFDKPVCMK ENSTTRP00000010140/1-1168 VLVRSGQGTA ALPRSTSLDR DWAITFEQFL ASLLTEPALV KYFDKPVCMM bmy_02689T0/1-626 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSBTAP00000029786/1-1226 ARITSAKNIR MMGKPLTSIS DYEISALSG ENSP00000411197/1-1266 ARITSAKNIR MMGKPLTSAS DYEISAMSG BACU013536/1-1125 ARITSAKNIR MMGKPLTSAS DYEISAMSG ENSTTRP00000010140/1-1168 ARITSAKNIR MMGKPLTSAS DYEISAMSG bmy_02689T0/1-626 ---------- ---------- ---------